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Aliases for TRT-AGT1-3 Gene

Subcategory (RNA class) for TRT-AGT1-3 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRT-AGT1-3 Gene

  • Transfer RNA-Thr (AGT) 1-3 2 3
  • Transfer RNA Threonine 4 (Anticodon AGU) 2 3
  • TRNA-Thr-AGT-1-3 3
  • TRNAT4 3

External Ids for TRT-AGT1-3 Gene

Previous HGNC Symbols for TRT-AGT1-3 Gene

  • TRNAT4

Summaries for TRT-AGT1-3 Gene

GeneCards Summary for TRT-AGT1-3 Gene

TRT-AGT1-3 (Transfer RNA-Thr (AGT) 1-3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRT-AGT1-3 Gene

Genomics for TRT-AGT1-3 Gene

Regulatory Elements for TRT-AGT1-3 Gene

Enhancers for TRT-AGT1-3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F033175 1.6 FANTOM5 ENCODE 0.8 +0.1 84 2.7 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 ZFP41 GPATCH1 LSM14A WDR88 AKR1B1P7 LOC100996681 RPL21P131 SLC7A10 FAAP24 PDCD5 RGS9BP
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRT-AGT1-3 on UCSC Golden Path with GeneCards custom track

Promoters for TRT-AGT1-3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000345594 243 2201 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 ZFP41

Genomic Location for TRT-AGT1-3 Gene

Chromosome:
19
Start:
33,177,057 bp from pter
End:
33,177,130 bp from pter
Size:
74 bases
Orientation:
Plus strand

Genomic View for TRT-AGT1-3 Gene

Genes around TRT-AGT1-3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRT-AGT1-3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRT-AGT1-3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRT-AGT1-3 Gene

Proteins for TRT-AGT1-3 Gene

Post-translational modifications for TRT-AGT1-3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRT-AGT1-3 Gene

Domains & Families for TRT-AGT1-3 Gene

Gene Families for TRT-AGT1-3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRT-AGT1-3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRT-AGT1-3 Gene

Function for TRT-AGT1-3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRT-AGT1-3 Gene

Localization for TRT-AGT1-3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRT-AGT1-3 Gene

Pathways & Interactions for TRT-AGT1-3 Gene

SuperPathways for TRT-AGT1-3 Gene

No Data Available

Interacting Proteins for TRT-AGT1-3 Gene

Gene Ontology (GO) - Biological Process for TRT-AGT1-3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRT-AGT1-3 Gene

Transcripts for TRT-AGT1-3 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRT-AGT1-3 Gene

No ASD Table

Relevant External Links for TRT-AGT1-3 Gene

GeneLoc Exon Structure for
TRT-AGT1-3
ECgene alternative splicing isoforms for
TRT-AGT1-3

No data available for mRNA/cDNA for TRT-AGT1-3 Gene

Expression for TRT-AGT1-3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRT-AGT1-3 Gene

Orthologs for TRT-AGT1-3 Gene

No data available for Orthologs and Evolution for TRT-AGT1-3 Gene

Paralogs for TRT-AGT1-3 Gene

No data available for Paralogs for TRT-AGT1-3 Gene

Variants for TRT-AGT1-3 Gene

Relevant External Links for TRT-AGT1-3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRT-AGT1-3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRT-AGT1-3 Gene

Disorders for TRT-AGT1-3 Gene

No disorders were found for TRT-AGT1-3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRT-AGT1-3 Gene

Publications for TRT-AGT1-3 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRT-AGT1-3 Gene

Sources for TRT-AGT1-3 Gene

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