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Aliases for TRV-CAC6-1 Gene

Subcategory (RNA class) for TRV-CAC6-1 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRV-CAC6-1 Gene

  • Transfer RNA-Val (CAC) 6-1 2 3
  • Transfer RNA Valine 28 (Anticodon CAC) 2 3
  • TRNA-Val-CAC-6-1 3
  • TRNAV28 3

External Ids for TRV-CAC6-1 Gene

ORGUL Members for TRV-CAC6-1 Gene

Previous HGNC Symbols for TRV-CAC6-1 Gene

  • TRNAV28

Summaries for TRV-CAC6-1 Gene

GeneCards Summary for TRV-CAC6-1 Gene

TRV-CAC6-1 (Transfer RNA-Val (CAC) 6-1) is an RNA Gene, and is affiliated with the tRNA class.

Additional gene information for TRV-CAC6-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRV-CAC6-1 Gene

Genomics for TRV-CAC6-1 Gene

Regulatory Elements for TRV-CAC6-1 Gene

Enhancers for TRV-CAC6-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H027205 1 Ensembl ENCODE 0.7 +0.2 178 1 HDAC1 HDGF TBP MAX GTF3C2 POLR3A ADNP ZSCAN29 RUNX3 CREM ABT1 ZKSCAN8 BTN2A3P POM121L2 ZNF391 BTN3A1 BTN3A2 ZNF602P GC06M027207 TRV-CAC6-1
GH06H027187 1.6 FANTOM5 Ensembl ENCODE 0.4 +17.7 17686 2 HDGF PKNOX1 ATF1 ARNT SIN3A ZNF2 YY1 TCF12 ELK1 ZNF143 ABT1 HMGN4 BTN2A3P BTN2A1 BTN2A2 HIST1H2AH BTN3A2 LOC102724851 TRI-AAT5-2 TRV-CAC6-1
GH06H027176 1.7 FANTOM5 Ensembl ENCODE 0.3 +28.5 28548 3 HDGF PKNOX1 ARNT SIN3A ZNF2 YY1 ZNF143 FOS SP3 SP5 ZKSCAN8 ABT1 BTN3A2 BTN2A2 BTN2A1 ZNF204P BTN2A3P HMGN4 ZNF391 HIST1H2BK
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRV-CAC6-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRV-CAC6-1 Gene

Chromosome:
6
Start:
27,206,088 bp from pter
End:
27,206,160 bp from pter
Size:
73 bases
Orientation:
Minus strand

Genomic View for TRV-CAC6-1 Gene

Genes around TRV-CAC6-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRV-CAC6-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRV-CAC6-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRV-CAC6-1 Gene

Proteins for TRV-CAC6-1 Gene

Post-translational modifications for TRV-CAC6-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRV-CAC6-1 Gene

Domains & Families for TRV-CAC6-1 Gene

Gene Families for TRV-CAC6-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRV-CAC6-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRV-CAC6-1 Gene

Function for TRV-CAC6-1 Gene

Phenotypes From GWAS Catalog for TRV-CAC6-1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRV-CAC6-1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRV-CAC6-1 Gene

Localization for TRV-CAC6-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRV-CAC6-1 Gene

Pathways & Interactions for TRV-CAC6-1 Gene

SuperPathways for TRV-CAC6-1 Gene

No Data Available

Interacting Proteins for TRV-CAC6-1 Gene

Gene Ontology (GO) - Biological Process for TRV-CAC6-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRV-CAC6-1 Gene

Drugs & Compounds for TRV-CAC6-1 Gene

No Compound Related Data Available

Transcripts for TRV-CAC6-1 Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRV-CAC6-1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TRV-CAC6-1 Gene

No ASD Table

Relevant External Links for TRV-CAC6-1 Gene

GeneLoc Exon Structure for
TRV-CAC6-1
ECgene alternative splicing isoforms for
TRV-CAC6-1

No data available for mRNA/cDNA for TRV-CAC6-1 Gene

Expression for TRV-CAC6-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRV-CAC6-1 Gene

Orthologs for TRV-CAC6-1 Gene

No data available for Orthologs and Evolution for TRV-CAC6-1 Gene

Paralogs for TRV-CAC6-1 Gene

No data available for Paralogs for TRV-CAC6-1 Gene

Variants for TRV-CAC6-1 Gene

Relevant External Links for TRV-CAC6-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRV-CAC6-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRV-CAC6-1 Gene

Disorders for TRV-CAC6-1 Gene

No disorders were found for TRV-CAC6-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRV-CAC6-1 Gene

Publications for TRV-CAC6-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 60

Products for TRV-CAC6-1 Gene

Sources for TRV-CAC6-1 Gene

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