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Aliases for TSGA10IP Gene

Aliases for TSGA10IP Gene

  • Testis Specific, 10 Interacting Protein 2 3
  • Tsga10-Interacting Protein 3 4
  • Testis-Specific Protein 10-Interacting Protein 3
  • FAM161C 3

External Ids for TSGA10IP Gene

Previous GeneCards Identifiers for TSGA10IP Gene

  • GC11P065489
  • GC11P065469
  • GC11P065713
  • GC11P062039

Summaries for TSGA10IP Gene

GeneCards Summary for TSGA10IP Gene

TSGA10IP (Testis Specific, 10 Interacting Protein) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSGA10IP Gene

Genomics for TSGA10IP Gene

Regulatory Elements for TSGA10IP Gene

Genomic Location for TSGA10IP Gene

Start:
65,945,445 bp from pter
End:
65,959,963 bp from pter
Size:
14,519 bases
Orientation:
Plus strand

Genomic View for TSGA10IP Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TSGA10IP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSGA10IP Gene

Proteins for TSGA10IP Gene

  • Protein details for TSGA10IP Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3SY00-T10IP_HUMAN
    Recommended name:
    Testis-specific protein 10-interacting protein
    Protein Accession:
    Q3SY00
    Secondary Accessions:
    • Q3SXZ9
    • Q3SY01
    • Q96M26

    Protein attributes for TSGA10IP Gene

    Size:
    556 amino acids
    Molecular mass:
    62381 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for TSGA10IP Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TSGA10IP Gene

Proteomics data for TSGA10IP Gene at MOPED

Post-translational modifications for TSGA10IP Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TSGA10IP Gene

No data available for DME Specific Peptides for TSGA10IP Gene

Domains for TSGA10IP Gene

Protein Domains for TSGA10IP Gene

ProtoNet:

Suggested Antigen Peptide Sequences for TSGA10IP Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TSGA10IP: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TSGA10IP Gene

Function for TSGA10IP Gene

Gene Ontology (GO) - Molecular Function for TSGA10IP Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with TSGA10IP: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TSGA10IP Gene

Localization for TSGA10IP Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TSGA10IP Gene COMPARTMENTS Subcellular localization image for TSGA10IP gene
Compartment Confidence
mitochondrion 2
cytosol 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TSGA10IP Gene

Pathways for TSGA10IP Gene

SuperPathways for TSGA10IP Gene

No Data Available

Interacting Proteins for TSGA10IP Gene

Gene Ontology (GO) - Biological Process for TSGA10IP Gene

None

No data available for Pathways by source for TSGA10IP Gene

Transcripts for TSGA10IP Gene

mRNA/cDNA for TSGA10IP Gene

(3) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TSGA10IP Gene

Testis specific, 10 interacting protein:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TSGA10IP Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7
SP1: - - - -
SP2: -
SP3:

Relevant External Links for TSGA10IP Gene

GeneLoc Exon Structure for
TSGA10IP
ECgene alternative splicing isoforms for
TSGA10IP

Expression for TSGA10IP Gene

mRNA expression in normal human tissues for TSGA10IP Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TSGA10IP Gene

This gene is overexpressed in Testis (37.3).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for TSGA10IP Gene

SOURCE GeneReport for Unigene cluster for TSGA10IP Gene Hs.350671

genes like me logo Genes that share expressions with TSGA10IP: view

No data available for mRNA Expression by UniProt/SwissProt for TSGA10IP Gene

Orthologs for TSGA10IP Gene

This gene was present in the common ancestor of chordates.

Orthologs for TSGA10IP Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TSGA10IP 35
  • 97.51 (n)
  • 95.98 (a)
cow
(Bos Taurus)
Mammalia TSGA10IP 35
  • 78.8 (n)
  • 68.12 (a)
TSGA10IP 36
  • 67 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TSGA10IP 35
  • 80.28 (n)
  • 66.24 (a)
TSGA10IP 36
  • 64 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tsga10ip 35
  • 72.83 (n)
  • 59.71 (a)
Tsga10ip 16
Tsga10ip 36
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TSGA10IP 36
  • 36 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tsga10ip 35
  • 72.13 (n)
  • 60.45 (a)
lizard
(Anolis carolinensis)
Reptilia TSGA10IP 36
  • 24 (a)
OneToOne
Species with no ortholog for TSGA10IP:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TSGA10IP Gene

ENSEMBL:
Gene Tree for TSGA10IP (if available)
TreeFam:
Gene Tree for TSGA10IP (if available)

Paralogs for TSGA10IP Gene

No data available for Paralogs for TSGA10IP Gene

Variants for TSGA10IP Gene

Sequence variations from dbSNP and Humsavar for TSGA10IP Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs470192 -- 65,956,820(-) tgggc(A/G)cggtg intron-variant
rs483834 -- 65,948,216(+) AAGAG(A/G)TGCTT intron-variant
rs484752 -- 65,948,315(+) atcca(C/T)ccacc intron-variant
rs532708 -- 65,956,702(-) aaata(C/G)aaaaa intron-variant
rs540583 -- 65,952,620(+) atttt(G/T)tgtat intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TSGA10IP Gene

Variant ID Type Subtype PubMed ID
dgv393e1 CNV Complex 17122850
dgv1185n71 CNV Loss 21882294
nsv832191 CNV Loss 17160897
dgv1186n71 CNV Loss 21882294
esv2667131 CNV Deletion 23128226

Relevant External Links for TSGA10IP Gene

HapMap Linkage Disequilibrium report
TSGA10IP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TSGA10IP Gene

Disorders for TSGA10IP Gene

No disorders were found for TSGA10IP Gene.

No data available for UniProtKB/Swiss-Prot for TSGA10IP Gene

Publications for TSGA10IP Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 4
  2. Systematic screening reveals a role for BRCA1 in the response to transcription-associated DNA damage. (PMID: 25184681) Hill S.J. … Livingston D.M. (Genes Dev. 2014) 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 4

Products for TSGA10IP Gene

Sources for TSGA10IP Gene

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