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Aliases for TSGA13 Gene

Aliases for TSGA13 Gene

  • Testis Specific 13 2 3 5

External Ids for TSGA13 Gene

Previous GeneCards Identifiers for TSGA13 Gene

  • GC07M128693
  • GC07M129755
  • GC07M129769
  • GC07M129703
  • GC07M129753
  • GC07M129810
  • GC07M129934
  • GC07M130004
  • GC07M130353
  • GC07M124668

Summaries for TSGA13 Gene

GeneCards Summary for TSGA13 Gene

TSGA13 (Testis Specific 13) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSGA13 Gene

Genomics for TSGA13 Gene

Regulatory Elements for TSGA13 Gene

Enhancers for TSGA13 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around TSGA13 on UCSC Golden Path with GeneCards custom track

Genomic Location for TSGA13 Gene

Chromosome:
7
Start:
130,668,646 bp from pter
End:
130,687,432 bp from pter
Size:
18,787 bases
Orientation:
Minus strand

Genomic View for TSGA13 Gene

Genes around TSGA13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSGA13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSGA13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSGA13 Gene

Proteins for TSGA13 Gene

  • Protein details for TSGA13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96PP4-TSG13_HUMAN
    Recommended name:
    Testis-specific gene 13 protein
    Protein Accession:
    Q96PP4
    Secondary Accessions:
    • B3KSC9

    Protein attributes for TSGA13 Gene

    Size:
    275 amino acids
    Molecular mass:
    31778 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TSGA13 Gene

Proteomics data for TSGA13 Gene at MOPED

Post-translational modifications for TSGA13 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TSGA13 Gene

No data available for DME Specific Peptides for TSGA13 Gene

Domains & Families for TSGA13 Gene

Protein Domains for TSGA13 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TSGA13 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TSGA13: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TSGA13 Gene

Function for TSGA13 Gene

Phenotypes for TSGA13 Gene

genes like me logo Genes that share phenotypes with TSGA13: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSGA13 Gene

Localization for TSGA13 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TSGA13 Gene COMPARTMENTS Subcellular localization image for TSGA13 gene
Compartment Confidence
nucleus 3
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TSGA13 Gene

Pathways & Interactions for TSGA13 Gene

SuperPathways for TSGA13 Gene

No Data Available

Interacting Proteins for TSGA13 Gene

Gene Ontology (GO) - Biological Process for TSGA13 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TSGA13 Gene

Drugs & Compounds for TSGA13 Gene

No Compound Related Data Available

Transcripts for TSGA13 Gene

Unigene Clusters for TSGA13 Gene

Testis specific, 13:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TSGA13 Gene

No ASD Table

Relevant External Links for TSGA13 Gene

GeneLoc Exon Structure for
TSGA13
ECgene alternative splicing isoforms for
TSGA13

Expression for TSGA13 Gene

mRNA expression in normal human tissues for TSGA13 Gene

mRNA differential expression in normal tissues according to GTEx for TSGA13 Gene

This gene is overexpressed in Testis (x52.8).

SOURCE GeneReport for Unigene cluster for TSGA13 Gene Hs.592266

mRNA Expression by UniProt/SwissProt for TSGA13 Gene

Q96PP4-TSG13_HUMAN
Tissue specificity: Testis-specific.
genes like me logo Genes that share expression patterns with TSGA13: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for TSGA13 Gene

Orthologs for TSGA13 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TSGA13 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TSGA13 35
  • 82.29 (n)
  • 70.85 (a)
TSGA13 36
  • 71 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tsga13 35
  • 74.66 (n)
  • 59.78 (a)
Tsga13 16
Tsga13 36
  • 59 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia TSGA13 35
  • 99.39 (n)
  • 99.27 (a)
TSGA13 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tsga13 35
  • 73.51 (n)
  • 59.33 (a)
platypus
(Ornithorhynchus anatinus)
Mammalia TSGA13 36
  • 45 (a)
OneToOne
Species with no ortholog for TSGA13:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TSGA13 Gene

ENSEMBL:
Gene Tree for TSGA13 (if available)
TreeFam:
Gene Tree for TSGA13 (if available)

Paralogs for TSGA13 Gene

No data available for Paralogs for TSGA13 Gene

Variants for TSGA13 Gene

Sequence variations from dbSNP and Humsavar for TSGA13 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1038638 -- 130,676,252(-) TGAAA(C/T)GTGTG intron-variant
rs1155219 -- 130,687,972(+) GAAGC(A/G)CTAAC upstream-variant-2KB
rs6953927 -- 130,672,048(+) accac(A/G)cctgg intron-variant
rs6954237 -- 130,672,180(+) ACACC(A/G)CGCCC intron-variant
rs6957014 -- 130,688,638(+) acaca(A/C/G)aaaaa upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TSGA13 Gene

Variant ID Type Subtype PubMed ID
nsv831132 CNV Gain+Loss 17160897

Variation tolerance for TSGA13 Gene

Residual Variation Intolerance Score: 53.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.48; 28.84% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for TSGA13 Gene

Disorders for TSGA13 Gene

Relevant External Links for TSGA13

Genetic Association Database (GAD)
TSGA13
Human Genome Epidemiology (HuGE) Navigator
TSGA13
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TSGA13

No disorders were found for TSGA13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSGA13 Gene

Publications for TSGA13 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer. (PMID: 25086665) Wolpin B.M. … Amundadottir L.T. (Nat. Genet. 2014) 3
  4. High-content genome-wide RNAi screens identify regulators of parkin upstream of mitophagy. (PMID: 24270810) Hasson S.A. … Youle R.J. (Nature 2013) 3
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3

Products for TSGA13 Gene

Sources for TSGA13 Gene

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