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Aliases & Descriptions for TSG101
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Descriptions ESCRT-I complex subunit TSG101 3 tumor susceptibility gene 10 1 tumor susceptibility gene 101 2 tumor susceptibility protein 2
Search outside databases for aliases for TSG101 genePrevious GC identifers: GC11M019623 GC11M019444 GC11M018541 GC11M018466
Summaries for TSG101 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for TSG101 : The protein encoded by this gene belongs to a group of apparently inactive homologs ofubiquitin-conjugating enzymes. The gene product contains a coiled-coil domain that interacts withstathmin, a cytosolic phosphoprotein implicated in tumorigenesis. The protein may play a role incell growth and differentiation and act as a negative growth regulator. In vitro steady-stateexpression of this tumor susceptibility gene appears to be important for maintenance of genomicstability and cell cycle regulation. Mutations and alternative splicing in this gene occur in highfrequency in breast cancer and suggest that defects occur during breast cancer tumorigenesisand/or progression. [provided by RefSeq] UniProtKB/Swiss-Prot: TS101_HUMAN, Q99816 Function : Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Binds toubiquitinated cargo proteins and is required for the sorting of endocytic ubiquitinated cargosinto multivesicular bodies (MVBs). Mediates the association between the ESCRT-0 and ESCRT-Icomplex. Required for completion of cytokinesis; the function requires CEP55. May be involved incell growth and differentiation. Acts as a negative growth regulator. Involved in the budding ofmany viruses through an interaction with viral proteins that contain a late-budding motifP-[ST]-A-P. This interaction is essential for viral particle budding of numerous retroviruses
Gene Wiki entry for TSG101
Genomic Location for TSG101
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the TSG101 gene Entrez Gene cytogenetic band: 11p15 Ensembl cytogenetic band: 11p15.1 HGNC cytogenetic band: 11p15 TSG101 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11M018458:
(about GC identifiers )
Start:
18,458,434 bp from pter
End:
18,505,065 bp from pter
Size:
46,632 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000011.8 NT_009237.17 Proteins for TSG101
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: TS101_HUMAN, Q99816 (See
protein sequence )Recommended Name: Tumor susceptibility gene 101 protein Size : 390 amino acids; 43944 Da
Subunit : Component of the ESCRT-I complex (endosomal sorting complex required for transport I)which consists of TSG101, VPS28, a VPS37 protein (VPS37A to -D) and a FAM125/MVB12 protein(FAM125A or -B) in a 1:1:1:1 stoechiometry. Interacts with VPS37A, VPS37B and VPS37C. Interactswith ubiquitin, stathmin, GMCL, DMAP1 and AATF (By similarity). Interacts with HGS; theinteraction mediates the association with the ESCRT-0 complex. Interacts with GGA1 and GGA3.Interacts (via UEV domain) with PDCD6IP/AIP1. Interacts with VPS28, SNF8 and VPS36.Self-associates. Interacts with FAM125A/MVB12A; the association appears to be mediated by theTSG101-VPS37 binary subcomplex. Interacts with VPS37D. Interacts with LRSAM1. Interacts withCEP55; the interaction is required for cytokinesis but not for viral budding. Interacts with HIV-1p6. Interacts with human spumavirus Gag. Interacts with HTLV-1 Gag. Interacts with Ebola virusVP40. Interacts with EIAV p9; the interaction has been shown in vitro
Subcellular location : Cytoplasm. Membrane; Peripheral membrane protein. Nucleus. Late endosomemembrane; Peripheral membrane protein. Note=Mainly cytoplasmic. Membrane-associated when activeand soluble when inactive. Depending on the stage of the cell cycle, detected in the nucleus.Colocalized with CEP55 in the midbody during cytokinesis
PDB structures from and Proteopedia : 1KPP (3D)
 1KPQ (3D)
 1M4P (3D)
 1M4Q (3D)
 1S1Q (3D)
 2F0R (3D)
 
Secondary accessions : Q9BUM5Alternative splicing : 2 isoforms : Q99816-1 Q99816-2 (Additional isoforms seem to exist. Several shorter isoforms are detected in primary breast cancers and other tumors)
Post-translational modifications:
Monoubiquitinated at multiple sites by LRSAM1. Ubiquitination inactivates it, possibly byregulating its shuttling between an active membrane-bound protein and an inactive soluble form1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_006283.1 ENSEMBL proteins: ENSP00000349721 ENSP00000251968 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
):
About this table Antibodies for TSG101: Assays for TSG101:
Protein
Domains/ Families for TSG101(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q99816 ProtoNet protein and cluster: Q99816
2 Blocks protein families : IPB000608 Ubiquitin-conjugating enzymes IPB008883 Tumour susceptibility gene 101 UniProtKB/Swiss-Prot: TS101_HUMAN, Q99816 Domain : The UEV domain is required for the interaction of the complex with ubiquitin. It alsomediates the interaction with PTAP/PSAP motifs of HIV-1 P6 protein and human spumaretrovirus Gagprotein Domain : The coiled coil domain may interact with stathminDomain : The UEV domain binds ubiquitin and P-[ST]-A-P peptide motif independentlySimilarity : Belongs to the ubiquitin-conjugating enzyme family. UEV subfamilySimilarity : Contains 1 SB (steadiness box) domainSimilarity : Contains 1 UEV (ubiquitin E2 variant) domain
Gene Function for TSG101
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006292 Applied Biosystems Silencer ® siRNAs for TSG101 Sigma-Aldrich siRNA and siRNA Panels for TSG101 Sigma-Aldrich shRNA Panels and shRNA for TSG101 Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_006292                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006292                                  untagged cDNA clone in CMV expression vector: NM_006292  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_006292 UniProtKB/Swiss-Prot: TS101_HUMAN, Q99816 Function : Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Binds toubiquitinated cargo proteins and is required for the sorting of endocytic ubiquitinated cargosinto multivesicular bodies (MVBs). Mediates the association between the ESCRT-0 and ESCRT-Icomplex. Required for completion of cytokinesis; the function requires CEP55. May be involved incell growth and differentiation. Acts as a negative growth regulator. Involved in the budding ofmany viruses through an interaction with viral proteins that contain a late-budding motifP-[ST]-A-P. This interaction is essential for viral particle budding of numerous retroviruses
Genatlas biochemistry entry for TSG101 :murine tumor susceptibility gene 101 (Tsg101) homolog,43kDa,transcriptional suppressor for ESRR andother nuclear hormone receptors,mutated in primary breast carcinoma,aberrantly spliced in smallcell lung carcinoma and in cervical,endometrial,hormone refractory prostate cancer,involved incell cycle regulation
8 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Tsg101) :5 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for TSG101
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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3 Sigma-Aldrich "Your Favorite Gene" Pathways for TSG101 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for TSG101 5/54 Interacting proteins for TSG101 (ENSP00000251968 3 Q99816 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 54
)About this table 5/11 Gene Ontology (GO) biological process terms (links to tree view) (see all 11
):
GO ID Qualified GO term Evidence PubMed IDs GO:0001558 regulation of cell growth
IEA -- GO:0007050 cell cycle arrest
IEA -- GO:0008285 negative regulation of cell proliferation
IEA -- GO:0015031 protein transport
IEA -- GO:0030216 keratinocyte differentiation
IEA --
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Drugs & Compounds for TSG101 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for TSG101 3 Novoseek chemical compound relationships for TSG101 gene
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Transcripts for TSG101(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_006292 Sigma-Aldrich siRNA and siRNA Panels for TSG101 Sigma-Aldrich shRNA Panels and shRNA for TSG101 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_006292
REFSEQ mRNAs for TSG101 gene: NM_006292.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_006292
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_006292                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_006292                                  untagged cDNA clone in CMV expression vector: NM_006292  
Additional cDNA sequence: AK130787.1 AY207473.1 AY207474.1 BC002487.1 CR590335.1 CR590804.1 CR594582.1 CR596481.1 CR598203.1 CR604898.1 CR606222.1 CR617651.1 CR619803.1 CR621064.1 CR623726.1 U82130.1
14 DOTS entries : DT.453312 DT.100878565 DT.95255424 DT.40111610 DT.100878556 DT.91759345 DT.95255430 DT.75123290 DT.100704034 DT.100061070 DT.120699775 DT.40123689 DT.65288214 DT.91759346
24/365 AceView cDNA sequences (see all 365
):BI906734 CB123589 BP335705 BE465282 AL522502 BM771437 BG424979 CA843510 BG943357 AY207474 CA488886 AL553112 CR621064 BM838498 BM847812 CD172428 AW189684 AA480013 CB111114 AW304361 CR617651 CB528488 AW189724 CD672200
highest scoring ESTs for TSG101 :U82130 AI929637 AK130787 AL525128 AL548035 AL555960 AL574901 AL597660 AU099471 AU138453
Unigene Cluster for TSG101: Tumor susceptibility gene 101 Hs.523512 [show with all ESTs ] Unigene Representative Sequence: BM542397 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations : ENST00000357193
ENST00000251968
Expression for TSG101
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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TSG101 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for TSG101 1 / 2 / 3
3 probe-sets matching TSG101 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TACGTCTTCTSOURCE GeneReport for Unigene cluster: Hs.523512 Expression variation in blood from EXPOLDB for TSG101
UniProtKB/Swiss-Prot: TS101_HUMAN, Q99816 Tissue specificity : Heart, brain, placenta, lung, liver, skeletal, kidney and pancreas
Orthologs for TSG101
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for TSG101 gene from 5/15 species (see all 15
)
About this table Species with no ortholog for TSG101 ENSEMBL Gene Tree for TSG101 Paralogs for TSG101 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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--
SNPs/Variants for TSG101 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for TSG101 (up to first 250kb)
Disorders & Mutations for TSG101
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 601387
10/21 Novoseek disease relationships for TSG101 gene (see all 21
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
immunodeficiency
56.37
17
12388682 (2), 16809281 (2), 17182674 (2), 12915533 (1) (see all 14 )
tumors
40.68
90
11838966 (5), 10618725 (4), 9588212 (4), 14991575 (3) (see all 44 )
breast cancer
40.25
43
10930114 (4), 9019400 (4), 9849457 (3), 9652749 (3) (see all 24 )
leukemia t-cell
38.69
1
14581525 (1)
cervical carcinoma
29.55
4
10505033 (2), 10027311 (1)
charcot-marie-tooth disease
27.54
2
15776429 (1), 16118794 (1)
leukemia
24.41
8
10664246 (3), 14526201 (1), 9722303 (1), 12743307 (1) (see all 5 )
ovarian cancer
23.47
18
17606716 (5), 9773405 (4), 17110434 (3), 9530348 (1) (see all 5 )
somatic mutations
23.30
2
9253709 (1), 9366528 (1)
cancer
18.83
23
17369844 (3), 9652749 (2), 10618725 (1), 10202180 (1) (see all 14 )
About this table Human Genome Epidemiology Navigator: TSG101 (1 document)Tumor Gene Database : TSG101 Breast Cancer Gene Database : TSG101
Medical News for TSG101 (Possibly Related Articles in
Doctor's Guide )
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Publications for TSG101 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/176 PubMed articles for TSG101 gene (see all 176
): The TSG101 tumor susceptibility gene is located in chromosome 11 band p15 and is mutated in human breast cancer. (PubMed id 9019400) 1, 2, 3, 4 Li L.... Cohen S.N. (1997) Aberrant splicing of the TSG101 and FHIT genes occurs frequently in multiple malignancies and in normal tissues and mimics alterations previously described in tumours. (PubMed id 9366528) 1, 3, 4 Gayther S.A.... Caldas C. (1997) Genomic architecture and transcriptional activation of the mouse and human tumor susceptibility gene TSG101: common types of shorter transcripts are true alternative splice variants. (PubMed id 9840940) 1, 3, 4 Wagner K.-U....Hennighausen L. (1998) HIV Gag mimics the Tsg101-recruiting activity of the human Hrs protein. (PubMed id 12900394) 1, 3, 4 Pornillos O....Sundquist W.I. (2003) PPPYVEPTAP motif is the late domain of human T-cell leukemia virus type 1 Gag and mediates its functional interaction with cellular proteins Nedd4 and Tsg101 corrected. (PubMed id 14581525) 1, 3, 4 Bouamr F.... Goff S.P. (2003) TSG101 interaction with HRS mediates endosomal trafficking and receptor down-regulation. (PubMed id 12802020) 1, 3, 4 Lu Q....Cohen S.N. (2003) Identification of human VPS37C, a component of endosomal sorting complex required for transport-I important for viral budding. (PubMed id 15509564) 1, 3, 4 Eastman S.W.... Bieniasz P.D. (2005) Structure and functional interactions of the Tsg101 UEV domain. (PubMed id 12006492) 1, 3, 4 Pornillos O.W....Sundquist W.I. (2002) Human ESCRT and ALIX proteins interact with proteins of the midbody and function in cytokinesis. (PubMed id 17853893) 1, 3, 4 Morita E....Sundquist W.I. (2007) The human endosomal sorting complex required for transport (ESCRT-I) and its role in HIV-1 budding. (PubMed id 15218037) 1, 3, 4 Stuchell M.D....Sundquist W.I. (2004)
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Genome Databases showing TSG101
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing TSG101
(According to HUGE )
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Specialized Databases showing TSG101 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for TSG101 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for TSG101:
Search Tocris compounds for TSG101
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009