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Aliases for TSC22D1-AS1 Gene

Subcategory (RNA class) for TSC22D1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TSC22D1-AS1 Gene

  • TSC22D1 Antisense RNA 1 2 3 5
  • TSC22D1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TSC22D1-AS1 Gene

Previous GeneCards Identifiers for TSC22D1-AS1 Gene

  • GC13P045151

Summaries for TSC22D1-AS1 Gene

GeneCards Summary for TSC22D1-AS1 Gene

TSC22D1-AS1 (TSC22D1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TSC22D1-AS1 Gene

Genomics for TSC22D1-AS1 Gene

Regulatory Elements for TSC22D1-AS1 Gene

Enhancers for TSC22D1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F044571 1.1 ENCODE 0.8 0.0 -17 7.9 HDGF CREB3L1 ZFP64 SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF207 FOS SMARCE1P5 TSC22D1-AS1 ENSG00000225727
GH13F044566 0.5 Ensembl 0.4 -8.8 -8793 0.6 SOX13 PKNOX1 EGR2 TSC22D1-AS1 ENSG00000225727
GH13F044564 0.5 ENCODE 0.4 -10.8 -10759 1.4 NR2F1 HLF ZNF600 PRDM1 TSC22D1-AS1 ENSG00000225727
GH13F044522 1 Ensembl ENCODE 0.2 -52.7 -52667 2.1 TBP SAP130 TEAD1 CEBPB MAFG EP300 ZNF316 MAFF NFE2L1 FOS TSC22D1 TSC22D1-AS1 ENSG00000225727
GH13F044570 0.4 Ensembl 0.4 -5.6 -5593 0.2 PRDM10 ZBTB33 TSC22D1-AS1 ENSG00000225727
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TSC22D1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TSC22D1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000666648 1207 3401 HDGF CREB3L1 SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF207 FOS KLF13

Genomic Location for TSC22D1-AS1 Gene

Chromosome:
13
Start:
44,575,893 bp from pter
End:
44,580,432 bp from pter
Size:
4,540 bases
Orientation:
Plus strand

Genomic View for TSC22D1-AS1 Gene

Genes around TSC22D1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TSC22D1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TSC22D1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TSC22D1-AS1 Gene

Proteins for TSC22D1-AS1 Gene

Post-translational modifications for TSC22D1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TSC22D1-AS1 Gene

Domains & Families for TSC22D1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TSC22D1-AS1 Gene

Function for TSC22D1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TSC22D1-AS1 Gene

Localization for TSC22D1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TSC22D1-AS1 Gene

Pathways & Interactions for TSC22D1-AS1 Gene

SuperPathways for TSC22D1-AS1 Gene

No Data Available

Interacting Proteins for TSC22D1-AS1 Gene

Gene Ontology (GO) - Biological Process for TSC22D1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TSC22D1-AS1 Gene

Transcripts for TSC22D1-AS1 Gene

mRNA/cDNA for TSC22D1-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TSC22D1-AS1 Gene

TSC22D1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TSC22D1-AS1 Gene

No ASD Table

Relevant External Links for TSC22D1-AS1 Gene

GeneLoc Exon Structure for
TSC22D1-AS1
ECgene alternative splicing isoforms for
TSC22D1-AS1

Expression for TSC22D1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TSC22D1-AS1 Gene

mRNA expression in normal human tissues for TSC22D1-AS1 Gene

SOURCE GeneReport for Unigene cluster for TSC22D1-AS1 Gene:

Hs.624196
genes like me logo Genes that share expression patterns with TSC22D1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TSC22D1-AS1 Gene

Orthologs for TSC22D1-AS1 Gene

Evolution for TSC22D1-AS1 Gene

ENSEMBL:
Gene Tree for TSC22D1-AS1 (if available)
TreeFam:
Gene Tree for TSC22D1-AS1 (if available)

No data available for Orthologs for TSC22D1-AS1 Gene

Paralogs for TSC22D1-AS1 Gene

No data available for Paralogs for TSC22D1-AS1 Gene

Variants for TSC22D1-AS1 Gene

Sequence variations from dbSNP and Humsavar for TSC22D1-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs111467657 -- 44,576,982(+) CGGAG(C/G)GCGGC intron-variant, upstream-variant-2KB
rs111570577 -- 44,576,150(+) ACGCC(A/G)GAGAG nc-transcript-variant, utr-variant-5-prime
rs111945998 -- 44,576,462(+) CGCCT(C/T)AGCCC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs112292195 -- 44,577,348(+) GCGCG(A/G)AGCGC intron-variant, upstream-variant-2KB
rs112438997 -- 44,574,576(+) GCTGC(C/T)GCTGC nc-transcript-variant, upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for TSC22D1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1124673 CNV duplication 24896259

Relevant External Links for TSC22D1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TSC22D1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TSC22D1-AS1 Gene

Disorders for TSC22D1-AS1 Gene

Relevant External Links for TSC22D1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TSC22D1-AS1

No disorders were found for TSC22D1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TSC22D1-AS1 Gene

Publications for TSC22D1-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TSC22D1-AS1 Gene

Sources for TSC22D1-AS1 Gene

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