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TRV-CAC3-1 Gene(RNA Gene)

Transfer RNA-Val (CAC) 3-1

GCID:
GC19M004734
GIFtS:
8
Genes Participants
UDN Logo

Aliases for TRV-CAC3-1 Gene

Subcategory (RNA class) for TRV-CAC3-1 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRV-CAC3-1 Gene

  • Transfer RNA-Val (CAC) 3-1 2 3
  • Transfer RNA Valine 32 (Anticodon CAC) 2 3
  • TRNA-Val-CAC-3-1 3
  • TRNAV32 3

External Ids for TRV-CAC3-1 Gene

ORGUL Members for TRV-CAC3-1 Gene

Previous HGNC Symbols for TRV-CAC3-1 Gene

  • TRNAV32

Previous GeneCards Identifiers for TRV-CAC3-1 Gene

  • GC19M004730
  • GC19M004732

Summaries for TRV-CAC3-1 Gene

GeneCards Summary for TRV-CAC3-1 Gene

TRV-CAC3-1 (Transfer RNA-Val (CAC) 3-1) is an RNA Gene, and is affiliated with the tRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRV-CAC3-1 Gene

Genomics for TRV-CAC3-1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for TRV-CAC3-1 Gene

Enhancers for TRV-CAC3-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G004732 1.1 Ensembl ENCODE 0.4 -8.1 -8128 0.3 ARID4B KLF17 ZNF2 RAD21 ZEB1 ZNF335 EGR1 ZNF143 THAP11 EGR2 GC19M004737 TRV-CAC3-1 MIR7-3HG
GH19G004726 0.6 ENCODE 0.7 -2.2 -2217 0.2 BCOR ZFP64 ZBTB11 ZNF426 ZNF394 ZNF781 ZNF518A ZNF697 POLR2H ZNF34 SNRPEP4 GC19M004737 TRV-CAC3-1 MIR7-3HG
GH19G004759 1.3 Ensembl ENCODE 0.3 -35.1 -35123 1.1 HDGF ARID4B DMAP1 ZNF48 ZNF143 FOS ZNF263 SP5 NFYC MXD4 MIR7-3HG ENSG00000268536 TRV-CAC3-1 GC19M004737
GH19G004730 0.9 ENCODE 0.4 -6.2 -6187 0.1 HDGF HDAC1 CBX3 PTBP1 ARNT ZNF2 RAD21 ZEB1 GLIS2 ZNF143 GC19M004737 TRV-CAC3-1 MIR7-3HG
GH19G004727 0.5 ENCODE 0.7 -1.9 -1917 0.2 POLR2H BCOR ZBTB11 ZNF394 GC19M004737 TRV-CAC3-1 MIR7-3HG
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRV-CAC3-1 on UCSC Golden Path with GeneCards custom track

Promoters for TRV-CAC3-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000106265 707 2401 CREB3L1 MLX AGO1 DMAP1 YY1 ZNF143 ZNF548 SP3 NFYC TBX21

Genomic Location for TRV-CAC3-1 Gene

Chromosome:
19
Start:
4,724,635 bp from pter
End:
4,724,707 bp from pter
Size:
73 bases
Orientation:
Minus strand

Genomic View for TRV-CAC3-1 Gene

Genes around TRV-CAC3-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRV-CAC3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRV-CAC3-1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRV-CAC3-1 Gene

Proteins for TRV-CAC3-1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRV-CAC3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRV-CAC3-1 Gene

Domains & Families for TRV-CAC3-1 Gene

Gene Families for TRV-CAC3-1 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRV-CAC3-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRV-CAC3-1 Gene

Function for TRV-CAC3-1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRV-CAC3-1 Gene

Localization for TRV-CAC3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRV-CAC3-1 Gene

Pathways & Interactions for TRV-CAC3-1 Gene

SuperPathways for TRV-CAC3-1 Gene

PathCards logo More details on SuperPathways for TRV-CAC3-1
No Data Available

Interacting Proteins for TRV-CAC3-1 Gene

Gene Ontology (GO) - Biological Process for TRV-CAC3-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRV-CAC3-1 Gene

Drugs & Compounds for TRV-CAC3-1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRV-CAC3-1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRV-CAC3-1 Gene

No ASD Table

Relevant External Links for TRV-CAC3-1 Gene

GeneLoc Exon Structure for
TRV-CAC3-1
ECgene alternative splicing isoforms for
TRV-CAC3-1

No data available for mRNA/cDNA for TRV-CAC3-1 Gene

Expression for TRV-CAC3-1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRV-CAC3-1 Gene

Orthologs for TRV-CAC3-1 Gene

No data available for Orthologs and Evolution for TRV-CAC3-1 Gene

Paralogs for TRV-CAC3-1 Gene

No data available for Paralogs for TRV-CAC3-1 Gene

Variants for TRV-CAC3-1 Gene

Relevant External Links for TRV-CAC3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRV-CAC3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRV-CAC3-1 Gene

Disorders for TRV-CAC3-1 Gene

No disorders were found for TRV-CAC3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRV-CAC3-1 Gene

Publications for TRV-CAC3-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64
  2. Identity determinants of human tRNA(Ser): sequence elements necessary for serylation and maturation of a tRNA with a long extra arm. (PMID: 8344269) Achsel T. … Gross H.J. (EMBO J. 1993) 3 64
  3. The first human genes for tRNA(ArgICG), tRNA(GlyUCC), and tRNA(ThrIGU) and more tRNA(Val) pseudogenes: expression and pre-tRNA maturation in HeLa cell-free extracts. (PMID: 1457046) KaAsar Y. … Gross H.J. (DNA Cell Biol. 1992) 3 64
  4. Genes, variant genes and pseudogenes of the human tRNA(Val) gene family. Expression and pre-tRNA maturation in vitro. (PMID: 2585499) Thomann H.U. … Gross H.J. (J. Mol. Biol. 1989) 3 64

Products for TRV-CAC3-1 Gene

Sources for TRV-CAC3-1 Gene

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