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Aliases for TSG1 Gene

Subcategory (RNA class) for TSG1 Gene

lncRNA

Quality Score for this RNA gene is

1

Aliases for TSG1 Gene

  • Tumor Suppressor TSG1 3
  • TSG11 6

External Ids for TSG1 Gene

ORGUL Members for TSG1 Gene

Previous GeneCards Identifiers for TSG1 Gene

  • GC06U900867
  • GC06P094416

Summaries for TSG1 Gene

GeneCards Summary for TSG1 Gene

TSG1 (Tumor Suppressor TSG1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSG1 Gene

Genomics for TSG1 Gene

Regulatory Elements for TSG1 Gene

Genomic Location for TSG1 Gene

Start:
93,707,083 bp from pter
End:
93,776,481 bp from pter
Size:
69,399 bases
Orientation:
Plus strand

Genomic View for TSG1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TSG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSG1 Gene

Proteins for TSG1 Gene

Post-translational modifications for TSG1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSG1 Gene

Domains for TSG1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TSG1 Gene

Function for TSG1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TSG1 Gene

Localization for TSG1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TSG1 Gene

Pathways for TSG1 Gene

SuperPathways for TSG1 Gene

No Data Available

Interacting Proteins for TSG1 Gene

Gene Ontology (GO) - Biological Process for TSG1 Gene

None

No data available for Pathways by source for TSG1 Gene

Transcripts for TSG1 Gene

mRNA/cDNA for TSG1 Gene

(9) Additional mRNA sequences :

Unigene Clusters for TSG1 Gene

Tumor suppressor TSG1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TSG1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for TSG1
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TSG1 Gene

No ASD Table

Relevant External Links for TSG1 Gene

GeneLoc Exon Structure for
TSG1

Expression for TSG1 Gene

mRNA expression in normal human tissues for TSG1 Gene

mRNA expression in normal human tissues for TSG1 Gene

SOURCE GeneReport for Unigene cluster for TSG1 Gene Hs.509936

genes like me logo Genes that share expressions with TSG1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for TSG1 Gene

Orthologs for TSG1 Gene

No data available for Orthologs and Evolution for TSG1 Gene

Paralogs for TSG1 Gene

No data available for Paralogs for TSG1 Gene

Variants for TSG1 Gene

Sequence variations from dbSNP and Humsavar for TSG1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs1336072 -- 93,757,851(-) GAGTA(C/T)ATGTT intron-variant
rs1336073 -- 93,752,447(+) TGATC(A/C)ACCTG intron-variant
rs1336074 -- 93,754,903(+) tgtaa(A/G)agaat intron-variant
rs1336075 -- 93,755,444(+) CATGT(C/T)GAGGT intron-variant
rs1336076 -- 93,740,147(+) GAGTT(C/G)TACTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TSG1 Gene

Variant ID Type Subtype PubMed ID
nsv517329 CNV Gain+Loss 19592680
nsv886368 CNV Loss 21882294
nsv886369 CNV Loss 21882294
nsv5397 CNV Loss 18451855
nsv886370 CNV Loss 21882294

Relevant External Links for TSG1 Gene

HapMap Linkage Disequilibrium report
TSG1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TSG1 Gene

Disorders for TSG1 Gene

Relevant External Links for TSG1

Genetic Association Database (GAD)
TSG1
genes like me logo Genes that share disorders with TSG1: view

No data available for UniProtKB/Swiss-Prot for TSG1 Gene

Publications for TSG1 Gene

  1. Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study. (PMID: 17903301) Vasan R.S. … Benjamin E.J. (BMC Med. Genet. 2007) 48
  2. Genome-wide association and linkage analyses of hemostatic factors and hematological phenotypes in the Framingham Heart Study. (PMID: 17903294) Yang Q. … O'Donnell C.J. (BMC Med. Genet. 2007) 48
  3. Characterization of frequently deleted 6q locus in prostate cancer. (PMID: 17132090) Sun M. … Srivastava S. (DNA Cell Biol. 2006) 3

Products for TSG1 Gene

Sources for TSG1 Gene

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