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Aliases for TRV-CAC8-1 Gene

Subcategory (RNA class) for TRV-CAC8-1 Gene

tRNA

Quality Score for this RNA gene is

4

Aliases for TRV-CAC8-1 Gene

  • Transfer RNA-Val (CAC) 8-1 2 3
  • Transfer RNA Valine 16 (Anticodon CAC) 2 3
  • TRNA-Val-CAC-8-1 3
  • TRNAV16 3

External Ids for TRV-CAC8-1 Gene

ORGUL Members for TRV-CAC8-1 Gene

Previous HGNC Symbols for TRV-CAC8-1 Gene

  • TRNAV16

Summaries for TRV-CAC8-1 Gene

GeneCards Summary for TRV-CAC8-1 Gene

TRV-CAC8-1 (Transfer RNA-Val (CAC) 8-1) is an RNA Gene, and is affiliated with the tRNA class.

fRNAdb sequence ontologies for TRV-CAC8-1 Gene

  • tRNA: Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position.

View fRNAdb secondary structures for TRV-CAC8-1

Additional gene information for TRV-CAC8-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRV-CAC8-1 Gene

Genomics for TRV-CAC8-1 Gene

Regulatory Elements for TRV-CAC8-1 Gene

Enhancers for TRV-CAC8-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H143798 1.3 Ensembl ENCODE 0.7 +0.5 500 1 ARNT SIN3A FEZF1 ZNF2 SLC30A9 ZNF766 ZNF302 ZNF143 ZNF207 FOS LOC645166 TRV-CAC8-1 PIR38563
GH01H143796 0.9 ENCODE 0.7 +3.4 3431 0 HDAC1 PKNOX1 ATF1 ARNT TCF12 EGR1 ZNF350 ATF7 EGR2 ZNF362 PIR38563 TRV-CAC8-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRV-CAC8-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRV-CAC8-1 Gene

Chromosome:
1
Start:
143,800,041 bp from pter
End:
143,800,111 bp from pter
Size:
71 bases
Orientation:
Minus strand

Genomic View for TRV-CAC8-1 Gene

Genes around TRV-CAC8-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRV-CAC8-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRV-CAC8-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRV-CAC8-1 Gene

ORGUL Member Location for TRV-CAC8-1 Gene

ORGUL Member Location for TRV-CAC8-1 gene

Proteins for TRV-CAC8-1 Gene

Post-translational modifications for TRV-CAC8-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRV-CAC8-1 Gene

Domains & Families for TRV-CAC8-1 Gene

Gene Families for TRV-CAC8-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRV-CAC8-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRV-CAC8-1 Gene

Function for TRV-CAC8-1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRV-CAC8-1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRV-CAC8-1 Gene

Localization for TRV-CAC8-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRV-CAC8-1 Gene

Pathways & Interactions for TRV-CAC8-1 Gene

SuperPathways for TRV-CAC8-1 Gene

No Data Available

Interacting Proteins for TRV-CAC8-1 Gene

Gene Ontology (GO) - Biological Process for TRV-CAC8-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRV-CAC8-1 Gene

Drugs & Compounds for TRV-CAC8-1 Gene

No Compound Related Data Available

Transcripts for TRV-CAC8-1 Gene

fRNAdb Secondary structures for TRV-CAC8-1 Gene

  • RF00005;tRNA;AL356957.27/185738-185668

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRV-CAC8-1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TRV-CAC8-1 Gene

No ASD Table

Relevant External Links for TRV-CAC8-1 Gene

GeneLoc Exon Structure for
TRV-CAC8-1
ECgene alternative splicing isoforms for
TRV-CAC8-1

No data available for mRNA/cDNA for TRV-CAC8-1 Gene

Expression for TRV-CAC8-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRV-CAC8-1 Gene

Orthologs for TRV-CAC8-1 Gene

No data available for Orthologs and Evolution for TRV-CAC8-1 Gene

Paralogs for TRV-CAC8-1 Gene

No data available for Paralogs for TRV-CAC8-1 Gene

Variants for TRV-CAC8-1 Gene

Relevant External Links for TRV-CAC8-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRV-CAC8-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRV-CAC8-1 Gene

Disorders for TRV-CAC8-1 Gene

No disorders were found for TRV-CAC8-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRV-CAC8-1 Gene

Publications for TRV-CAC8-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 60
  2. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. (PMID: 9023104) Lowe TM … Eddy SR (Nucleic acids research 1997) 1
  3. The tertiary structure of tRNA and the development of the genetic code. (PMID: 8256282) Hou YM (Trends in biochemical sciences 1993) 1

Products for TRV-CAC8-1 Gene

Sources for TRV-CAC8-1 Gene

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