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Aliases for TRV-CAC8-1 Gene

Subcategory (RNA class) for TRV-CAC8-1 Gene

tRNA

Quality Score for this RNA gene is

4

Aliases for TRV-CAC8-1 Gene

  • Transfer RNA-Val (CAC) 8-1 2 3
  • Transfer RNA Valine 16 (Anticodon CAC) 2 3
  • TRNA-Val-CAC-8-1 3
  • TRNAV16 3

External Ids for TRV-CAC8-1 Gene

ORGUL Members for TRV-CAC8-1 Gene

Previous HGNC Symbols for TRV-CAC8-1 Gene

  • TRNAV16

Summaries for TRV-CAC8-1 Gene

GeneCards Summary for TRV-CAC8-1 Gene

TRV-CAC8-1 (Transfer RNA-Val (CAC) 8-1) is an RNA Gene, and is affiliated with the tRNA class.

fRNAdb sequence ontologies for TRV-CAC8-1 Gene

  • tRNA: Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position.

View fRNAdb secondary structures for TRV-CAC8-1

Additional gene information for TRV-CAC8-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRV-CAC8-1 Gene

Genomics for TRV-CAC8-1 Gene

GeneHancer (GH) Regulatory Elements for TRV-CAC8-1 Gene

Promoters and enhancers for TRV-CAC8-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I143798 Enhancer 1.2 Ensembl ENCODE 550.8 +0.5 500 1.6 ARNT SIN3A FEZF1 ZNF2 SLC30A9 ZNF766 ZNF213 ZNF302 E2F8 ZNF207 TRV-CAC8-1 LOC645166 PIR38563
GH01I143796 Enhancer 0.8 ENCODE 0.8 +3.4 3430 0.2 HDAC1 PKNOX1 ATF1 ARNT TCF12 EGR1 ZNF350 ATF7 EGR2 ZNF362 PIR38563 TRV-CAC8-1 LOC388692
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRV-CAC8-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRV-CAC8-1 Gene

Genomic Locations for TRV-CAC8-1 Gene
chr1:143,800,041-143,800,111
(GRCh38/hg38)
Size:
71 bases
Orientation:
Minus strand
chr1:149,294,666-149,294,736
(GRCh37/hg19)

Genomic View for TRV-CAC8-1 Gene

Genes around TRV-CAC8-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRV-CAC8-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRV-CAC8-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRV-CAC8-1 Gene

ORGUL Member Location for TRV-CAC8-1 Gene

ORGUL Member Location for TRV-CAC8-1 gene

Proteins for TRV-CAC8-1 Gene

Post-translational modifications for TRV-CAC8-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRV-CAC8-1 Gene

Domains & Families for TRV-CAC8-1 Gene

Gene Families for TRV-CAC8-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRV-CAC8-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRV-CAC8-1 Gene

Function for TRV-CAC8-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRV-CAC8-1 Gene

Localization for TRV-CAC8-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRV-CAC8-1 Gene

Pathways & Interactions for TRV-CAC8-1 Gene

SuperPathways for TRV-CAC8-1 Gene

No Data Available

Interacting Proteins for TRV-CAC8-1 Gene

Gene Ontology (GO) - Biological Process for TRV-CAC8-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRV-CAC8-1 Gene

Drugs & Compounds for TRV-CAC8-1 Gene

No Compound Related Data Available

Transcripts for TRV-CAC8-1 Gene

fRNAdb Secondary structures for TRV-CAC8-1 Gene

  • RF00005;tRNA;AL356957.27/185738-185668

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRV-CAC8-1 Gene

No ASD Table

Relevant External Links for TRV-CAC8-1 Gene

GeneLoc Exon Structure for
TRV-CAC8-1
ECgene alternative splicing isoforms for
TRV-CAC8-1

No data available for mRNA/cDNA for TRV-CAC8-1 Gene

Expression for TRV-CAC8-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRV-CAC8-1 Gene

Orthologs for TRV-CAC8-1 Gene

No data available for Orthologs and Evolution for TRV-CAC8-1 Gene

Paralogs for TRV-CAC8-1 Gene

No data available for Paralogs for TRV-CAC8-1 Gene

Variants for TRV-CAC8-1 Gene

Additional Variant Information for TRV-CAC8-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRV-CAC8-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRV-CAC8-1 Gene

Disorders for TRV-CAC8-1 Gene

No disorders were found for TRV-CAC8-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRV-CAC8-1 Gene

Publications for TRV-CAC8-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58
  2. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. (PMID: 9023104) Lowe TM … Eddy SR (Nucleic acids research 1997) 1
  3. The tertiary structure of tRNA and the development of the genetic code. (PMID: 8256282) Hou YM (Trends in biochemical sciences 1993) 1

Products for TRV-CAC8-1 Gene

Sources for TRV-CAC8-1 Gene

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