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Aliases for TSPAN15 Gene

Aliases for TSPAN15 Gene

  • Tetraspanin 15 2 3 5
  • Transmembrane 4 Superfamily Member 15 2 3 4
  • Tetraspan NET-7 3 4
  • Tspan-15 3 4
  • TM4SF15 3 4
  • NET7 3 4
  • Transmembrane 4 Superfamily Member Tetraspan NET-7 3
  • Tetraspanin-15 3
  • 2700063A19Rik 3
  • NET-7 3

External Ids for TSPAN15 Gene

Previous HGNC Symbols for TSPAN15 Gene

  • TM4SF15

Previous GeneCards Identifiers for TSPAN15 Gene

  • GC10P070882
  • GC10P071211
  • GC10P065211

Summaries for TSPAN15 Gene

Entrez Gene Summary for TSPAN15 Gene

  • The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family. Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains. The proteins mediate signal transduction events that play a role in the regulation of cell development, activation, growth and motility. The use of alternate polyadenylation sites has been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for TSPAN15 Gene

TSPAN15 (Tetraspanin 15) is a Protein Coding gene. GO annotations related to this gene include enzyme binding. An important paralog of this gene is TSPAN33.

UniProtKB/Swiss-Prot for TSPAN15 Gene

  • Regulates maturation and trafficking of the transmembrane metalloprotease ADAM10. Promotes ADAM10-mediated cleavage of CDH2. Negatively regulates ligand-induced Notch activity probably by regulating ADAM10 activity.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPAN15 Gene

Genomics for TSPAN15 Gene

Regulatory Elements for TSPAN15 Gene

Enhancers for TSPAN15 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F069445 0.6 Ensembl ENCODE 43.7 +24.4 24375 9.0 PKNOX1 CREB3L1 SIN3A FEZF1 ZNF2 ZNF766 CBX5 ZNF143 FOS KLF13 TSPAN15 CCAR1 DDX50 DDX21 C10orf35 TYSND1 TACR2 AIFM2 ATP5G1P7 GC10M069447
GH10F069490 0.6 ENCODE 40.2 +70.3 70280 9.1 PKNOX1 RAD21 ZNF23 SCRT2 ZMIZ1 FOS EGR2 SMARCA5 SMAD5 REST TSPAN15 LOC101929021 NEUROG3 C10orf35 GC10M069447 TMEM256P1
GH10F069436 1 Ensembl ENCODE 38.9 +13.6 13628 4.4 ELF3 MXI1 ESRRA PKNOX1 ZNF133 JUN MAX ZNF384 GATA3 CTBP1 TSPAN15 C10orf35 HK1 ENSG00000231748 ATP5G1P7 GC10M069447
GH10F069456 1.2 Ensembl ENCODE 35.8 +34.2 34167 5.6 PKNOX1 GLI4 FEZF1 ZNF2 GLIS2 KLF7 FOS ZNF263 SP3 YY2 TSPAN15 CCAR1 DDX50 GC10M069447 ATP5G1P7
GH10F069477 1.2 Ensembl ENCODE 33.4 +54.9 54910 5.1 HDAC1 PKNOX1 FEZF1 RAD21 ZNF766 GATA2 SCRT2 EGR2 SMAD5 CEBPB TSPAN15 C10orf35 ENSG00000231748 HK1 GC10M069447 TMEM256P1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TSPAN15 on UCSC Golden Path with GeneCards custom track

Genomic Location for TSPAN15 Gene

Chromosome:
10
Start:
69,425,218 bp from pter
End:
69,507,669 bp from pter
Size:
82,452 bases
Orientation:
Plus strand

Genomic View for TSPAN15 Gene

Genes around TSPAN15 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSPAN15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSPAN15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPAN15 Gene

Proteins for TSPAN15 Gene

  • Protein details for TSPAN15 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O95858-TSN15_HUMAN
    Recommended name:
    Tetraspanin-15
    Protein Accession:
    O95858
    Secondary Accessions:
    • Q6UW79

    Protein attributes for TSPAN15 Gene

    Size:
    294 amino acids
    Molecular mass:
    33165 Da
    Quaternary structure:
    • Interacts with ADAM10; the interacation influences ADAM10 substrate specificity.

neXtProt entry for TSPAN15 Gene

Post-translational modifications for TSPAN15 Gene

  • Glycosylation at Asn 118, Asn 189, and Asn 230
  • Modification sites at PhosphoSitePlus

Other Protein References for TSPAN15 Gene

No data available for DME Specific Peptides for TSPAN15 Gene

Domains & Families for TSPAN15 Gene

Gene Families for TSPAN15 Gene

Protein Domains for TSPAN15 Gene

Suggested Antigen Peptide Sequences for TSPAN15 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O95858

UniProtKB/Swiss-Prot:

TSN15_HUMAN :
  • Belongs to the tetraspanin (TM4SF) family.
Family:
  • Belongs to the tetraspanin (TM4SF) family.
genes like me logo Genes that share domains with TSPAN15: view

Function for TSPAN15 Gene

Molecular function for TSPAN15 Gene

UniProtKB/Swiss-Prot Function:
Regulates maturation and trafficking of the transmembrane metalloprotease ADAM10. Promotes ADAM10-mediated cleavage of CDH2. Negatively regulates ligand-induced Notch activity probably by regulating ADAM10 activity.

Gene Ontology (GO) - Molecular Function for TSPAN15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0019899 enzyme binding IEA,IPI 23091066
genes like me logo Genes that share ontologies with TSPAN15: view
genes like me logo Genes that share phenotypes with TSPAN15: view

Animal Model Products

  • Taconic Biosciences Mouse Models for TSPAN15

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TSPAN15 Gene

Localization for TSPAN15 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TSPAN15 Gene

Cell membrane; Multi-pass membrane protein. Late endosome membrane.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TSPAN15 Gene COMPARTMENTS Subcellular localization image for TSPAN15 gene
Compartment Confidence
extracellular 5
plasma membrane 5
cytosol 2
nucleus 2
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for TSPAN15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IDA 23091066
GO:0005887 integral component of plasma membrane IBA --
GO:0009986 cell surface IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TSPAN15: view

Pathways & Interactions for TSPAN15 Gene

SuperPathways for TSPAN15 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TSPAN15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007166 cell surface receptor signaling pathway IBA --
GO:0008593 NOT regulation of Notch signaling pathway IMP 23091066
GO:0051604 protein maturation IEA,IMP 23091066
GO:0090002 establishment of protein localization to plasma membrane IMP 23091066
genes like me logo Genes that share ontologies with TSPAN15: view

No data available for Pathways by source and SIGNOR curated interactions for TSPAN15 Gene

Transcripts for TSPAN15 Gene

Unigene Clusters for TSPAN15 Gene

Tetraspanin 15:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSPAN15 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b · 9c · 9d
SP1: - - - - -
SP2: - - - - - -
SP3: - - - - - - -
SP4: - -
SP5: -
SP6:
SP7:

Relevant External Links for TSPAN15 Gene

GeneLoc Exon Structure for
TSPAN15
ECgene alternative splicing isoforms for
TSPAN15

Expression for TSPAN15 Gene

mRNA expression in normal human tissues for TSPAN15 Gene

Protein differential expression in normal tissues from HIPED for TSPAN15 Gene

This gene is overexpressed in Frontal cortex (12.6), Pancreas (8.2), and Spinal cord (6.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TSPAN15 Gene



Protein tissue co-expression partners for TSPAN15 Gene

NURSA nuclear receptor signaling pathways regulating expression of TSPAN15 Gene:

TSPAN15

SOURCE GeneReport for Unigene cluster for TSPAN15 Gene:

Hs.499941
genes like me logo Genes that share expression patterns with TSPAN15: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TSPAN15 Gene

Orthologs for TSPAN15 Gene

This gene was present in the common ancestor of animals.

Orthologs for TSPAN15 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TSPAN15 34 35
  • 99.66 (n)
dog
(Canis familiaris)
Mammalia TSPAN15 34 35
  • 91.38 (n)
cow
(Bos Taurus)
Mammalia TSPAN15 34 35
  • 91.24 (n)
mouse
(Mus musculus)
Mammalia Tspan15 34 16 35
  • 88.1 (n)
rat
(Rattus norvegicus)
Mammalia Tspan15 34
  • 86.28 (n)
oppossum
(Monodelphis domestica)
Mammalia TSPAN15 35
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TSPAN15 35
  • 72 (a)
OneToOne
chicken
(Gallus gallus)
Aves TSPAN15 34 35
  • 75.77 (n)
lizard
(Anolis carolinensis)
Reptilia TSPAN15 35
  • 79 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tspan15 34
  • 68.05 (n)
Str.1562 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.6438 34
zebrafish
(Danio rerio)
Actinopterygii tspan15 34 35
  • 66.55 (n)
fruit fly
(Drosophila melanogaster)
Insecta Tsp3A 35
  • 30 (a)
ManyToMany
Tsp86D 35
  • 30 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 30 (a)
OneToOne
Species where no ortholog for TSPAN15 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TSPAN15 Gene

ENSEMBL:
Gene Tree for TSPAN15 (if available)
TreeFam:
Gene Tree for TSPAN15 (if available)

Paralogs for TSPAN15 Gene

Paralogs for TSPAN15 Gene

(6) SIMAP similar genes for TSPAN15 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with TSPAN15: view

Variants for TSPAN15 Gene

Sequence variations from dbSNP and Humsavar for TSPAN15 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10509313 -- 69,512,378(+) TAAGG(A/G)AGACT intron-variant
rs1052179 -- 69,507,254(-) TCCCC(C/T)GTAGC intron-variant, nc-transcript-variant, utr-variant-3-prime
rs1063680 -- 69,507,027(+) AGCAC(C/T)TCTCA intron-variant, nc-transcript-variant, utr-variant-3-prime
rs1063681 -- 69,507,058(+) CAGGG(C/T)TGCGG intron-variant, nc-transcript-variant, utr-variant-3-prime
rs10762296 -- 69,458,963(+) TCACA(A/G)TGCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TSPAN15 Gene

Variant ID Type Subtype PubMed ID
esv2678828 CNV deletion 23128226
esv32737 CNV gain+loss 17666407
esv3623745 CNV gain 21293372
esv3623746 CNV loss 21293372
nsv467356 CNV loss 19166990
nsv508590 CNV deletion 20534489
nsv523004 CNV loss 19592680
nsv524063 CNV loss 19592680
nsv524514 CNV loss 19592680
nsv551454 CNV loss 21841781
nsv7021 CNV deletion 18451855

Variation tolerance for TSPAN15 Gene

Residual Variation Intolerance Score: 85.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.12; 51.26% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TSPAN15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSPAN15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TSPAN15 Gene

Disorders for TSPAN15 Gene

Relevant External Links for TSPAN15

Genetic Association Database (GAD)
TSPAN15
Human Genome Epidemiology (HuGE) Navigator
TSPAN15
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TSPAN15

No disorders were found for TSPAN15 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSPAN15 Gene

Publications for TSPAN15 Gene

  1. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A. … Goate A. (Am. J. Hum. Genet. 2006) 3 46 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4 64
  4. Complexes of tetraspanins with integrins: more than meets the eye. (PMID: 11739647) Berditchevski F. (J. Cell. Sci. 2001) 2 3 64
  5. Sequence and expression of seven new tetraspans. (PMID: 10719184) Serru V. … Rubinstein E. (Biochim. Biophys. Acta 2000) 2 3 64

Products for TSPAN15 Gene

Sources for TSPAN15 Gene

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