Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TRUB1 Gene

Aliases for TRUB1 Gene

  • TruB Pseudouridine (Psi) Synthase Family Member 1 2 3
  • PUS4 3 4 6
  • TruB Pseudouridine (Psi) Synthase Homolog 1 (E. Coli) 2
  • TruB Pseudouridine (Psi) Synthase Homolog 1 3
  • Probable TRNA Pseudouridine Synthase 1 3
  • EC 5.4.99.- 4
  • EC 5.4.99 63

External Ids for TRUB1 Gene

Summaries for TRUB1 Gene

Entrez Gene Summary for TRUB1 Gene

  • Pseudouridine is an abundant component of rRNAs and tRNAs and is enzymatically generated by isomerization of uridine by pseudouridine synthase (Zucchini et al., 2003 [PubMed 12736709]).[supplied by OMIM, Mar 2008]

GeneCards Summary for TRUB1 Gene

TRUB1 (TruB Pseudouridine (Psi) Synthase Family Member 1) is a Protein Coding gene. GO annotations related to this gene include RNA binding and pseudouridine synthase activity. An important paralog of this gene is TRUB2.

UniProtKB/Swiss-Prot for TRUB1 Gene

  • May be responsible for synthesis of pseudouridine from uracil in transfer RNAs.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRUB1 Gene

Genomics for TRUB1 Gene

Genomic Location for TRUB1 Gene

Start:
114,938,193 bp from pter
End:
114,977,680 bp from pter
Size:
39,488 bases
Orientation:
Plus strand

Genomic View for TRUB1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRUB1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRUB1 Gene

Regulatory Elements for TRUB1 Gene

Proteins for TRUB1 Gene

  • Protein details for TRUB1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WWH5-TRUB1_HUMAN
    Recommended name:
    Probable tRNA pseudouridine synthase 1
    Protein Accession:
    Q8WWH5
    Secondary Accessions:
    • B2R716
    • Q53ES2

    Protein attributes for TRUB1 Gene

    Size:
    349 amino acids
    Molecular mass:
    37253 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRUB1 Gene

Proteomics data for TRUB1 Gene at MOPED

Selected DME Specific Peptides for TRUB1 Gene

Post-translational modifications for TRUB1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TRUB1 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains for TRUB1 Gene

Suggested Antigen Peptide Sequences for TRUB1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8WWH5

UniProtKB/Swiss-Prot:

TRUB1_HUMAN
Family:
  • Belongs to the pseudouridine synthase TruB family.:
    • Q8WWH5
genes like me logo Genes that share domains with TRUB1: view

No data available for Gene Families for TRUB1 Gene

Function for TRUB1 Gene

Molecular function for TRUB1 Gene

UniProtKB/Swiss-Prot CatalyticActivity: tRNA uridine = tRNA pseudouridine
UniProtKB/Swiss-Prot Function: May be responsible for synthesis of pseudouridine from uracil in transfer RNAs.

Enzyme Numbers (IUBMB) for TRUB1 Gene

Gene Ontology (GO) - Molecular Function for TRUB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IEA --
GO:0009982 pseudouridine synthase activity IEA --
genes like me logo Genes that share ontologies with TRUB1: view

miRNA for TRUB1 Gene

miRTarBase miRNAs that target TRUB1

No data available for Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for TRUB1 Gene

Localization for TRUB1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TRUB1 Gene COMPARTMENTS Subcellular localization image for TRUB1 gene
Compartment Confidence
nucleus 3
cytoskeleton 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TRUB1 Gene

Pathways for TRUB1 Gene

SuperPathways for TRUB1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRUB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001522 pseudouridine synthesis IEA --
GO:0006396 RNA processing IEA --
GO:0008033 tRNA processing IEA --
GO:0009451 RNA modification --
genes like me logo Genes that share ontologies with TRUB1: view

No data available for Pathways by source for TRUB1 Gene

Compounds for TRUB1 Gene

(1) HMDB Compounds for TRUB1 Gene

Compound Synonyms Cas Number PubMed IDs
Pseudouridine
  • 5-(b-D-Ribofuranosyl)uracil
1445-07-4
genes like me logo Genes that share compounds with TRUB1: view

Transcripts for TRUB1 Gene

mRNA/cDNA for TRUB1 Gene

Unigene Clusters for TRUB1 Gene

TruB pseudouridine (psi) synthase homolog 1 (E. coli):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TRUB1 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8
SP1: -
SP2: - -
SP3: - -
SP4:

Relevant External Links for TRUB1 Gene

GeneLoc Exon Structure for
TRUB1
ECgene alternative splicing isoforms for
TRUB1

Expression for TRUB1 Gene

mRNA expression in normal human tissues for TRUB1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TRUB1 Gene

SOURCE GeneReport for Unigene cluster for TRUB1 Gene Hs.21187

mRNA Expression by UniProt/SwissProt for TRUB1 Gene

Q8WWH5-TRUB1_HUMAN
Tissue specificity: Highly expressed in heart, skeletal muscle and liver. Expressed at lower levels in lung, small intestine, kidney and spleen.
genes like me logo Genes that share expressions with TRUB1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for TRUB1 Gene

Orthologs for TRUB1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for TRUB1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRUB1 35
  • 99.33 (n)
  • 99.14 (a)
TRUB1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TRUB1 35
  • 91.01 (n)
  • 92.67 (a)
TRUB1 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TRUB1 35
  • 91.76 (n)
  • 92.82 (a)
TRUB1 36
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Trub1 35
  • 81.15 (n)
  • 83.04 (a)
Trub1 16
Trub1 36
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TRUB1 36
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TRUB1 36
  • 74 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Trub1 35
  • 81.91 (n)
  • 84.07 (a)
chicken
(Gallus gallus)
Aves TRUB1 35
  • 76.54 (n)
  • 75.56 (a)
TRUB1 36
  • 70 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TRUB1 36
  • 69 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.15432 35
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.8216 35
trub1 35
  • 63.78 (n)
  • 66.92 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.1341 35
zebrafish
(Danio rerio)
Actinopterygii trub1 35
  • 64.25 (n)
  • 67.18 (a)
trub1 36
  • 61 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PUS4 36
  • 21 (a)
OneToMany
PUS4 38
Species with no ortholog for TRUB1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TRUB1 Gene

ENSEMBL:
Gene Tree for TRUB1 (if available)
TreeFam:
Gene Tree for TRUB1 (if available)

Paralogs for TRUB1 Gene

Paralogs for TRUB1 Gene

genes like me logo Genes that share paralogs with TRUB1: view

Variants for TRUB1 Gene

Sequence variations from dbSNP and Humsavar for TRUB1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs881191 -- 114,947,202(+) tctac(A/G)gaggc intron-variant
rs881192 -- 114,947,026(+) aatca(C/T)aatat intron-variant
rs881193 -- 114,948,125(-) GTTCT(A/G)TGCTC intron-variant
rs1045657 -- 114,977,226(+) TTAGA(A/T)TTTAA utr-variant-3-prime
rs1131811 -- 114,942,736(-) AGAAC(A/T)CCTCG reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for TRUB1 Gene

Variant ID Type Subtype PubMed ID
nsv7211 OTHER Inversion 18451855
nsv831996 CNV Gain 17160897
nsv831997 CNV Gain 17160897
esv2666688 CNV Deletion 23128226

Relevant External Links for TRUB1 Gene

HapMap Linkage Disequilibrium report
TRUB1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TRUB1 Gene

Disorders for TRUB1 Gene

(1) University of Copenhagen DISEASES for TRUB1 Gene

Relevant External Links for TRUB1

Genetic Association Database (GAD)
TRUB1
Human Genome Epidemiology (HuGE) Navigator
TRUB1
genes like me logo Genes that share disorders with TRUB1: view

No data available for UniProtKB/Swiss-Prot for TRUB1 Gene

Publications for TRUB1 Gene

  1. The human TruB family of pseudouridine synthase genes, including the Dyskeratosis Congenita 1 gene and the novel member TRUB1. (PMID: 12736709) Zucchini C. … Valvassori L. (Int. J. Mol. Med. 2003) 2 3 4 23
  2. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A. … Goate A. (Am. J. Hum. Genet. 2006) 3 48
  5. System-wide changes to SUMO modifications in response to heat shock. (PMID: 19471022) Golebiowski F. … Hay R.T. (Sci Signal 2009) 3

Products for TRUB1 Gene

Sources for TRUB1 Gene

Back to Top

Content