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Aliases for TRS-CGA1-1 Gene

Subcategory (RNA class) for TRS-CGA1-1 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRS-CGA1-1 Gene

  • Transfer RNA-Ser (CGA) 1-1 2 3
  • Transfer RNA Serine 6 (Anticodon CGA) 2 3
  • TRNA-Ser-CGA-1-1 3
  • TRNAS6 3

External Ids for TRS-CGA1-1 Gene

ORGUL Members for TRS-CGA1-1 Gene

Previous HGNC Symbols for TRS-CGA1-1 Gene

  • TRNAS6

Previous GeneCards Identifiers for TRS-CGA1-1 Gene

  • GC17M008167
  • GC17M008220
  • GC17M008276
  • GC17M008336

Summaries for TRS-CGA1-1 Gene

GeneCards Summary for TRS-CGA1-1 Gene

TRS-CGA1-1 (Transfer RNA-Ser (CGA) 1-1) is an RNA Gene, and is affiliated with the tRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRS-CGA1-1 Gene

Genomics for TRS-CGA1-1 Gene

Regulatory Elements for TRS-CGA1-1 Gene

Enhancers for TRS-CGA1-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F008137 1 Ensembl ENCODE 0.8 -0.5 -489 3.7 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF263 SP3 NFYC DVL2 PFAS LOC105371523 SNORD10 CTC1 CNTROB SENP3 SNORA48 NEURL4 KCTD11
GH17F008134 0.5 ENCODE 0.8 +4.9 4890 0.0 JUND ZNF146 ZNF280D ZNF580 ZMYM3 FOS SNORD118 TMEM107 AURKB CTC1 PFAS GC17M008404 TRS-CGA1-1 LOC105376799
GH17F008133 0.6 ENCODE 0.4 +5.3 5320 0.7 ZNF146 ZNF280D MAX ZMYM3 ZNF341 ZNF580 FOS KDM1A SNORD118 TMEM107 BORCS6 CHD3 AURKB PFAS CTC1 ALOX15B GC17M008404 TRS-CGA1-1
GH17F008128 0.8 FANTOM5 0.4 +10.4 10373 0.2 RFX1 ZBTB2 FOXA3 FOXA1 RARA GATA3 MIER3 ZNF366 CEBPA NR2F6 ODF4 SNORD118 TMEM107 BORCS6 CHD3 ALOX15B CNTROB LOC105376799 TRS-CGA1-1 GC17M008404
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRS-CGA1-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRS-CGA1-1 Gene

Chromosome:
17
Start:
8,138,881 bp from pter
End:
8,138,962 bp from pter
Size:
82 bases
Orientation:
Minus strand

Genomic View for TRS-CGA1-1 Gene

Genes around TRS-CGA1-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRS-CGA1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRS-CGA1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRS-CGA1-1 Gene

Proteins for TRS-CGA1-1 Gene

Post-translational modifications for TRS-CGA1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRS-CGA1-1 Gene

Domains & Families for TRS-CGA1-1 Gene

Gene Families for TRS-CGA1-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRS-CGA1-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRS-CGA1-1 Gene

Function for TRS-CGA1-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRS-CGA1-1 Gene

Localization for TRS-CGA1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRS-CGA1-1 Gene

Pathways & Interactions for TRS-CGA1-1 Gene

SuperPathways for TRS-CGA1-1 Gene

No Data Available

Interacting Proteins for TRS-CGA1-1 Gene

Gene Ontology (GO) - Biological Process for TRS-CGA1-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRS-CGA1-1 Gene

Transcripts for TRS-CGA1-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRS-CGA1-1 Gene

No ASD Table

Relevant External Links for TRS-CGA1-1 Gene

GeneLoc Exon Structure for
TRS-CGA1-1
ECgene alternative splicing isoforms for
TRS-CGA1-1

No data available for mRNA/cDNA for TRS-CGA1-1 Gene

Expression for TRS-CGA1-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRS-CGA1-1 Gene

Orthologs for TRS-CGA1-1 Gene

No data available for Orthologs and Evolution for TRS-CGA1-1 Gene

Paralogs for TRS-CGA1-1 Gene

No data available for Paralogs for TRS-CGA1-1 Gene

Variants for TRS-CGA1-1 Gene

Relevant External Links for TRS-CGA1-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRS-CGA1-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRS-CGA1-1 Gene

Disorders for TRS-CGA1-1 Gene

No disorders were found for TRS-CGA1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRS-CGA1-1 Gene

Publications for TRS-CGA1-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRS-CGA1-1 Gene

Sources for TRS-CGA1-1 Gene

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