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Aliases for TRU-TCA2-1 Gene

Subcategory (RNA class) for TRU-TCA2-1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TRU-TCA2-1 Gene

  • Transfer RNA-SeC (TCA) 2-1 2 3
  • Transfer RNA Selenocysteine/Phosphoserine (Opal Suppressor) 2 2 3
  • Transfer RNA Selenocysteine 2 (Anticodon UCA) 2 3
  • Transfer RNA Selenocysteine/Phosphoserine (Opal Suppressor) Pseudogene 1 2
  • TRNA-SeC-TCA-2-1 3
  • TRNAU2 3
  • TRSPP1 3
  • TRSP2 3

External Ids for TRU-TCA2-1 Gene

Previous HGNC Symbols for TRU-TCA2-1 Gene

  • TRSPP1
  • TRNAU2

Summaries for TRU-TCA2-1 Gene

GeneCards Summary for TRU-TCA2-1 Gene

TRU-TCA2-1 (Transfer RNA-SeC (TCA) 2-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRU-TCA2-1 Gene

Genomics for TRU-TCA2-1 Gene

Regulatory Elements for TRU-TCA2-1 Gene

Enhancers for TRU-TCA2-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F044154 1.2 Ensembl ENCODE 0.8 +3.9 3944 0.4 TBL1XR1 ZNF493 INSM2 ZNF266 ZNF175 BMI1 CEBPG ZNF514 ZFHX2 ZNF157 RPL35AP36 SAMM50 TRU-TCA2-1 PARVG
GH22F044145 0.9 Ensembl ENCODE 0.8 -3.1 -3122 4.7 ESRRA SUZ12 TEAD4 ZMYM3 MAX ZIC2 ZNF664 ZFHX2 POLR2A EGR2 ENSG00000220702 PARVG TRU-TCA2-1 ENSG00000280434
GH22F044159 0.2 ENCODE 0.4 +8.7 8679 0.2 TRU-TCA2-1 PARVG
GH22F044158 0.7 ENCODE 0.4 +7.9 7854 0.3 ZIC2 ENSG00000220702 TRU-TCA2-1 PARVG
GH22F044143 0.5 ENCODE 0.4 -7.4 -7362 0.2 BHLHE40 ENSG00000220702 ENSG00000280434 TRU-TCA2-1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRU-TCA2-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRU-TCA2-1 Gene

44,150,657 bp from pter
44,150,742 bp from pter
86 bases
Plus strand

Genomic View for TRU-TCA2-1 Gene

Genes around TRU-TCA2-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRU-TCA2-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRU-TCA2-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TRU-TCA2-1 Gene

Proteins for TRU-TCA2-1 Gene

Post-translational modifications for TRU-TCA2-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRU-TCA2-1 Gene

Domains & Families for TRU-TCA2-1 Gene

Gene Families for TRU-TCA2-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRU-TCA2-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRU-TCA2-1 Gene

Function for TRU-TCA2-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRU-TCA2-1 Gene

Localization for TRU-TCA2-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRU-TCA2-1 Gene

Pathways & Interactions for TRU-TCA2-1 Gene

SuperPathways for TRU-TCA2-1 Gene

No Data Available

Interacting Proteins for TRU-TCA2-1 Gene

Gene Ontology (GO) - Biological Process for TRU-TCA2-1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TRU-TCA2-1 Gene

Transcripts for TRU-TCA2-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRU-TCA2-1 Gene

No ASD Table

Relevant External Links for TRU-TCA2-1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

No data available for mRNA/cDNA for TRU-TCA2-1 Gene

Expression for TRU-TCA2-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRU-TCA2-1 Gene

Orthologs for TRU-TCA2-1 Gene

No data available for Orthologs and Evolution for TRU-TCA2-1 Gene

Paralogs for TRU-TCA2-1 Gene

No data available for Paralogs for TRU-TCA2-1 Gene

Variants for TRU-TCA2-1 Gene

Relevant External Links for TRU-TCA2-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRU-TCA2-1 Gene

Disorders for TRU-TCA2-1 Gene

No disorders were found for TRU-TCA2-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRU-TCA2-1 Gene

Publications for TRU-TCA2-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64
  2. A human opal suppressor tRNA gene and pseudogene. (PMID: 3156131) O'Neill V.A. … Hatfield D.L. (J. Biol. Chem. 1985) 3 64

Products for TRU-TCA2-1 Gene

Sources for TRU-TCA2-1 Gene

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