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Aliases for TSL Gene

Subcategory (RNA class) for TSL Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for TSL Gene

  • Testis-Expressed, Seven-Twelve, Leukemia 3

External Ids for TSL Gene

Previous GeneCards Identifiers for TSL Gene

  • GC00U922257
  • GC07U902971

Summaries for TSL Gene

GeneCards Summary for TSL Gene

TSL (Testis-Expressed, Seven-Twelve, Leukemia) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for TSL Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSL Gene

Genomics for TSL Gene

Regulatory Elements for TSL Gene

Enhancers for TSL Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H027606 2.2 Ensembl ENCODE 0.4 -9.0 -9000 2 PKNOX1 FOXA2 FEZF1 BRCA1 YY1 TSHZ1 ZNF488 REST SMARCB1 NFIL3 HIBADH TAX1BP1 TSL PIR36003
GH07H027602 1 FANTOM5 ENCODE dbSUPER 0.4 -13.1 -13127 1 PRDM6 POU5F1 HIBADH HOTTIP HOXA13 ENSG00000253508 TSL PIR36003
GH07H027639 1 Ensembl ENCODE 0.3 +25.2 25153 3 JUN MAX RAD21 YY1 SMC3 FOS CHD2 SMARCC1 CEBPB REST HIBADH LOC105375211 TSL
GH07H027603 0.7 ENCODE dbSUPER 0.4 -11.9 -11938 0 RFX1 RFX3 PRDM1 HIBADH HOXA13 HOTTIP ENSG00000253508 TSL PIR36003
GH07H027608 0.7 ENCODE 0.4 -6.9 -6919 0 SMARCE1 RFX1 MAFG CEBPB DPF2 EP300 PRDM6 ZNF316 SMARCA4 SCRT2 HIBADH TSL PIR36003
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TSL on UCSC Golden Path with GeneCards custom track

Genomic Location for TSL Gene

Chromosome:
7
Start:
27,615,974 bp from pter
End:
27,627,492 bp from pter
Size:
11,519 bases
Orientation:
Plus strand

Genomic View for TSL Gene

Genes around TSL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSL Gene

Proteins for TSL Gene

Post-translational modifications for TSL Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSL Gene

Domains & Families for TSL Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TSL Gene

Function for TSL Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSL Gene

Localization for TSL Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSL Gene

Pathways & Interactions for TSL Gene

No Data Available

Interacting Proteins for TSL Gene

Gene Ontology (GO) - Biological Process for TSL Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TSL Gene

Drugs & Compounds for TSL Gene

No Compound Related Data Available

Transcripts for TSL Gene

mRNA/cDNA for TSL Gene

(3) Additional mRNA sequences :

Unigene Clusters for TSL Gene

Testis-expressed, seven-twelve, leukemia:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TSL Gene

No ASD Table

Relevant External Links for TSL Gene

GeneLoc Exon Structure for
TSL

Expression for TSL Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TSL Gene

mRNA expression in normal human tissues for TSL Gene

SOURCE GeneReport for Unigene cluster for TSL Gene:

Hs.571330
genes like me logo Genes that share expression patterns with TSL: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSL Gene

Orthologs for TSL Gene

No data available for Orthologs and Evolution for TSL Gene

Paralogs for TSL Gene

No data available for Paralogs for TSL Gene

Variants for TSL Gene

Sequence variations from dbSNP and Humsavar for TSL Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000212443 -- 27,622,324(+) ACATA(C/T)CAAAA intron-variant
rs1000267370 -- 27,619,832(+) GACCA(A/C)ATATA intron-variant
rs1000347252 -- 27,622,256(+) AAAAA(A/G)TTAAA intron-variant
rs1000411731 -- 27,616,456(+) CTTCG(C/T)TGTTT intron-variant, nc-transcript-variant
rs1000809521 -- 27,614,259(+) ACACT(C/T)GCCAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TSL Gene

Variant ID Type Subtype PubMed ID
esv3612660 CNV loss 21293372
nsv7393 OTHER inversion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for TSL Gene

Disorders for TSL Gene

Relevant External Links for TSL

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TSL

No disorders were found for TSL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSL Gene

Publications for TSL Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 60

Products for TSL Gene

Sources for TSL Gene

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