Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TSL Gene

Subcategory (RNA class) for TSL Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for TSL Gene

  • Testis-Expressed, Seven-Twelve, Leukemia 3

External Ids for TSL Gene

Previous GeneCards Identifiers for TSL Gene

  • GC00U922257
  • GC07U902971

Summaries for TSL Gene

GeneCards Summary for TSL Gene

TSL (Testis-Expressed, Seven-Twelve, Leukemia) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSL Gene

Genomics for TSL Gene

Regulatory Elements for TSL Gene

Enhancers for TSL Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F027608 0.8 Ensembl ENCODE 0.4 -6.9 -6904 0.7 JUN ZNF316 SCRT2 NFE2 MAFK NFE2L2 RFX1 RNF2 MAFG CEBPB HIBADH TSL PIR36003
GH07F027606 1.6 Ensembl ENCODE 0.4 -9.0 -9000 2.7 PKNOX1 INSM2 FEZF1 BRCA1 RAD21 RARA RFX5 YY1 ZNF366 ZNF391 HIBADH TAX1BP1 TSL PIR36003
GH07F027602 0.7 FANTOM5 ENCODE 0.4 -13.1 -13127 1.1 ZNF263 PBX2 POU5F1 YY1 HIBADH ENSG00000253508 HOTTIP HOXA13 TSL PIR36003
GH07F027605 0.5 ENCODE 0.4 -10.6 -10602 0.1 KLF9 CHD1 ZNF384 TSL PIR36003
GH07F027603 0.5 ENCODE 0.4 -11.9 -11938 0.2 RFX1 RFX3 SCRT2 PRDM1 HIBADH HOTTIP HOXA13 ENSG00000253508 TSL PIR36003
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TSL on UCSC Golden Path with GeneCards custom track

Genomic Location for TSL Gene

Chromosome:
7
Start:
27,615,974 bp from pter
End:
27,627,492 bp from pter
Size:
11,519 bases
Orientation:
Plus strand

Genomic View for TSL Gene

Genes around TSL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSL Gene

Proteins for TSL Gene

Post-translational modifications for TSL Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSL Gene

Domains & Families for TSL Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TSL Gene

Function for TSL Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSL Gene

Localization for TSL Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TSL Gene

Pathways & Interactions for TSL Gene

SuperPathways for TSL Gene

No Data Available

Interacting Proteins for TSL Gene

Gene Ontology (GO) - Biological Process for TSL Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TSL Gene

Transcripts for TSL Gene

mRNA/cDNA for TSL Gene

(3) Additional mRNA sequences :

Unigene Clusters for TSL Gene

Testis-expressed, seven-twelve, leukemia:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TSL Gene

No ASD Table

Relevant External Links for TSL Gene

GeneLoc Exon Structure for
TSL

Expression for TSL Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TSL Gene

mRNA expression in normal human tissues for TSL Gene

SOURCE GeneReport for Unigene cluster for TSL Gene:

Hs.571330
genes like me logo Genes that share expression patterns with TSL: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TSL Gene

Orthologs for TSL Gene

No data available for Orthologs and Evolution for TSL Gene

Paralogs for TSL Gene

No data available for Paralogs for TSL Gene

Variants for TSL Gene

Sequence variations from dbSNP and Humsavar for TSL Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10951173 -- 27,623,279(+) caaca(A/C)actca intron-variant
rs1115346 -- 27,622,485(+) tcaac(A/G)aaaca intron-variant
rs1115347 -- 27,622,979(+) ggcct(A/G)tatac intron-variant
rs111978354 -- 27,616,882(+) TATAA(C/T)GTGTT intron-variant
rs112427995 -- 27,617,135(+) GTAAG(C/T)GGCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TSL Gene

Variant ID Type Subtype PubMed ID
esv3612660 CNV loss 21293372
nsv7393 OTHER inversion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for TSL Gene

Disorders for TSL Gene

Relevant External Links for TSL

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TSL

No disorders were found for TSL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSL Gene

Publications for TSL Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3 64

Products for TSL Gene

Sources for TSL Gene

Content
Loading form....