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Aliases for TSGA13 Gene

Aliases for TSGA13 Gene

  • Testis Specific 13 2 3 5

External Ids for TSGA13 Gene

Previous GeneCards Identifiers for TSGA13 Gene

  • GC07M128693
  • GC07M129755
  • GC07M129769
  • GC07M129703
  • GC07M129753
  • GC07M129810
  • GC07M129934
  • GC07M130004
  • GC07M130353
  • GC07M124668

Summaries for TSGA13 Gene

GeneCards Summary for TSGA13 Gene

TSGA13 (Testis Specific 13) is a Protein Coding gene.

Additional gene information for TSGA13 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSGA13 Gene

Genomics for TSGA13 Gene

GeneHancer (GH) Regulatory Elements for TSGA13 Gene

Promoters and enhancers for TSGA13 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I130686 Promoter 0.5 EPDnew 550.8 +0.9 867 0.1 TSGA13 COPG2
GH07I130667 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.4 +18.9 18920 2.2 HDGF PKNOX1 ATF1 ARID4B SIN3A GLI4 ZNF2 POLR2B ZNF766 GLIS2 COPG2 ZC3HC1 MKLN1 CPA5 PIR53705 TSGA13
GH07I130722 Enhancer 0.7 ENCODE 0.3 -34.7 -34696 0.2 CTCF RB1 ARNT BMI1 RAD21 RFX5 FOSL1 CC2D1A CTBP1 ARID2 CPA4 GC07P130732 TSGA13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TSGA13 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the TSGA13 gene promoter:

Genomic Locations for TSGA13 Gene

Genomic Locations for TSGA13 Gene
chr7:130,668,646-130,687,432
(GRCh38/hg38)
Size:
18,787 bases
Orientation:
Minus strand
chr7:130,353,486-130,372,268
(GRCh37/hg19)

Genomic View for TSGA13 Gene

Genes around TSGA13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSGA13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSGA13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSGA13 Gene

Proteins for TSGA13 Gene

  • Protein details for TSGA13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96PP4-TSG13_HUMAN
    Recommended name:
    Testis-specific gene 13 protein
    Protein Accession:
    Q96PP4
    Secondary Accessions:
    • B3KSC9

    Protein attributes for TSGA13 Gene

    Size:
    275 amino acids
    Molecular mass:
    31778 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TSGA13 Gene

Post-translational modifications for TSGA13 Gene

No Post-translational modifications

Other Protein References for TSGA13 Gene

No data available for DME Specific Peptides for TSGA13 Gene

Domains & Families for TSGA13 Gene

Gene Families for TSGA13 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for TSGA13 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TSGA13 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TSGA13: view

No data available for UniProtKB/Swiss-Prot for TSGA13 Gene

Function for TSGA13 Gene

Phenotypes From GWAS Catalog for TSGA13 Gene

Phenotypes for TSGA13 Gene

genes like me logo Genes that share phenotypes with TSGA13: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSGA13 Gene

Localization for TSGA13 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TSGA13 gene
Compartment Confidence
nucleus 3
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSGA13 Gene

Pathways & Interactions for TSGA13 Gene

SuperPathways for TSGA13 Gene

No Data Available

Interacting Proteins for TSGA13 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000348996%0d%0a9606.ENSP00000244930%0d%0a
Selected Interacting proteins: ENSP00000348996 Q96PP4-TSG13_HUMAN for TSGA13 Gene via STRING IID

Gene Ontology (GO) - Biological Process for TSGA13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1903955 positive regulation of protein targeting to mitochondrion IMP 24270810
genes like me logo Genes that share ontologies with TSGA13: view

No data available for Pathways by source and SIGNOR curated interactions for TSGA13 Gene

Drugs & Compounds for TSGA13 Gene

No Compound Related Data Available

Transcripts for TSGA13 Gene

Unigene Clusters for TSGA13 Gene

Testis specific, 13:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSGA13 Gene

No ASD Table

Relevant External Links for TSGA13 Gene

GeneLoc Exon Structure for
TSGA13
ECgene alternative splicing isoforms for
TSGA13

Expression for TSGA13 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TSGA13 Gene

mRNA differential expression in normal tissues according to GTEx for TSGA13 Gene

This gene is overexpressed in Testis (x52.8).

NURSA nuclear receptor signaling pathways regulating expression of TSGA13 Gene:

TSGA13

SOURCE GeneReport for Unigene cluster for TSGA13 Gene:

Hs.592266

mRNA Expression by UniProt/SwissProt for TSGA13 Gene:

Q96PP4-TSG13_HUMAN
Tissue specificity: Testis-specific.

Evidence on tissue expression from TISSUES for TSGA13 Gene

  • Nervous system(4.1)
genes like me logo Genes that share expression patterns with TSGA13: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSGA13 Gene

Orthologs for TSGA13 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TSGA13 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TSGA13 33 34
  • 99.39 (n)
cow
(Bos Taurus)
Mammalia TSGA13 33 34
  • 82.29 (n)
mouse
(Mus musculus)
Mammalia Tsga13 33 16 34
  • 74.66 (n)
rat
(Rattus norvegicus)
Mammalia Tsga13 33
  • 73.51 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia TSGA13 34
  • 45 (a)
OneToOne
Species where no ortholog for TSGA13 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TSGA13 Gene

ENSEMBL:
Gene Tree for TSGA13 (if available)
TreeFam:
Gene Tree for TSGA13 (if available)

Paralogs for TSGA13 Gene

No data available for Paralogs for TSGA13 Gene

Variants for TSGA13 Gene

Sequence variations from dbSNP and Humsavar for TSGA13 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000388437 -- 130,678,101(-) G/A intron_variant
rs1000636205 -- 130,672,229(-) A/G intron_variant
rs1000938636 -- 130,682,011(-) G/A intron_variant
rs1001384129 -- 130,668,858(-) C/T 3_prime_UTR_variant
rs1001400779 -- 130,688,510(-) T/A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for TSGA13 Gene

Variant ID Type Subtype PubMed ID
nsv1115005 CNV deletion 24896259
nsv1126808 CNV deletion 24896259
nsv831132 CNV gain+loss 17160897

Variation tolerance for TSGA13 Gene

Residual Variation Intolerance Score: 53.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.48; 28.84% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for TSGA13 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSGA13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TSGA13 Gene

Disorders for TSGA13 Gene

Additional Disease Information for TSGA13

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for TSGA13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSGA13 Gene

Publications for TSGA13 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 3 4 58
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 58
  5. Histochemical analysis of testis specific gene 13 in human normal and malignant tissues. (PMID: 26111495) Zhao H … Su J (Cell and tissue research 2015) 3 58

Products for TSGA13 Gene

Sources for TSGA13 Gene

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