Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TRU-TCA2-1 Gene

Subcategory (RNA class) for TRU-TCA2-1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TRU-TCA2-1 Gene

  • Transfer RNA-SeC (TCA) 2-1 2 3
  • Transfer RNA Selenocysteine/Phosphoserine (Opal Suppressor) 2 2 3
  • Transfer RNA Selenocysteine 2 (Anticodon UCA) 2 3
  • Transfer RNA Selenocysteine/Phosphoserine (Opal Suppressor) Pseudogene 1 2
  • TRNA-SeC-TCA-2-1 3
  • TRNAU2 3
  • TRSPP1 3
  • TRSP2 3

External Ids for TRU-TCA2-1 Gene

Previous HGNC Symbols for TRU-TCA2-1 Gene

  • TRSPP1
  • TRNAU2

Summaries for TRU-TCA2-1 Gene

GeneCards Summary for TRU-TCA2-1 Gene

TRU-TCA2-1 (Transfer RNA-SeC (TCA) 2-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRU-TCA2-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRU-TCA2-1 Gene

Genomics for TRU-TCA2-1 Gene

Regulatory Elements for TRU-TCA2-1 Gene

Enhancers for TRU-TCA2-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22H044145 1.2 Ensembl ENCODE dbSUPER 0.7 -3.1 -3119 4.7 SUZ12 MAX MNT ETS1 ZNF664 ZFHX2 POLR2A MYNN CTBP2 POU5F1 ENSG00000220702 PARVG TRU-TCA2-1 ENSG00000280434
GH22H044154 1 ENCODE dbSUPER 0.7 +3.9 3941 0.2 ZNF493 ZSCAN4 INSM2 ZNF175 ZNF266 BMI1 ZNF514 ZFHX2 ZNF157 POLR2A PHF21B PARVG RPL35AP36 SAMM50 TRU-TCA2-1
GH22H044160 0.9 Ensembl ENCODE dbSUPER 0.4 +10.0 10044 0.6 POLR2A PARVG TRU-TCA2-1
GH22H044158 0.6 ENCODE dbSUPER 0.4 +7.9 7854 0.3 ZIC2 ENSG00000220702 TRU-TCA2-1 PARVG
GH22H044159 0.5 ENCODE dbSUPER 0.4 +8.7 8679 0.2 TRU-TCA2-1 PARVG
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRU-TCA2-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRU-TCA2-1 Gene

Genomic Locations for TRU-TCA2-1 Gene
86 bases
Plus strand

Genomic View for TRU-TCA2-1 Gene

Genes around TRU-TCA2-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRU-TCA2-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRU-TCA2-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TRU-TCA2-1 Gene

Proteins for TRU-TCA2-1 Gene

Post-translational modifications for TRU-TCA2-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRU-TCA2-1 Gene

Domains & Families for TRU-TCA2-1 Gene

Gene Families for TRU-TCA2-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRU-TCA2-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRU-TCA2-1 Gene

Function for TRU-TCA2-1 Gene

Phenotypes From GWAS Catalog for TRU-TCA2-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRU-TCA2-1 Gene

Localization for TRU-TCA2-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRU-TCA2-1 Gene

Pathways & Interactions for TRU-TCA2-1 Gene

SuperPathways for TRU-TCA2-1 Gene

No Data Available

Interacting Proteins for TRU-TCA2-1 Gene

Gene Ontology (GO) - Biological Process for TRU-TCA2-1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TRU-TCA2-1 Gene

Drugs & Compounds for TRU-TCA2-1 Gene

No Compound Related Data Available

Transcripts for TRU-TCA2-1 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRU-TCA2-1 Gene

No ASD Table

Relevant External Links for TRU-TCA2-1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

No data available for mRNA/cDNA for TRU-TCA2-1 Gene

Expression for TRU-TCA2-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRU-TCA2-1 Gene

Orthologs for TRU-TCA2-1 Gene

No data available for Orthologs and Evolution for TRU-TCA2-1 Gene

Paralogs for TRU-TCA2-1 Gene

No data available for Paralogs for TRU-TCA2-1 Gene

Variants for TRU-TCA2-1 Gene

Relevant External Links for TRU-TCA2-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRU-TCA2-1 Gene

Disorders for TRU-TCA2-1 Gene

No disorders were found for TRU-TCA2-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRU-TCA2-1 Gene

Publications for TRU-TCA2-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 60
  2. A human opal suppressor tRNA gene and pseudogene. (PMID: 3156131) O'Neill VA … Hatfield DL (The Journal of biological chemistry 1985) 3 60

Products for TRU-TCA2-1 Gene

Sources for TRU-TCA2-1 Gene

Loading form....