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Aliases for TSG1 Gene

Subcategory (RNA class) for TSG1 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for TSG1 Gene

  • Tumor Suppressor TSG1 3

External Ids for TSG1 Gene

Previous GeneCards Identifiers for TSG1 Gene

  • GC06U900867
  • GC06P094416

Summaries for TSG1 Gene

GeneCards Summary for TSG1 Gene

TSG1 (Tumor Suppressor TSG1) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for TSG1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSG1 Gene

Genomics for TSG1 Gene

GeneHancer (GH) Regulatory Elements for TSG1 Gene

Promoters and enhancers for TSG1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I093783 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.2 +79.0 79043 4.7 USF1 JUN MAX CEBPB EP300 ETS1 SP1 JUND POLR2A POU5F1 ENSG00000280451 TSG1
GH06I093778 Enhancer 0.6 Ensembl ENCODE 0.2 +72.1 72108 0.9 CTCF MNT RAD21 ENSG00000280451 TSG1
GH06I093799 Enhancer 0.2 FANTOM5 0.2 +92.2 92228 0.4 ENSG00000280451 TSG1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TSG1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the TSG1 gene promoter:

Genomic Locations for TSG1 Gene

Genomic Locations for TSG1 Gene
chr6:93,707,083-93,776,481
(GRCh38/hg38)
Size:
69,399 bases
Orientation:
Plus strand
chr6:94,416,801-94,486,199
(GRCh37/hg19)

Genomic View for TSG1 Gene

Genes around TSG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSG1 Gene

Function for TSG1 Gene

Phenotypes From GWAS Catalog for TSG1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSG1 Gene

Localization for TSG1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TSG1 Gene

Pathways & Interactions for TSG1 Gene

No Data Available

Interacting Proteins for TSG1 Gene

Gene Ontology (GO) - Biological Process for TSG1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TSG1 Gene

Drugs & Compounds for TSG1 Gene

No Compound Related Data Available

Transcripts for TSG1 Gene

mRNA/cDNA for TSG1 Gene

(9) Additional mRNA sequences :

Unigene Clusters for TSG1 Gene

Tumor suppressor TSG1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TSG1 Gene

No ASD Table

Relevant External Links for TSG1 Gene

GeneLoc Exon Structure for
TSG1

Expression for TSG1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TSG1 Gene

mRNA expression in normal human tissues for TSG1 Gene

SOURCE GeneReport for Unigene cluster for TSG1 Gene:

Hs.509936
genes like me logo Genes that share expression patterns with TSG1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TSG1 Gene

Orthologs for TSG1 Gene

No data available for Orthologs and Evolution for TSG1 Gene

Paralogs for TSG1 Gene

No data available for Paralogs for TSG1 Gene

Variants for TSG1 Gene

Sequence variations from dbSNP and Humsavar for TSG1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000060790 -- 93,751,743(+) C/T intron_variant
rs1000161731 -- 93,742,279(+) A/G intron_variant
rs1000180151 -- 93,745,619(+) A/G intron_variant
rs1000196474 -- 93,735,849(+) C/G intron_variant
rs1000287428 -- 93,741,993(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TSG1 Gene

Variant ID Type Subtype PubMed ID
dgv6093n100 CNV loss 25217958
esv2763946 CNV loss 21179565
nsv1028896 CNV gain 25217958
nsv517329 CNV gain+loss 19592680
nsv5397 CNV deletion 18451855
nsv604164 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for TSG1 Gene

Disorders for TSG1 Gene

Additional Disease Information for TSG1

No disorders were found for TSG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSG1 Gene

Publications for TSG1 Gene

  1. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q … O'Donnell CJ (BMC medical genetics 2007) 44 58
  2. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan RS … Benjamin EJ (BMC medical genetics 2007) 44 58
  3. Characterization of frequently deleted 6q locus in prostate cancer. (PMID: 17132090) Sun M … Srivastava S (DNA and cell biology 2006) 3 58

Products for TSG1 Gene

Sources for TSG1 Gene

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