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Aliases for TRX-CAT1-1 Gene

Subcategory (RNA class) for TRX-CAT1-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRX-CAT1-1 Gene

  • Transfer RNA-IMet (CAT) 1-1 2 3
  • Transfer RNA Initiator Methionine (CAT) 1-1 2 3
  • Transfer RNA Methionine 3 (Anticodon CAU) 2 3
  • TRNA-IMet-CAT-1-1 3
  • TRNAM3 3

External Ids for TRX-CAT1-1 Gene

Previous HGNC Symbols for TRX-CAT1-1 Gene

  • TRNAM3

Summaries for TRX-CAT1-1 Gene

GeneCards Summary for TRX-CAT1-1 Gene

TRX-CAT1-1 (Transfer RNA-IMet (CAT) 1-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRX-CAT1-1 Gene

Genomics for TRX-CAT1-1 Gene

Regulatory Elements for TRX-CAT1-1 Gene

Enhancers for TRX-CAT1-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G153669 1.1 ENCODE 0.7 -0.2 -197 3.0 PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207 S100A1 CHTOP ENSG00000272030 SLC27A3 PIR58220 TRX-CAT1-1 ILF2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRX-CAT1-1 on UCSC Golden Path with GeneCards custom track

Promoters for TRX-CAT1-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000013827 50 2600 PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF207

Genomic Location for TRX-CAT1-1 Gene

Chromosome:
1
Start:
153,671,250 bp from pter
End:
153,671,321 bp from pter
Size:
72 bases
Orientation:
Plus strand

Genomic View for TRX-CAT1-1 Gene

Genes around TRX-CAT1-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRX-CAT1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRX-CAT1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRX-CAT1-1 Gene

Proteins for TRX-CAT1-1 Gene

Post-translational modifications for TRX-CAT1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRX-CAT1-1 Gene

Domains & Families for TRX-CAT1-1 Gene

Gene Families for TRX-CAT1-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRX-CAT1-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRX-CAT1-1 Gene

Function for TRX-CAT1-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRX-CAT1-1 Gene

Localization for TRX-CAT1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRX-CAT1-1 Gene

Pathways & Interactions for TRX-CAT1-1 Gene

SuperPathways for TRX-CAT1-1 Gene

No Data Available

Interacting Proteins for TRX-CAT1-1 Gene

Gene Ontology (GO) - Biological Process for TRX-CAT1-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRX-CAT1-1 Gene

Drugs & Compounds for TRX-CAT1-1 Gene

No Compound Related Data Available

Transcripts for TRX-CAT1-1 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRX-CAT1-1 Gene

No ASD Table

Relevant External Links for TRX-CAT1-1 Gene

GeneLoc Exon Structure for
TRX-CAT1-1
ECgene alternative splicing isoforms for
TRX-CAT1-1

No data available for mRNA/cDNA for TRX-CAT1-1 Gene

Expression for TRX-CAT1-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRX-CAT1-1 Gene

Orthologs for TRX-CAT1-1 Gene

No data available for Orthologs and Evolution for TRX-CAT1-1 Gene

Paralogs for TRX-CAT1-1 Gene

No data available for Paralogs for TRX-CAT1-1 Gene

Variants for TRX-CAT1-1 Gene

Relevant External Links for TRX-CAT1-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRX-CAT1-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRX-CAT1-1 Gene

Disorders for TRX-CAT1-1 Gene

No disorders were found for TRX-CAT1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRX-CAT1-1 Gene

Publications for TRX-CAT1-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRX-CAT1-1 Gene

Sources for TRX-CAT1-1 Gene

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