TSKU Gene
protein-coding GIFtS : 50
GCID: GC11 P076494
tsukushi, small leucine rich proteoglycan (Previous names: leucine rich repeat containing 54, tsukushin, tsukushi... ) (Previous symbol: LRRC54 )
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Aliasesfor TSKU gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Tsukushi, Small Leucine Rich Proteoglycan 1 2 Leucine-Rich Repeat-Containing Protein 542 3 E2IG41 2 3 5 E2-Induced Gene 4 Protein2 3 TSK1 2 3 5 Tsukushi Small Leucine Rich Proteoglycan Homolog (Xenopus Laevis)1 LRRC541 2 3 Tsukushi Homolog2 Leucine Rich Repeat Containing 541 2 Tsukushi Small Leucine Rich Proteoglycan Homolog2 Tsukushin1 Tsukushi3
Export aliases for TSKU gene to outside databases Previous GC identifers: GC11P076171 GC11P072791
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Summariesfor TSKU gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor TSKU gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000011.9 NC_018922.1 NT_167190.1 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TSKU gene promoter: COUP-TF1 AP-1 COUP Nkx5-1 Evi-1 Egr-4 GATA-1 GATA-2 AREB6 COUP-TF Other transcription factors Search SABiosciences Chromatin IP Primers for TSKU Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat TSKU
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 11q13.5 Ensembl cytogenetic band: 11q13.5 HGNC cytogenetic band: 11q13.5 TSKU Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11P076494: view genomic region
(about GC identifiers )
Start:
76,493,295 bp from pter
End:
76,509,198 bp from pter
Size:
15,904 bases
Orientation:
plus strand
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Proteinsfor TSKU gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: TSK_HUMAN, Q8WUA8 (See
protein sequence )Recommended Name: Tsukushin precursor Size : 353 amino acids; 37807 Da
Subcellular location : Secreted (Potential)
Secondary accessions : B3KQT7 Q6UXK1 Q9UG10 Q9UJX9Explore the universe of human proteins at neXtProt for TSKU: NX_Q8WUA8 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q8WUA8 TSKU Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_001245139.1 NP_056331.2 ENSEMBL proteins: ENSP00000435133 ENSP00000332668 ENSP00000434873 ENSP00000434847 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
IEA --
TSKU for ontologies About GeneDecksing TSKU Antibody Products: Assay Products for TSKU:
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Protein
Domains / Familiesfor TSKU gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
TSKU for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q8WUA8 ProtoNet protein and cluster: Q8WUA8
1 Blocks protein family : IPB000372 Cysteine-rich flanking region UniProtKB/Swiss-Prot: TSK_HUMAN, Q8WUA8 Similarity : Contains 10 LRR (leucine-rich) repeatsSimilarity : Contains 1 LRRNT domain
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Functionfor TSKU gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: TSK_HUMAN, Q8WUA8 Induction : By 17-beta-estradiol
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TSKU (see all 6 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TSKU (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: TSKU (NM_015516 ) Sino Biological Human cDNA Clone for TSKU DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TSKU Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TSKU
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TSKU
1 GenomeRNAi human phenotype for TSKU :Animal Models: 1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Tsku) :
TSKU for phenotypes About GeneDecksing
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Pathways & Interactionsfor TSKU gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for TSKU 1 Interacting protein for TSKU (Q8WUA8 2 , 3 ) via UniProtKB, MINT, STRING, and/or I2D About this table Gene Ontology (GO): 3 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0021540 corpus callosum morphogenesis
IEA -- GO:0021670 lateral ventricle development
IEA -- GO:0021960 anterior commissure morphogenesis
IEA --
TSKU for ontologies About GeneDecksing
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Drugs & Compoundsfor TSKU gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for TSKU Search CenterWatch for drugs/clinical trials and news about TSKU / TSK
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Transcriptsfor TSKU gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for TSKU gene (2 alternative transcripts): NM_001258210.1 NM_015516.3 Unigene Cluster for TSKU:
Tsukushi, small leucine rich proteoglycan Hs.8361 [show with all ESTs ] Unigene Representative Sequence: AK126536 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000533752 ENST00000333090 (uc001oxt.3 ) ENST00000525167 ENST00000527881 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TSKU (see all 6 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TSKU (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: TSKU (NM_015516 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TSKU Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TSKU
Additional cDNA sequence: AF191019.1 AK075476.1 AK091475.1 AK126536.1 AK313405.1 AL110276.1 AY358317.1 BC020975.1 BT007440.1
10 DOTS entries : DT.417669 DT.100777424
DT.100754481 DT.120701703 DT.91768837 DT.100777423 DT.91768832 DT.120701695 DT.120701697 DT.40215150 24/258 AceView cDNA sequences (see all 258 ):
AW612425 AA558470 BE786245 BU859186 CB051400 BQ919451 BX324380 AI884558 BM679949 BU846213 CB242473 AW183447 NM_015516 AI613032 BE312814 CA306394 AI074139 BM702062 BG056788 BF724678 AA335299 AA651701 BX324381 BM704369 GeneLoc Exon Structure
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Expression for TSKU gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section TSKU expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GGCATCAGGG
About this image TSKU expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table Stem Cell Differentiation: 2 LifeMap Cells Name Category PureStem™ progenitor Z1 (Embryonic Progenitor Cell)Definitive endoderm-like cells (A scalable, suspensi... )Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See TSKU Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for TSKU SOURCE GeneReport for Unigene cluster: Hs.8361 SABiosciences Custom PCR Arrays for TSKU Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TSKUBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat TSKU QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TSKU QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TSKU In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TSKU
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Orthologsfor TSKU gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for TSKU gene from 4/10 species (see all 10 ) About this table
ENSEMBL Gene Tree for TSKU (if available)TreeFam Gene Tree for TSKU (if available)
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Paralogsfor TSKU gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor TSKU gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 11 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for TSKU (76493295 - 76509198 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for TSKU: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TSKU
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Disorders
/ Diseasesfor TSKU gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
TSKU for disorders About GeneDecksing
OMIM gene information: 608015
OMIM disorders : --3 diseases for TSKU : About MalaCards systemic scleroderma scleroderma fibromyalgia 1 disease from the University of Copenhagen DISEASES database for TSKU :Fibromyalgia Export disorders for TSKU gene to outside databases
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Publicationsfor TSKU gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for TSKU gene, integrated from 9 sources (see all 11 ): (articles sorted by number of sources associating them with TSKU) Utopia : connect your pdf to the dynamic world of online information
Effects of estrogen on global gene expression: identification of novel targets of estrogen action. (PubMed id 11085516) 1 , 2 , 3 Charpentier A.H.... Aldaz C.M. (2000) Stromal expression of decorin, Semaphorin6D, SPARC, Sp routy1 and Tsukushi in developing prostate and decreased levels of decorin in pr ostate cancer. (PubMed id 22880013) 1 , 3 Henke A....Thomson A.A. (2012) Comparative analysis of gene regulation by the transc ription factor PPARalpha between mouse and human. (PubMed id 19710929) 1 , 3 Rakhshandehroo M....Kersten S. (2009) Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PubMed id 16303743) 1 , 2 Otsuki T....Isogai T. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 1 , 2 Clark H.F.... Gray A.M. (2003) The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005) 2 Bechtel S.... Schupp I. (2007) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006) Functional proteomics mapping of a human signaling pathway. (PubMed id 15231748) 1 Colland F....Gauthier J.M. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 Ota T.... Sugano S. (2004)
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External Searches for TSKU gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TSKU gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing TSKU gene
(According to HUGE )
About This Section --
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Specialized Databases showing TSKU gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for TSKU Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for TSKU gene: Search GeneIP for patents involving TSKU GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TSKU gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for TSKU OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for TSKU OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TSKU OriGene Protein Over-expression Lysate for TSKU Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for TSKU OriGene 3'-UTR Clone for TSKU OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TSKU OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TSKU Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for TSKU OriGene Custom Protein Services for TSKU OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TSKU QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TSKU QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat TSKU QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat TSKU QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TSKU QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TSKU
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TSKU Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TSKU
ThermoFisher Antibodies for TSKU
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TSKU
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