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Aliases for TSN Gene

Aliases for TSN Gene

  • Translin 2 3 3 5
  • Recombination Hotspot Associated Factor 2 3
  • Component 3 Of Promoter Of RISC 3 4
  • C3PO 3 4
  • Recombination Hotspot-Binding Protein 3
  • Testis Brain-RNA Binding Protein 3
  • EC 3.1.-.- 4
  • BCLF-1 3
  • REHF-1 3
  • RCHF1 3
  • TBRBP 3
  • TRSLN 3

External Ids for TSN Gene

Previous GeneCards Identifiers for TSN Gene

  • GC02P119718
  • GC02P120433
  • GC02P122419
  • GC02P122608
  • GC02P122229
  • GC02P114835

Summaries for TSN Gene

Entrez Gene Summary for TSN Gene

  • This gene encodes a DNA-binding protein which specifically recognizes conserved target sequences at the breakpoint junction of chromosomal translocations. Translin polypeptides form a multimeric structure that is responsible for its DNA-binding activity. Recombination-associated motifs and translin-binding sites are present at recombination hotspots and may serve as indicators of breakpoints in genes which are fused by translocations. These binding activities may play a crucial role in chromosomal translocation in lymphoid neoplasms. This protein encoded by this gene, when complexed with translin-associated protein X, also forms a Mg ion-dependent endoribonuclease that promotes RNA-induced silencing complex (RISC) activation. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2012]

GeneCards Summary for TSN Gene

TSN (Translin) is a Protein Coding gene. Diseases associated with TSN include Liposarcoma. Among its related pathways are Gene Expression and Mitotic Prophase. GO annotations related to this gene include sequence-specific DNA binding and protein complex binding.

UniProtKB/Swiss-Prot for TSN Gene

  • DNA-binding protein that specifically recognizes consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. Seems to recognize single-stranded DNA ends generated by staggered breaks occurring at recombination hot spots.

  • Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand.

Gene Wiki entry for TSN Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSN Gene

Genomics for TSN Gene

Regulatory Elements for TSN Gene

Enhancers for TSN Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G121524 1.7 Ensembl ENCODE dbSUPER 10.6 -208.1 -208064 9.2 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 NIFK TSN LINC01823 CLASP1 ENSG00000265451 GC02M121346
GH02G121706 1.1 Ensembl ENCODE 11.8 -29.1 -29119 2.5 ELF3 INSM2 ARID4B FEZF1 RARA SLC30A9 ZNF366 ZSCAN5C THAP11 HMG20B TSN NIFK NPM1P32 ENSG00000279721
GH02G121476 1 Ensembl ENCODE dbSUPER 10.5 -260.5 -260450 1.1 GATA3 ZMYM3 PRDM10 NIFK TSN ENSG00000265451 GC02M121346
GH02G121399 0.4 ENCODE 10.8 -336.8 -336824 0.9 BHLHE40 FOS NIFK TSN LINC01823 GC02M121346 GC02M121365
GH02G121710 0.3 FANTOM5 11.8 -26.8 -26845 0.1 TSN NIFK NPM1P32
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TSN on UCSC Golden Path with GeneCards custom track

Promoters for TSN Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000122679 -403 2201 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 ZNF207

Genomic Location for TSN Gene

Chromosome:
2
Start:
121,737,103 bp from pter
End:
121,767,853 bp from pter
Size:
30,751 bases
Orientation:
Plus strand

Genomic View for TSN Gene

Genes around TSN on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSN Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSN Gene

Proteins for TSN Gene

  • Protein details for TSN Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q15631-TSN_HUMAN
    Recommended name:
    Translin
    Protein Accession:
    Q15631
    Secondary Accessions:
    • B7Z3X8
    • Q5U0K7

    Protein attributes for TSN Gene

    Size:
    228 amino acids
    Molecular mass:
    26183 Da
    Quaternary structure:
    • Ring-shaped heterooctamer of six TSN and two TSNAX subunits, DNA/RNA binding occurs inside the ring.

    Three dimensional structures from OCA and Proteopedia for TSN Gene

    Alternative splice isoforms for TSN Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TSN Gene

Post-translational modifications for TSN Gene

  • Ubiquitination at posLast=5656, isoforms=187, and posLast=219219
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for TSN Gene

Domains & Families for TSN Gene

Protein Domains for TSN Gene

Graphical View of Domain Structure for InterPro Entry

Q15631

UniProtKB/Swiss-Prot:

TSN_HUMAN :
  • Belongs to the translin family.
Family:
  • Belongs to the translin family.
genes like me logo Genes that share domains with TSN: view

No data available for Gene Families for TSN Gene

Function for TSN Gene

Molecular function for TSN Gene

GENATLAS Biochemistry:
translin,recombinational hot spot protein,expressed in brain and testis,dimerizing DNA binding protein at the breakpoint junctions in chromosomal translocations,involved in DNA damage repair and in mRNA transport
UniProtKB/Swiss-Prot Function:
DNA-binding protein that specifically recognizes consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. Seems to recognize single-stranded DNA ends generated by staggered breaks occurring at recombination hot spots.
UniProtKB/Swiss-Prot Function:
Exhibits both single-stranded and double-stranded endoribonuclease activity. May act as an activator of RNA-induced silencing complex (RISC) by facilitating endonucleolytic cleavage of the siRNA passenger strand.

Enzyme Numbers (IUBMB) for TSN Gene

Gene Ontology (GO) - Molecular Function for TSN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding TAS 7663511
GO:0003697 single-stranded DNA binding IEA --
GO:0003723 RNA binding IEA --
GO:0003729 mRNA binding IEA --
GO:0004518 nuclease activity IEA --
genes like me logo Genes that share ontologies with TSN: view
genes like me logo Genes that share phenotypes with TSN: view

Animal Models for TSN Gene

MGI Knock Outs for TSN:

Animal Model Products

  • Taconic Biosciences Mouse Models for TSN

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for TSN

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for TSN Gene

Localization for TSN Gene

Subcellular locations from UniProtKB/Swiss-Prot for TSN Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TSN gene
Compartment Confidence
cytosol 5
nucleus 4
plasma membrane 1
extracellular 1
cytoskeleton 1
peroxisome 1
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for TSN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus TAS,IBA --
GO:0005737 cytoplasm IEA --
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with TSN: view

Pathways & Interactions for TSN Gene

genes like me logo Genes that share pathways with TSN: view

Pathways by source for TSN Gene

Gene Ontology (GO) - Biological Process for TSN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006310 DNA recombination TAS 7663511
GO:0016070 RNA metabolic process IEA --
GO:0030422 production of siRNA involved in RNA interference TAS --
GO:0031047 gene silencing by RNA TAS --
GO:0090305 nucleic acid phosphodiester bond hydrolysis IEA --
genes like me logo Genes that share ontologies with TSN: view

No data available for SIGNOR curated interactions for TSN Gene

Drugs & Compounds for TSN Gene

(1) Drugs for TSN Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(1) Additional Compounds for TSN Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with TSN: view

Transcripts for TSN Gene

Unigene Clusters for TSN Gene

Translin:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for TSN

Alternative Splicing Database (ASD) splice patterns (SP) for TSN Gene

No ASD Table

Relevant External Links for TSN Gene

GeneLoc Exon Structure for
TSN
ECgene alternative splicing isoforms for
TSN

Expression for TSN Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TSN Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TSN Gene



Protein tissue co-expression partners for TSN Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TSN Gene:

TSN

SOURCE GeneReport for Unigene cluster for TSN Gene:

Hs.75066

Evidence on tissue expression from TISSUES for TSN Gene

  • Nervous system(4.9)
  • Lung(4.4)
  • Kidney(2.3)
  • Liver(2)
genes like me logo Genes that share expression patterns with TSN: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSN Gene

Orthologs for TSN Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TSN Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TSN 34 35
  • 99.85 (n)
dog
(Canis familiaris)
Mammalia TSN 34 35
  • 94.88 (n)
oppossum
(Monodelphis domestica)
Mammalia TSN 35
  • 93 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TSN 35
  • 93 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TSN 34 35
  • 91.67 (n)
rat
(Rattus norvegicus)
Mammalia Tsn 34
  • 90.64 (n)
mouse
(Mus musculus)
Mammalia Tsn 34 16 35
  • 90.2 (n)
chicken
(Gallus gallus)
Aves TSN 34 35
  • 77.78 (n)
lizard
(Anolis carolinensis)
Reptilia TSN 35
  • 84 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia mllt4 34
  • 71.85 (n)
African clawed frog
(Xenopus laevis)
Amphibia tsn-prov 34
zebrafish
(Danio rerio)
Actinopterygii tsn 34 35
  • 71.28 (n)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10580 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005538 34
  • 54.41 (n)
fruit fly
(Drosophila melanogaster)
Insecta trsn 34 35
  • 53.27 (n)
CG11761 36
  • 52 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G37020 34
  • 52.18 (n)
rice
(Oryza sativa)
Liliopsida Os10g0443200 34
  • 47.08 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes tsn1 34
  • 49.83 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU06664 34
  • 46.7 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 43 (a)
OneToOne
Species where no ortholog for TSN was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TSN Gene

ENSEMBL:
Gene Tree for TSN (if available)
TreeFam:
Gene Tree for TSN (if available)

Paralogs for TSN Gene

Pseudogenes.org Pseudogenes for TSN Gene

genes like me logo Genes that share paralogs with TSN: view

No data available for Paralogs for TSN Gene

Variants for TSN Gene

Sequence variations from dbSNP and Humsavar for TSN Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000298419 -- 121,756,016(+) TGCTG(C/T)TCTGT intron-variant
rs1000351325 -- 121,762,709(+) AATAT(C/T)GTAAC intron-variant
rs1000777299 -- 121,767,366(+) AAGAC(C/T)GGGGT nc-transcript-variant, utr-variant-3-prime
rs1001243966 -- 121,761,828(+) AATAT(A/T)TTTTT intron-variant
rs1001248236 -- 121,760,826(+) AAGGC(A/G)CAATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TSN Gene

Variant ID Type Subtype PubMed ID
esv3592209 CNV gain 21293372
esv3592217 CNV gain 21293372
nsv1011665 CNV gain 25217958
nsv459163 CNV gain 19166990
nsv582808 CNV gain 21841781
nsv834351 CNV loss 17160897

Variation tolerance for TSN Gene

Residual Variation Intolerance Score: 30.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.24; 5.34% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TSN Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSN

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TSN Gene

Disorders for TSN Gene

MalaCards: The human disease database

(1) MalaCards diseases for TSN Gene - From: Novoseek and GeneCards

Disorder Aliases PubMed IDs
liposarcoma
- elite association - COSMIC cancer census association via MalaCards
Search TSN in MalaCards View complete list of genes associated with diseases

Relevant External Links for TSN

Genetic Association Database (GAD)
TSN
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TSN
genes like me logo Genes that share disorders with TSN: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TSN Gene

Publications for TSN Gene

  1. Genomic structure and chromosomal localization of the gene encoding translin, a recombination hotspot binding protein. (PMID: 9244443) Aoki K. … Kasai M. (Genomics 1997) 2 3 4 22 64
  2. The translin ring specifically recognizes DNA ends at recombination hot spots in the human genome. (PMID: 9111049) Kasai M. … Suzuki K. (J. Biol. Chem. 1997) 3 4 22 64
  3. A novel gene, Translin, encodes a recombination hotspot binding protein associated with chromosomal translocations. (PMID: 7663511) Aoki K. … Kasai M. (Nat. Genet. 1995) 3 4 22 64
  4. Recombination hotspot associated factors specifically recognize novel target sequences at the site of interchromosomal rearrangements in T-ALL patients with t(8;14)(q24;q11) and t(1;14)(p32;q11). (PMID: 7947454) Kasai M. … Strominger J.L. (Int. Immunol. 1994) 2 3 22 64
  5. Structure of C3PO and mechanism of human RISC activation. (PMID: 21552258) Ye X. … Zhang H. (Nat. Struct. Mol. Biol. 2011) 3 4 64

Products for TSN Gene

Sources for TSN Gene

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