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Aliases for TRU-TCA1-1 Gene

Subcategory (RNA class) for TRU-TCA1-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRU-TCA1-1 Gene

  • Transfer RNA-SeC (TCA) 1-1 2 3
  • Transfer RNA Selenocysteine/Phosphoserine (Opal Suppressor) 2 3
  • Transfer RNA Selenocysteine 1 (Anticodon UCA) 2 3
  • TRNA Phosphoserine (Opal Suppressor) 2 3
  • TRNA Selenocysteine/Phosphoserine (Opal Suppressor) 3
  • TRNA-SeC-TCA-1-1 3
  • TRNA(Sec) 3
  • TRNAU1 3
  • TRSP 3

External Ids for TRU-TCA1-1 Gene

Previous HGNC Symbols for TRU-TCA1-1 Gene

  • TRSP
  • TRNAU1

Summaries for TRU-TCA1-1 Gene

Entrez Gene Summary for TRU-TCA1-1 Gene

  • Opal suppressor phosphoserine tRNAs are the only authentic, naturally occurring suppressor tRNAs in higher eukaryotes. The human genome contains a single opal suppressor phosphoserine tRNA gene, TRNAU1 (O'Neill et al., 1985 [PubMed 3156131]).[supplied by OMIM, Nov 2010]

GeneCards Summary for TRU-TCA1-1 Gene

TRU-TCA1-1 (Transfer RNA-SeC (TCA) 1-1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with TRU-TCA1-1 include Thyroid Hormone Metabolism, Abnormal.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRU-TCA1-1 Gene

Genomics for TRU-TCA1-1 Gene

Regulatory Elements for TRU-TCA1-1 Gene

Enhancers for TRU-TCA1-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F045477 0.9 FANTOM5 ENCODE 0.8 +0.4 388 2.4 PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A ZNF2 YY1 ZNF143 ZNF207 ZNF180 IRF2BP1 CD3EAP FBXO46 CCDC61 ENSG00000269148 PPP1R37 PPM1N ENSG00000268810 VASP
GH19F045476 0.6 ENCODE 0.8 +2.8 2790 0.2 NR2F1 ZNF384 ZBTB8A ZKSCAN1 CD3EAP PPP1R13L RTN2 VASP ERCC2 EML2 MIR330 GC19P045474 TRU-TCA1-1 PIR58452
GH19F045479 0.9 ENCODE 0.8 +3.4 3380 0.2 POLR2A ADNP CEBPG CHD7 ZBTB40 CD3EAP PPP1R13L RTN2 VASP ERCC1 GC19P045474 TRU-TCA1-1 PIR58452
GH19F045481 0.5 ENCODE 0.8 +2.3 2280 0.2 HLF ZFP64 ZBTB11 ZNF140 ZNF266 REST ZBTB8A CHD7 ZNF518A ZNF781 ZNF180 CCDC61 ENSG00000268810 CEACAM19 QPCTL RTN2 VASP CD3EAP PPP1R13L DMWD
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRU-TCA1-1 on UCSC Golden Path with GeneCards custom track

Promoters for TRU-TCA1-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001419493 -113 1201 PKNOX1 ARNT CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A ZNF2 YY1 ZNF143

Genomic Location for TRU-TCA1-1 Gene

Chromosome:
19
Start:
45,478,602 bp from pter
End:
45,478,687 bp from pter
Size:
86 bases
Orientation:
Minus strand

Genomic View for TRU-TCA1-1 Gene

Genes around TRU-TCA1-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRU-TCA1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRU-TCA1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TRU-TCA1-1 Gene

Proteins for TRU-TCA1-1 Gene

Post-translational modifications for TRU-TCA1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRU-TCA1-1 Gene

Domains & Families for TRU-TCA1-1 Gene

Gene Families for TRU-TCA1-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRU-TCA1-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRU-TCA1-1 Gene

Function for TRU-TCA1-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRU-TCA1-1 Gene

Localization for TRU-TCA1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRU-TCA1-1 Gene

Pathways & Interactions for TRU-TCA1-1 Gene

SuperPathways for TRU-TCA1-1 Gene

No Data Available

Interacting Proteins for TRU-TCA1-1 Gene

Gene Ontology (GO) - Biological Process for TRU-TCA1-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRU-TCA1-1 Gene

Transcripts for TRU-TCA1-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRU-TCA1-1 Gene

No ASD Table

Relevant External Links for TRU-TCA1-1 Gene

GeneLoc Exon Structure for
TRU-TCA1-1
ECgene alternative splicing isoforms for
TRU-TCA1-1

No data available for mRNA/cDNA for TRU-TCA1-1 Gene

Expression for TRU-TCA1-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRU-TCA1-1 Gene

Orthologs for TRU-TCA1-1 Gene

No data available for Orthologs and Evolution for TRU-TCA1-1 Gene

Paralogs for TRU-TCA1-1 Gene

No data available for Paralogs for TRU-TCA1-1 Gene

Variants for TRU-TCA1-1 Gene

Relevant External Links for TRU-TCA1-1 Gene

Human Gene Mutation Database (HGMD)
TRU-TCA1-1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRU-TCA1-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRU-TCA1-1 Gene

Disorders for TRU-TCA1-1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TRU-TCA1-1 Gene - From: ClinVar

Disorder Aliases PubMed IDs
thyroid hormone metabolism, abnormal
  • short stature-delayed bone age due to thyroid hormone metabolism deficiency
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with TRU-TCA1-1: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for TRU-TCA1-1 Gene

Publications for TRU-TCA1-1 Gene

  1. Regional localization of the selenocysteine tRNA gene (TRSP) on human chromosome 19. (PMID: 1395717) Mitchell A. … McBride O.W. (Cytogenet. Cell Genet. 1992) 2 3 64
  2. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64
  3. Evolution of selenium utilization traits. (PMID: 16086848) Romero H. … Salinas G. (Genome Biol. 2005) 22 64
  4. The dual identities of mammalian tRNA(Sec) for SerRS and selenocysteine synthase. (PMID: 9870610) Mizutani T. … Totsuka T. (Mol. Biol. Rep. 1998) 22 64
  5. A human opal suppressor tRNA gene and pseudogene. (PMID: 3156131) O'Neill V.A. … Hatfield D.L. (J. Biol. Chem. 1985) 3 64

Products for TRU-TCA1-1 Gene

Sources for TRU-TCA1-1 Gene

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