Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TRS-GCT4-2 Gene

Subcategory (RNA class) for TRS-GCT4-2 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRS-GCT4-2 Gene

  • Transfer RNA-Ser (GCT) 4-2 2 3
  • Transfer RNA Serine 18 (Anticodon GCU) 2 3
  • Transfer RNA-Ser (GCT) 4-1 2 3
  • TRNA-Ser-GCT-4-1 3
  • TRS-GCT4-1 3
  • TRNAS18 3

External Ids for TRS-GCT4-2 Gene

Previous HGNC Symbols for TRS-GCT4-2 Gene

  • TRNAS18
  • TRS-GCT4-1

Previous GeneCards Identifiers for TRS-GCT4-2 Gene

  • GC17P008189
  • GC17P008200

Summaries for TRS-GCT4-2 Gene

GeneCards Summary for TRS-GCT4-2 Gene

TRS-GCT4-2 (Transfer RNA-Ser (GCT) 4-2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRS-GCT4-2 Gene

Genomics for TRS-GCT4-2 Gene

Regulatory Elements for TRS-GCT4-2 Gene

Enhancers for TRS-GCT4-2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F040589 1.2 Ensembl ENCODE 0.8 +3.2 3231 2.6 ATF1 YBX1 ZNF48 ZNF2 YY1 ZNF121 GTF3C2 ZNF143 KLF13 DEK C15orf57 RAD51 DNAJC17 ENSG00000259211 BAHD1 RPAP1 RAD51-AS1 BMF RMDN3 GCHFR
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRS-GCT4-2 on UCSC Golden Path with GeneCards custom track

Promoters for TRS-GCT4-2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000020583 -894 2401 PKNOX1 ARNT CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for TRS-GCT4-2 Gene

Chromosome:
15
Start:
40,593,825 bp from pter
End:
40,593,906 bp from pter
Size:
82 bases
Orientation:
Minus strand

Genomic View for TRS-GCT4-2 Gene

Genes around TRS-GCT4-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRS-GCT4-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRS-GCT4-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRS-GCT4-2 Gene

Proteins for TRS-GCT4-2 Gene

Post-translational modifications for TRS-GCT4-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRS-GCT4-2 Gene

Domains & Families for TRS-GCT4-2 Gene

Gene Families for TRS-GCT4-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRS-GCT4-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRS-GCT4-2 Gene

Function for TRS-GCT4-2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRS-GCT4-2 Gene

Localization for TRS-GCT4-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRS-GCT4-2 Gene

Pathways & Interactions for TRS-GCT4-2 Gene

SuperPathways for TRS-GCT4-2 Gene

No Data Available

Interacting Proteins for TRS-GCT4-2 Gene

Gene Ontology (GO) - Biological Process for TRS-GCT4-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRS-GCT4-2 Gene

Transcripts for TRS-GCT4-2 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRS-GCT4-2 Gene

No ASD Table

Relevant External Links for TRS-GCT4-2 Gene

GeneLoc Exon Structure for
TRS-GCT4-2
ECgene alternative splicing isoforms for
TRS-GCT4-2

No data available for mRNA/cDNA for TRS-GCT4-2 Gene

Expression for TRS-GCT4-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRS-GCT4-2 Gene

Orthologs for TRS-GCT4-2 Gene

No data available for Orthologs and Evolution for TRS-GCT4-2 Gene

Paralogs for TRS-GCT4-2 Gene

No data available for Paralogs for TRS-GCT4-2 Gene

Variants for TRS-GCT4-2 Gene

Relevant External Links for TRS-GCT4-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRS-GCT4-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRS-GCT4-2 Gene

Disorders for TRS-GCT4-2 Gene

No disorders were found for TRS-GCT4-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRS-GCT4-2 Gene

Publications for TRS-GCT4-2 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRS-GCT4-2 Gene

Sources for TRS-GCT4-2 Gene

Content
Loading form....