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Aliases for TRU-TCA1-1 Gene

Subcategory (RNA class) for TRU-TCA1-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRU-TCA1-1 Gene

  • Transfer RNA-SeC (TCA) 1-1 2 3
  • Transfer RNA Selenocysteine/Phosphoserine (Opal Suppressor) 2 3
  • Transfer RNA Selenocysteine 1 (Anticodon UCA) 2 3
  • TRNA Phosphoserine (Opal Suppressor) 2 3
  • TRNAU1 3 6
  • TRSP 3 6
  • TRNA Selenocysteine/Phosphoserine (Opal Suppressor) 3
  • TRNA-SeC-TCA-1-1 3
  • TRNA(Sec) 3

External Ids for TRU-TCA1-1 Gene

Previous HGNC Symbols for TRU-TCA1-1 Gene

  • TRSP
  • TRNAU1

Summaries for TRU-TCA1-1 Gene

Entrez Gene Summary for TRU-TCA1-1 Gene

  • Opal suppressor phosphoserine tRNAs are the only authentic, naturally occurring suppressor tRNAs in higher eukaryotes. The human genome contains a single opal suppressor phosphoserine tRNA gene, TRNAU1 (O'Neill et al., 1985 [PubMed 3156131]).[supplied by OMIM, Nov 2010]

GeneCards Summary for TRU-TCA1-1 Gene

TRU-TCA1-1 (Transfer RNA-SeC (TCA) 1-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRU-TCA1-1 Gene

Genomics for TRU-TCA1-1 Gene

Genomic Location for TRU-TCA1-1 Gene

Start:
45,478,602 bp from pter
End:
45,478,687 bp from pter
Size:
86 bases
Orientation:
Minus strand

Genomic View for TRU-TCA1-1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRU-TCA1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRU-TCA1-1 Gene

No data available for Regulatory Elements for TRU-TCA1-1 Gene

Proteins for TRU-TCA1-1 Gene

Post-translational modifications for TRU-TCA1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRU-TCA1-1 Gene

Domains for TRU-TCA1-1 Gene

Gene Families for TRU-TCA1-1 Gene

HGNC:
  • TRNA :ncRNAs / Transfer RNA, cytoplasmic

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRU-TCA1-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRU-TCA1-1 Gene

Function for TRU-TCA1-1 Gene

genes like me logo Genes that share phenotypes with TRU-TCA1-1: view

Animal Models for TRU-TCA1-1 Gene

MGI Knock Outs for TRU-TCA1-1:

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , miRNA , Transcription Factor Targeting and HOMER Transcription for TRU-TCA1-1 Gene

Localization for TRU-TCA1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRU-TCA1-1 Gene

Pathways for TRU-TCA1-1 Gene

SuperPathways for TRU-TCA1-1 Gene

No Data Available

Interacting Proteins for TRU-TCA1-1 Gene

Gene Ontology (GO) - Biological Process for TRU-TCA1-1 Gene

None

No data available for Pathways by source for TRU-TCA1-1 Gene

Transcripts for TRU-TCA1-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRU-TCA1-1 Gene

No ASD Table

Relevant External Links for TRU-TCA1-1 Gene

GeneLoc Exon Structure for
TRU-TCA1-1
ECgene alternative splicing isoforms for
TRU-TCA1-1

No data available for mRNA/cDNA for TRU-TCA1-1 Gene

Expression for TRU-TCA1-1 Gene

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for TRU-TCA1-1 Gene

Orthologs for TRU-TCA1-1 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for TRU-TCA1-1 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia n-Ts2 16
Species with no ortholog for TRU-TCA1-1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

No data available for Evolution for TRU-TCA1-1 Gene

Paralogs for TRU-TCA1-1 Gene

No data available for Paralogs for TRU-TCA1-1 Gene

Variants for TRU-TCA1-1 Gene

Relevant External Links for TRU-TCA1-1 Gene

HapMap Linkage Disequilibrium report
TRU-TCA1-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for TRU-TCA1-1 Gene

Disorders for TRU-TCA1-1 Gene

No disorders were found for TRU-TCA1-1 Gene.

No data available for UniProtKB/Swiss-Prot for TRU-TCA1-1 Gene

Publications for TRU-TCA1-1 Gene

  1. Regional localization of the selenocysteine tRNA gene (TRSP) on human chromosome 19. (PMID: 1395717) Mitchell A. … McBride O.W. (Cytogenet. Cell Genet. 1992) 2 3
  2. A human opal suppressor tRNA gene and pseudogene. (PMID: 3156131) O'Neill V.A. … Hatfield D.L. (J. Biol. Chem. 1985) 3
  3. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3
  4. The dual identities of mammalian tRNA(Sec) for SerRS and selenocysteine synthase. (PMID: 9870610) Mizutani T. … Totsuka T. (Mol. Biol. Rep. 1998) 23
  5. Evolution of selenium utilization traits. (PMID: 16086848) Romero H. … Salinas G. (Genome Biol. 2005) 23

Products for TRU-TCA1-1 Gene

Sources for TRU-TCA1-1 Gene

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