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Aliases for TRSUP-TTA3-1 Gene

Subcategory (RNA class) for TRSUP-TTA3-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRSUP-TTA3-1 Gene

  • Transfer RNA Suppressor (TTA) 3-1 2 3
  • Transfer RNA Suppressor 5 (Anticodon UUA) Pseudogene 2 3
  • TRNA-Sup-TTA-3-1 3
  • TRNASUP5P 3

External Ids for TRSUP-TTA3-1 Gene

Previous HGNC Symbols for TRSUP-TTA3-1 Gene

  • TRNASUP5P

Summaries for TRSUP-TTA3-1 Gene

GeneCards Summary for TRSUP-TTA3-1 Gene

TRSUP-TTA3-1 (Transfer RNA Suppressor (TTA) 3-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRSUP-TTA3-1 Gene

Genomics for TRSUP-TTA3-1 Gene

Regulatory Elements for TRSUP-TTA3-1 Gene

Enhancers for TRSUP-TTA3-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G007324 0.9 ENCODE dbSUPER 0.7 +0.1 134 0.1 ZNF263 ZBTB10 TBP CTCF MAZ SREBF2 RAD21 ZNF366 POLR3A IKZF1 TRSUP-TTA3-1 MIR4798
GH04G007322 0.8 ENCODE dbSUPER 0.7 +1.4 1354 0.2 SCRT1 POLR2A SCRT2 MLLT1 TBX21 ZIC2 ZNF18 TRSUP-TTA3-1 MIR4798
GH04G007329 0.8 ENCODE dbSUPER 0.7 -4.9 -4947 0.2 CTCF JUND MAX REST ZIC2 TRSUP-TTA3-1 GC04M007348
GH04G007325 0.8 ENCODE dbSUPER 0.7 -0.7 -667 0.2 CTCF ZFHX2 BHLHE40 MLLT1 EGR2 TRSUP-TTA3-1 GC04M007348
GH04G007335 1.2 Ensembl ENCODE dbSUPER 0.4 -11.8 -11819 0.4 CTCF ZNF654 NR2F1 REST RAD21 TEAD3 SREBF1 GABPB1 SMC3 ZNF143 TRSUP-TTA3-1 GC04M007348
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRSUP-TTA3-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRSUP-TTA3-1 Gene

Chromosome:
4
Start:
7,324,111 bp from pter
End:
7,324,182 bp from pter
Size:
72 bases
Orientation:
Minus strand

Genomic View for TRSUP-TTA3-1 Gene

Genes around TRSUP-TTA3-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRSUP-TTA3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRSUP-TTA3-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRSUP-TTA3-1 Gene

Proteins for TRSUP-TTA3-1 Gene

Post-translational modifications for TRSUP-TTA3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRSUP-TTA3-1 Gene

Domains & Families for TRSUP-TTA3-1 Gene

Gene Families for TRSUP-TTA3-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRSUP-TTA3-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRSUP-TTA3-1 Gene

Function for TRSUP-TTA3-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRSUP-TTA3-1 Gene

Localization for TRSUP-TTA3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRSUP-TTA3-1 Gene

Pathways & Interactions for TRSUP-TTA3-1 Gene

SuperPathways for TRSUP-TTA3-1 Gene

No Data Available

Interacting Proteins for TRSUP-TTA3-1 Gene

Gene Ontology (GO) - Biological Process for TRSUP-TTA3-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRSUP-TTA3-1 Gene

Transcripts for TRSUP-TTA3-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRSUP-TTA3-1 Gene

No ASD Table

Relevant External Links for TRSUP-TTA3-1 Gene

GeneLoc Exon Structure for
TRSUP-TTA3-1
ECgene alternative splicing isoforms for
TRSUP-TTA3-1

No data available for mRNA/cDNA for TRSUP-TTA3-1 Gene

Expression for TRSUP-TTA3-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRSUP-TTA3-1 Gene

Orthologs for TRSUP-TTA3-1 Gene

No data available for Orthologs and Evolution for TRSUP-TTA3-1 Gene

Paralogs for TRSUP-TTA3-1 Gene

No data available for Paralogs for TRSUP-TTA3-1 Gene

Variants for TRSUP-TTA3-1 Gene

Relevant External Links for TRSUP-TTA3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRSUP-TTA3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRSUP-TTA3-1 Gene

Disorders for TRSUP-TTA3-1 Gene

No disorders were found for TRSUP-TTA3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRSUP-TTA3-1 Gene

Publications for TRSUP-TTA3-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRSUP-TTA3-1 Gene

Sources for TRSUP-TTA3-1 Gene

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