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Aliases for TRS-AGA7-1 Gene

Subcategory (RNA class) for TRS-AGA7-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRS-AGA7-1 Gene

  • Transfer RNA-Ser (AGA) 7-1 2 3
  • Transfer RNA Serine 29 (Anticodon AGA) Pseudogene 2 3
  • TRNA-Ser-AGA-7-1 3
  • TRNAS29P 3

External Ids for TRS-AGA7-1 Gene

Previous HGNC Symbols for TRS-AGA7-1 Gene

  • TRNAS29P

Summaries for TRS-AGA7-1 Gene

GeneCards Summary for TRS-AGA7-1 Gene

TRS-AGA7-1 (Transfer RNA-Ser (AGA) 7-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRS-AGA7-1 Gene

Genomics for TRS-AGA7-1 Gene

Regulatory Elements for TRS-AGA7-1 Gene

Enhancers for TRS-AGA7-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F031503 1.2 Ensembl ENCODE 0.8 +2.4 2401 0.6 ARID4B ZNF48 ZNF2 GLIS2 ZNF143 KLF7 ZNF263 MIER2 REST ZNF518A TSPY26P DEFB121 TRS-AGA7-1 HM13
GH20F031495 1 Ensembl ENCODE 0.8 -3.6 -3635 2.6 MXI1 MAX KLF17 ZMYM3 BMI1 ZBTB40 ZIC2 ZFHX2 GATA3 PRDM10 HM13 DEFB122 DEFB121 TRS-AGA7-1 LINC00028
GH20F031494 0.8 ENCODE 0.4 -6.6 -6588 0.2 CTCF ATF1 TEAD4 CEBPG ZNF644 RAD21 TEAD3 FOXK2 ZNF143 TRIM24 HM13 LINC00028 TRS-AGA7-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRS-AGA7-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRS-AGA7-1 Gene

Chromosome:
20
Start:
31,500,900 bp from pter
End:
31,500,971 bp from pter
Size:
72 bases
Orientation:
Plus strand

Genomic View for TRS-AGA7-1 Gene

Genes around TRS-AGA7-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRS-AGA7-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRS-AGA7-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRS-AGA7-1 Gene

Proteins for TRS-AGA7-1 Gene

Post-translational modifications for TRS-AGA7-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRS-AGA7-1 Gene

Domains & Families for TRS-AGA7-1 Gene

Gene Families for TRS-AGA7-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRS-AGA7-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRS-AGA7-1 Gene

Function for TRS-AGA7-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRS-AGA7-1 Gene

Localization for TRS-AGA7-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRS-AGA7-1 Gene

Pathways & Interactions for TRS-AGA7-1 Gene

SuperPathways for TRS-AGA7-1 Gene

No Data Available

Interacting Proteins for TRS-AGA7-1 Gene

Gene Ontology (GO) - Biological Process for TRS-AGA7-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRS-AGA7-1 Gene

Transcripts for TRS-AGA7-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRS-AGA7-1 Gene

No ASD Table

Relevant External Links for TRS-AGA7-1 Gene

GeneLoc Exon Structure for
TRS-AGA7-1
ECgene alternative splicing isoforms for
TRS-AGA7-1

No data available for mRNA/cDNA for TRS-AGA7-1 Gene

Expression for TRS-AGA7-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRS-AGA7-1 Gene

Orthologs for TRS-AGA7-1 Gene

No data available for Orthologs and Evolution for TRS-AGA7-1 Gene

Paralogs for TRS-AGA7-1 Gene

No data available for Paralogs for TRS-AGA7-1 Gene

Variants for TRS-AGA7-1 Gene

Relevant External Links for TRS-AGA7-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRS-AGA7-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRS-AGA7-1 Gene

Disorders for TRS-AGA7-1 Gene

No disorders were found for TRS-AGA7-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRS-AGA7-1 Gene

Publications for TRS-AGA7-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRS-AGA7-1 Gene

Sources for TRS-AGA7-1 Gene

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