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Aliases for TRU-TCA1-1 Gene

Subcategory (RNA class) for TRU-TCA1-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRU-TCA1-1 Gene

  • Transfer RNA-SeC (TCA) 1-1 2 3
  • Transfer RNA Selenocysteine/Phosphoserine (Opal Suppressor) 2 3
  • Transfer RNA Selenocysteine 1 (Anticodon UCA) 2 3
  • TRNA Phosphoserine (Opal Suppressor) 2 3
  • TRNA Selenocysteine/Phosphoserine (Opal Suppressor) 3
  • TRNA-SeC-TCA-1-1 3
  • TRNA(Sec) 3
  • TRNAU1 3
  • TRSP 3

External Ids for TRU-TCA1-1 Gene

Previous HGNC Symbols for TRU-TCA1-1 Gene

  • TRSP
  • TRNAU1

Summaries for TRU-TCA1-1 Gene

Entrez Gene Summary for TRU-TCA1-1 Gene

  • Opal suppressor phosphoserine tRNAs are the only authentic, naturally occurring suppressor tRNAs in higher eukaryotes. The human genome contains a single opal suppressor phosphoserine tRNA gene, TRNAU1 (O'Neill et al., 1985 [PubMed 3156131]).[supplied by OMIM, Nov 2010]

GeneCards Summary for TRU-TCA1-1 Gene

TRU-TCA1-1 (Transfer RNA-SeC (TCA) 1-1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with TRU-TCA1-1 include Thyroid Hormone Metabolism, Abnormal.

Additional gene information for TRU-TCA1-1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRU-TCA1-1 Gene

Genomics for TRU-TCA1-1 Gene

GeneHancer (GH) Regulatory Elements for TRU-TCA1-1 Gene

Promoters and enhancers for TRU-TCA1-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I045477 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 550.8 +0.4 387 2.4 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A ZNF2 ZBTB7B IRF4 ERCC1 PIR58452 TRU-TCA1-1 ZNF180 CCDC61 CD3EAP IRF2BP1 CLASRP PPP1R37 ENSG00000268810
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRU-TCA1-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRU-TCA1-1 Gene

Genomic Locations for TRU-TCA1-1 Gene
chr19:45,478,602-45,478,687
(GRCh38/hg38)
Size:
86 bases
Orientation:
Minus strand
chr19:45,981,860-45,981,945
(GRCh37/hg19)

Genomic View for TRU-TCA1-1 Gene

Genes around TRU-TCA1-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRU-TCA1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRU-TCA1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TRU-TCA1-1 Gene

Proteins for TRU-TCA1-1 Gene

Post-translational modifications for TRU-TCA1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRU-TCA1-1 Gene

Domains & Families for TRU-TCA1-1 Gene

Gene Families for TRU-TCA1-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRU-TCA1-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRU-TCA1-1 Gene

Function for TRU-TCA1-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRU-TCA1-1 Gene

Localization for TRU-TCA1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRU-TCA1-1 Gene

Pathways & Interactions for TRU-TCA1-1 Gene

SuperPathways for TRU-TCA1-1 Gene

No Data Available

Interacting Proteins for TRU-TCA1-1 Gene

Gene Ontology (GO) - Biological Process for TRU-TCA1-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRU-TCA1-1 Gene

Drugs & Compounds for TRU-TCA1-1 Gene

No Compound Related Data Available

Transcripts for TRU-TCA1-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRU-TCA1-1 Gene

No ASD Table

Relevant External Links for TRU-TCA1-1 Gene

GeneLoc Exon Structure for
TRU-TCA1-1
ECgene alternative splicing isoforms for
TRU-TCA1-1

No data available for mRNA/cDNA for TRU-TCA1-1 Gene

Expression for TRU-TCA1-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRU-TCA1-1 Gene

Orthologs for TRU-TCA1-1 Gene

No data available for Orthologs and Evolution for TRU-TCA1-1 Gene

Paralogs for TRU-TCA1-1 Gene

No data available for Paralogs for TRU-TCA1-1 Gene

Variants for TRU-TCA1-1 Gene

Additional Variant Information for TRU-TCA1-1 Gene

Human Gene Mutation Database (HGMD)
TRU-TCA1-1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRU-TCA1-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRU-TCA1-1 Gene

Disorders for TRU-TCA1-1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TRU-TCA1-1 Gene - From: ClinVar

Disorder Aliases PubMed IDs
thyroid hormone metabolism, abnormal
  • short stature-delayed bone age due to thyroid hormone metabolism deficiency
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with TRU-TCA1-1: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for TRU-TCA1-1 Gene

Publications for TRU-TCA1-1 Gene

  1. Regional localization of the selenocysteine tRNA gene (TRSP) on human chromosome 19. (PMID: 1395717) Mitchell A … McBride OW (Cytogenetics and cell genetics 1992) 2 3 58
  2. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58
  3. Evolution of selenium utilization traits. (PMID: 16086848) Romero H … Salinas G (Genome biology 2005) 22 58
  4. The dual identities of mammalian tRNA(Sec) for SerRS and selenocysteine synthase. (PMID: 9870610) Mizutani T … Totsuka T (Molecular biology reports 1998) 22 58
  5. A human opal suppressor tRNA gene and pseudogene. (PMID: 3156131) O'Neill VA … Hatfield DL (The Journal of biological chemistry 1985) 3 58

Products for TRU-TCA1-1 Gene

Sources for TRU-TCA1-1 Gene

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