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Aliases for TRX-CAT1-8 Gene

Subcategory (RNA class) for TRX-CAT1-8 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRX-CAT1-8 Gene

  • Transfer RNA-IMet (CAT) 1-8 2 3
  • Transfer RNA Initiator Methionine (CAT) 1-2 2 3
  • Transfer RNA Methionine 14 (Anticodon CAU) 2 3
  • Transfer RNA-IMet (CAT) 1-2 2 3
  • TRNA-IMet-CAT-1-2 3
  • TRX-CAT1-2 3
  • TRNAM14 3

External Ids for TRX-CAT1-8 Gene

Previous HGNC Symbols for TRX-CAT1-8 Gene

  • TRNAM14
  • TRX-CAT1-2

Previous GeneCards Identifiers for TRX-CAT1-8 Gene

  • GC06M027922
  • GC06M027943
  • GC17M082497
  • GC17M082499

Summaries for TRX-CAT1-8 Gene

GeneCards Summary for TRX-CAT1-8 Gene

TRX-CAT1-8 (Transfer RNA-IMet (CAT) 1-8) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRX-CAT1-8 Gene

Genomics for TRX-CAT1-8 Gene

Regulatory Elements for TRX-CAT1-8 Gene

Enhancers for TRX-CAT1-8 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F082492 1.9 FANTOM5 Ensembl ENCODE 0.8 -1.2 -1213 7.0 CREB3L1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF416 ZNF143 ZNF263 SP3 NARF ARL2BPP9 ALYREF ENSG00000262049 OGFOD3 ENSG00000262652 HGS LOC105371942 NARF-IT1 SECTM1
GH17F082517 1.3 Ensembl ENCODE 0.3 -22.7 -22712 0.6 ATF1 MLX ARID4B DMAP1 ZNF48 SLC30A9 GLIS2 SP5 NFYC MIER2 FOXK2 TRX-CAT1-8
GH17F082506 0.8 ENCODE 0.4 -12.0 -11965 1.0 HDGF TBP PKNOX1 BMI1 ZNF121 ZNF143 ZNF207 ETV6 CREM EGR2 C17orf62 TEX19 CSNK1D FOXK2 TRX-CAT1-8
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRX-CAT1-8 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRX-CAT1-8 Gene

Chromosome:
17
Start:
82,494,721 bp from pter
End:
82,494,792 bp from pter
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRX-CAT1-8 Gene

Genes around TRX-CAT1-8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRX-CAT1-8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRX-CAT1-8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRX-CAT1-8 Gene

Proteins for TRX-CAT1-8 Gene

Post-translational modifications for TRX-CAT1-8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRX-CAT1-8 Gene

Domains & Families for TRX-CAT1-8 Gene

Gene Families for TRX-CAT1-8 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRX-CAT1-8: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRX-CAT1-8 Gene

Function for TRX-CAT1-8 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRX-CAT1-8 Gene

Localization for TRX-CAT1-8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRX-CAT1-8 Gene

Pathways & Interactions for TRX-CAT1-8 Gene

SuperPathways for TRX-CAT1-8 Gene

No Data Available

Interacting Proteins for TRX-CAT1-8 Gene

Gene Ontology (GO) - Biological Process for TRX-CAT1-8 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRX-CAT1-8 Gene

Transcripts for TRX-CAT1-8 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRX-CAT1-8 Gene

No ASD Table

Relevant External Links for TRX-CAT1-8 Gene

GeneLoc Exon Structure for
TRX-CAT1-8
ECgene alternative splicing isoforms for
TRX-CAT1-8

No data available for mRNA/cDNA for TRX-CAT1-8 Gene

Expression for TRX-CAT1-8 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRX-CAT1-8 Gene

Orthologs for TRX-CAT1-8 Gene

No data available for Orthologs and Evolution for TRX-CAT1-8 Gene

Paralogs for TRX-CAT1-8 Gene

No data available for Paralogs for TRX-CAT1-8 Gene

Variants for TRX-CAT1-8 Gene

Relevant External Links for TRX-CAT1-8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRX-CAT1-8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRX-CAT1-8 Gene

Disorders for TRX-CAT1-8 Gene

No disorders were found for TRX-CAT1-8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRX-CAT1-8 Gene

Publications for TRX-CAT1-8 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRX-CAT1-8 Gene

Sources for TRX-CAT1-8 Gene

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