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Aliases for TSPAN15 Gene

Aliases for TSPAN15 Gene

  • Tetraspanin 15 2 3
  • Transmembrane 4 Superfamily Member 15 2 3 4
  • NET7 3 4 6
  • Tetraspan NET-7 3 4
  • Tspan-15 3 4
  • TM4SF15 3 4
  • Transmembrane 4 Superfamily Member Tetraspan NET-7 3
  • Tetraspanin-15 3
  • 2700063A19Rik 3
  • NET-7 3

External Ids for TSPAN15 Gene

Previous Symbols for TSPAN15 Gene

  • TM4SF15

Summaries for TSPAN15 Gene

Entrez Gene Summary for TSPAN15 Gene

  • The protein encoded by this gene is a member of the transmembrane 4 superfamily, also known as the tetraspanin family. Most of these members are cell-surface proteins that are characterized by the presence of four hydrophobic domains. The proteins mediate signal transduction events that play a role in the regulation of cell development, activation, growth and motility. The use of alternate polyadenylation sites has been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for TSPAN15 Gene

TSPAN15 (Tetraspanin 15) is a Protein Coding gene. An important paralog of this gene is TSPAN7.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSPAN15 Gene

Genomics for TSPAN15 Gene

Genomic Location for TSPAN15 Gene

Start:
69,425,182 bp from pter
End:
69,507,669 bp from pter
Size:
82,488 bases
Orientation:
Plus strand

Genomic View for TSPAN15 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TSPAN15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSPAN15 Gene

Regulatory Elements for TSPAN15 Gene

Proteins for TSPAN15 Gene

  • Protein details for TSPAN15 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O95858-TSN15_HUMAN
    Recommended name:
    Tetraspanin-15
    Protein Accession:
    O95858
    Secondary Accessions:
    • Q6UW79

    Protein attributes for TSPAN15 Gene

    Size:
    294 amino acids
    Molecular mass:
    33165 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TSPAN15 Gene

Proteomics data for TSPAN15 Gene at MOPED

Post-translational modifications for TSPAN15 Gene

  • Glycosylation at Asn118, Asn189, and Asn230

Other Protein References for TSPAN15 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TSPAN15 Gene

Domains for TSPAN15 Gene

Gene Families for TSPAN15 Gene

HGNC:

Protein Domains for TSPAN15 Gene

Suggested Antigen Peptide Sequences for TSPAN15 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O95858

UniProtKB/Swiss-Prot:

TSN15_HUMAN
Family:
  • Belongs to the tetraspanin (TM4SF) family.:
    • O95858
genes like me logo Genes that share domains with TSPAN15: view

Function for TSPAN15 Gene

Gene Ontology (GO) - Molecular Function for TSPAN15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0019899 enzyme binding IPI 23091066
genes like me logo Genes that share ontologies with TSPAN15: view

Phenotypes for TSPAN15 Gene

GenomeRNAi human phenotypes for TSPAN15:
genes like me logo Genes that share phenotypes with TSPAN15: view

miRNA for TSPAN15 Gene

miRTarBase miRNAs that target TSPAN15

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for TSPAN15 Gene

Localization for TSPAN15 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TSPAN15 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TSPAN15 Gene COMPARTMENTS Subcellular localization image for TSPAN15 gene
Compartment Confidence
plasma membrane 4
cytosol 1
endoplasmic reticulum 1
nucleus 1

Gene Ontology (GO) - Cellular Components for TSPAN15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IDA 23091066
GO:0009986 cell surface IEA --
GO:0016021 integral component of membrane IEA --
GO:0070062 extracellular exosome IDA 23376485
GO:0097197 tetraspanin-enriched microdomain IEA --
genes like me logo Genes that share ontologies with TSPAN15: view

Pathways for TSPAN15 Gene

SuperPathways for TSPAN15 Gene

No Data Available

Interacting Proteins for TSPAN15 Gene

Gene Ontology (GO) - Biological Process for TSPAN15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008593 NOT regulation of Notch signaling pathway IMP 23091066
GO:0051604 protein maturation IMP 23091066
GO:0090002 establishment of protein localization to plasma membrane IMP 23091066
genes like me logo Genes that share ontologies with TSPAN15: view

No data available for Pathways by source for TSPAN15 Gene

Transcripts for TSPAN15 Gene

Unigene Clusters for TSPAN15 Gene

Tetraspanin 15:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TSPAN15 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b · 9c · 9d
SP1: - - - - -
SP2: - - - - - -
SP3: - - - - - - -
SP4: - -
SP5: -
SP6:
SP7:

Relevant External Links for TSPAN15 Gene

GeneLoc Exon Structure for
TSPAN15
ECgene alternative splicing isoforms for
TSPAN15

Expression for TSPAN15 Gene

mRNA expression in normal human tissues for TSPAN15 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TSPAN15 Gene

SOURCE GeneReport for Unigene cluster for TSPAN15 Gene Hs.499941

genes like me logo Genes that share expressions with TSPAN15: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TSPAN15 Gene

Orthologs for TSPAN15 Gene

This gene was present in the common ancestor of animals.

Orthologs for TSPAN15 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TSPAN15 35
  • 99.66 (n)
  • 100 (a)
TSPAN15 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TSPAN15 35
  • 91.24 (n)
  • 92.83 (a)
TSPAN15 36
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TSPAN15 35
  • 91.38 (n)
  • 93.54 (a)
TSPAN15 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tspan15 35
  • 88.1 (n)
  • 91.84 (a)
Tspan15 16
Tspan15 36
  • 92 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TSPAN15 36
  • 75 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TSPAN15 36
  • 72 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tspan15 35
  • 86.28 (n)
  • 90.82 (a)
chicken
(Gallus gallus)
Aves TSPAN15 35
  • 75.77 (n)
  • 79.18 (a)
TSPAN15 36
  • 79 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TSPAN15 36
  • 79 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.6438 35
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.1562 35
tspan15 35
  • 68.05 (n)
  • 71.97 (a)
zebrafish
(Danio rerio)
Actinopterygii tspan15 35
  • 66.55 (n)
  • 66.78 (a)
tspan15 36
  • 64 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Tsp3A 36
  • 30 (a)
ManyToMany
Tsp86D 36
  • 30 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 30 (a)
OneToOne
Species with no ortholog for TSPAN15:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TSPAN15 Gene

ENSEMBL:
Gene Tree for TSPAN15 (if available)
TreeFam:
Gene Tree for TSPAN15 (if available)

Paralogs for TSPAN15 Gene

Selected SIMAP similar genes for TSPAN15 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with TSPAN15: view

Variants for TSPAN15 Gene

Sequence variations from dbSNP and Humsavar for TSPAN15 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs11068 -- 69,507,167(+) TCCCC(A/G/T)AAGAG utr-variant-3-prime
rs716786 -- 69,487,089(-) AACCC(A/G)TAGCC intron-variant
rs716787 -- 69,487,185(-) TGCCC(A/G)GGGTC intron-variant
rs716788 -- 69,487,307(-) CGGGG(A/G)AATTC intron-variant
rs736594 -- 69,467,034(+) TTTCC(C/T)GGCTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TSPAN15 Gene

Variant ID Type Subtype PubMed ID
nsv895696 CNV Gain 21882294
nsv523004 CNV Loss 19592680
esv2678828 CNV Deletion 23128226
nsv524063 CNV Loss 19592680
nsv7021 CNV Loss 18451855
nsv524514 CNV Loss 19592680
nsv508590 CNV Loss 20534489
nsv467356 CNV Loss 19166990
esv32737 CNV Gain+Loss 17666407

Relevant External Links for TSPAN15 Gene

HapMap Linkage Disequilibrium report
TSPAN15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TSPAN15 Gene

Disorders for TSPAN15 Gene

Relevant External Links for TSPAN15

Genetic Association Database (GAD)
TSPAN15
Human Genome Epidemiology (HuGE) Navigator
TSPAN15
genes like me logo Genes that share disorders with TSPAN15: view

No data available for UniProtKB/Swiss-Prot for TSPAN15 Gene

Publications for TSPAN15 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A. … Goate A. (Am. J. Hum. Genet. 2006) 3 48
  4. Sequence and expression of seven new tetraspans. (PMID: 10719184) Serru V. … Rubinstein E. (Biochim. Biophys. Acta 2000) 2 3
  5. Complexes of tetraspanins with integrins: more than meets the eye. (PMID: 11739647) Berditchevski F. (J. Cell. Sci. 2001) 2 3

Products for TSPAN15 Gene

  • antibodies-online peptides for TSPAN15
  • antibodies-online antibodies for TSPAN15
  • antibodies-online kits for TSPAN15

Sources for TSPAN15 Gene

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