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Aliases for TRT-CGT3-1 Gene

Subcategory (RNA class) for TRT-CGT3-1 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRT-CGT3-1 Gene

  • Transfer RNA-Thr (CGT) 3-1 2 3
  • Transfer RNA Threonine 17 (Anticodon CGU) 2 3
  • TRNA-Thr-CGT-3-1 3
  • TRNAT17 3

External Ids for TRT-CGT3-1 Gene

ORGUL Members for TRT-CGT3-1 Gene

Previous HGNC Symbols for TRT-CGT3-1 Gene

  • TRNAT17

Previous GeneCards Identifiers for TRT-CGT3-1 Gene

  • GC06M028649
  • GC06M028652
  • GC06M028655
  • GC06M028657

Summaries for TRT-CGT3-1 Gene

GeneCards Summary for TRT-CGT3-1 Gene

TRT-CGT3-1 (Transfer RNA-Thr (CGT) 3-1) is an RNA Gene, and is affiliated with the tRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRT-CGT3-1 Gene

Genomics for TRT-CGT3-1 Gene

Regulatory Elements for TRT-CGT3-1 Gene

Enhancers for TRT-CGT3-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F028643 1.2 Ensembl ENCODE 0.8 +4.6 4558 1.0 PKNOX1 ATF1 ARID4B FEZF1 BRCA1 ZNF2 GTF3C2 FOS KAT8 RCOR2 ZKSCAN3 ZKSCAN4 ZKSCAN8 GPX5 ZNF603P TRIM27 ZNF311 GC06M028666 TRA-TGC2-1 TRT-CGT3-1
GH06F028647 1.1 ENCODE 0.8 -0.4 -403 1.9 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF766 CBX5 FOS ZKSCAN8 ZKSCAN3 ZKSCAN4 GPX5 ZBED9 GC06M028666 LINC00533 TRT-CGT3-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRT-CGT3-1 on UCSC Golden Path with GeneCards custom track

Promoters for TRT-CGT3-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001879544 -621 1799 ARNT CREB3L1 ARID4B FEZF1 DMAP1 ZNF2 ZNF766 CBX5 FOS JUNB

Genomic Location for TRT-CGT3-1 Gene

Chromosome:
6
Start:
28,648,207 bp from pter
End:
28,648,280 bp from pter
Size:
74 bases
Orientation:
Minus strand

Genomic View for TRT-CGT3-1 Gene

Genes around TRT-CGT3-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRT-CGT3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRT-CGT3-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRT-CGT3-1 Gene

Proteins for TRT-CGT3-1 Gene

Post-translational modifications for TRT-CGT3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRT-CGT3-1 Gene

Domains & Families for TRT-CGT3-1 Gene

Gene Families for TRT-CGT3-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRT-CGT3-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRT-CGT3-1 Gene

Function for TRT-CGT3-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRT-CGT3-1 Gene

Localization for TRT-CGT3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRT-CGT3-1 Gene

Pathways & Interactions for TRT-CGT3-1 Gene

SuperPathways for TRT-CGT3-1 Gene

No Data Available

Interacting Proteins for TRT-CGT3-1 Gene

Gene Ontology (GO) - Biological Process for TRT-CGT3-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRT-CGT3-1 Gene

Transcripts for TRT-CGT3-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRT-CGT3-1 Gene

No ASD Table

Relevant External Links for TRT-CGT3-1 Gene

GeneLoc Exon Structure for
TRT-CGT3-1
ECgene alternative splicing isoforms for
TRT-CGT3-1

No data available for mRNA/cDNA for TRT-CGT3-1 Gene

Expression for TRT-CGT3-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRT-CGT3-1 Gene

Orthologs for TRT-CGT3-1 Gene

No data available for Orthologs and Evolution for TRT-CGT3-1 Gene

Paralogs for TRT-CGT3-1 Gene

No data available for Paralogs for TRT-CGT3-1 Gene

Variants for TRT-CGT3-1 Gene

Relevant External Links for TRT-CGT3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRT-CGT3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRT-CGT3-1 Gene

Disorders for TRT-CGT3-1 Gene

No disorders were found for TRT-CGT3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRT-CGT3-1 Gene

Publications for TRT-CGT3-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRT-CGT3-1 Gene

Sources for TRT-CGT3-1 Gene

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