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Aliases for TSG1 Gene

Subcategory (RNA class) for TSG1 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for TSG1 Gene

  • Tumor Suppressor TSG1 3

External Ids for TSG1 Gene

Previous GeneCards Identifiers for TSG1 Gene

  • GC06U900867
  • GC06P094416

Summaries for TSG1 Gene

GeneCards Summary for TSG1 Gene

TSG1 (Tumor Suppressor TSG1) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSG1 Gene

Genomics for TSG1 Gene

Regulatory Elements for TSG1 Gene

Enhancers for TSG1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G093783 1.3 FANTOM5 ENCODE dbSUPER 0.2 +79.0 79044 4.7 GTF2F1 JUN TEAD4 MAX CHD7 ETS1 POLR2A RCOR1 FOS MAFK ENSG00000280451 TSG1
GH06G093778 0.7 Ensembl ENCODE 0.2 +72.1 72109 0.9 CTCF MNT RAD21 ENSG00000280451 TSG1
GH06G093799 0.3 FANTOM5 0.2 +92.2 92229 0.4 ENSG00000280451 TSG1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TSG1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TSG1 Gene

Chromosome:
6
Start:
93,707,083 bp from pter
End:
93,776,481 bp from pter
Size:
69,399 bases
Orientation:
Plus strand

Genomic View for TSG1 Gene

Genes around TSG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSG1 Gene

Proteins for TSG1 Gene

Post-translational modifications for TSG1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSG1 Gene

Domains & Families for TSG1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TSG1 Gene

Function for TSG1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSG1 Gene

Localization for TSG1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TSG1 Gene

Pathways & Interactions for TSG1 Gene

No Data Available

Interacting Proteins for TSG1 Gene

Gene Ontology (GO) - Biological Process for TSG1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TSG1 Gene

Transcripts for TSG1 Gene

mRNA/cDNA for TSG1 Gene

(9) Additional mRNA sequences :

Unigene Clusters for TSG1 Gene

Tumor suppressor TSG1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TSG1 Gene

No ASD Table

Relevant External Links for TSG1 Gene

GeneLoc Exon Structure for
TSG1

Expression for TSG1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TSG1 Gene

mRNA expression in normal human tissues for TSG1 Gene

SOURCE GeneReport for Unigene cluster for TSG1 Gene:

Hs.509936
genes like me logo Genes that share expression patterns with TSG1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSG1 Gene

Orthologs for TSG1 Gene

No data available for Orthologs and Evolution for TSG1 Gene

Paralogs for TSG1 Gene

No data available for Paralogs for TSG1 Gene

Variants for TSG1 Gene

Sequence variations from dbSNP and Humsavar for TSG1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000060790 -- 93,751,743(+) CTCCT(C/T)GACTT intron-variant
rs1000161731 -- 93,742,279(+) AAACT(A/G)AAGAG intron-variant
rs1000180151 -- 93,745,619(+) TTGGG(A/G)TTATG intron-variant
rs1000196474 -- 93,735,849(+) GTGTG(C/G)CAGGT intron-variant
rs1000287428 -- 93,741,993(+) CTTCA(A/G)CAAAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TSG1 Gene

Variant ID Type Subtype PubMed ID
dgv6093n100 CNV loss 25217958
esv2763946 CNV loss 21179565
nsv1028896 CNV gain 25217958
nsv517329 CNV gain+loss 19592680
nsv5397 CNV deletion 18451855
nsv604164 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for TSG1 Gene

Disorders for TSG1 Gene

Relevant External Links for TSG1

Genetic Association Database (GAD)
TSG1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TSG1

No disorders were found for TSG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSG1 Gene

Publications for TSG1 Gene

  1. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q. … O'Donnell C.J. (BMC Med. Genet. 2007) 46 64
  2. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan R.S. … Benjamin E.J. (BMC Med. Genet. 2007) 46 64
  3. Characterization of frequently deleted 6q locus in prostate cancer. (PMID: 17132090) Sun M. … Srivastava S. (DNA Cell Biol. 2006) 3 64

Products for TSG1 Gene

Sources for TSG1 Gene

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