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Aliases for TRS-AGA5-1 Gene

Subcategory (RNA class) for TRS-AGA5-1 Gene


Quality Score for this RNA gene is


Aliases for TRS-AGA5-1 Gene

  • Transfer RNA-Ser (AGA) 5-1 2 3
  • Transfer RNA Serine 28 (Anticodon AGA) 2 3
  • TRNA-Ser-AGA-5-1 3
  • TRNAS28 3

External Ids for TRS-AGA5-1 Gene

ORGUL Members for TRS-AGA5-1 Gene

Previous HGNC Symbols for TRS-AGA5-1 Gene

  • TRNAS28

Summaries for TRS-AGA5-1 Gene

GeneCards Summary for TRS-AGA5-1 Gene

TRS-AGA5-1 (Transfer RNA-Ser (AGA) 5-1) is an RNA Gene, and is affiliated with the tRNA class.

fRNAdb sequence ontologies for TRS-AGA5-1 Gene

  • tRNA: Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position.

View fRNAdb secondary structures for TRS-AGA5-1

Additional gene information for TRS-AGA5-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRS-AGA5-1 Gene

Genomics for TRS-AGA5-1 Gene

GeneHancer (GH) Regulatory Elements for TRS-AGA5-1 Gene

Promoters and enhancers for TRS-AGA5-1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I149609 Enhancer 0.6 ENCODE 0.8 +2.4 2381 1.8 SMARCE1 CLOCK DPF2 MNT FOXA1 ZNF217 CTBP1 GATA3 RCOR1 FOS ZNF862 GC07M149614 TRC-GCA19-1 TRS-AGA5-1 ZNF767P GC07M149505
GH07I149598 Enhancer 1 Ensembl ENCODE 0.4 -8.1 -8054 2.7 HDGF PKNOX1 SMAD1 RB1 BMI1 BATF IRF4 RAD21 ZNF207 ATF7 ZNF746 ZNF767P LOC101928733 ZNF862 TRC-GCA20-1 TRS-AGA5-1 GC07M149505
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRS-AGA5-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRS-AGA5-1 Gene

Genomic Locations for TRS-AGA5-1 Gene
72 bases
Plus strand

Genomic View for TRS-AGA5-1 Gene

Genes around TRS-AGA5-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRS-AGA5-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRS-AGA5-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRS-AGA5-1 Gene

ORGUL Member Location for TRS-AGA5-1 Gene

ORGUL Member Location for TRS-AGA5-1 gene

Proteins for TRS-AGA5-1 Gene

Post-translational modifications for TRS-AGA5-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRS-AGA5-1 Gene

Domains & Families for TRS-AGA5-1 Gene

Gene Families for TRS-AGA5-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRS-AGA5-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRS-AGA5-1 Gene

Function for TRS-AGA5-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRS-AGA5-1 Gene

Localization for TRS-AGA5-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRS-AGA5-1 Gene

Pathways & Interactions for TRS-AGA5-1 Gene

SuperPathways for TRS-AGA5-1 Gene

No Data Available

Interacting Proteins for TRS-AGA5-1 Gene

Gene Ontology (GO) - Biological Process for TRS-AGA5-1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TRS-AGA5-1 Gene

Drugs & Compounds for TRS-AGA5-1 Gene

No Compound Related Data Available

Transcripts for TRS-AGA5-1 Gene

fRNAdb Secondary structures for TRS-AGA5-1 Gene

  • RF00005;tRNA;AC004932.4/113735-113806

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRS-AGA5-1 Gene

No ASD Table

Relevant External Links for TRS-AGA5-1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

No data available for mRNA/cDNA for TRS-AGA5-1 Gene

Expression for TRS-AGA5-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRS-AGA5-1 Gene

Orthologs for TRS-AGA5-1 Gene

No data available for Orthologs and Evolution for TRS-AGA5-1 Gene

Paralogs for TRS-AGA5-1 Gene

No data available for Paralogs for TRS-AGA5-1 Gene

Variants for TRS-AGA5-1 Gene

Additional Variant Information for TRS-AGA5-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRS-AGA5-1 Gene

Disorders for TRS-AGA5-1 Gene

No disorders were found for TRS-AGA5-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRS-AGA5-1 Gene

Publications for TRS-AGA5-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58
  2. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. (PMID: 9023104) Lowe TM … Eddy SR (Nucleic acids research 1997) 1
  3. The tertiary structure of tRNA and the development of the genetic code. (PMID: 8256282) Hou YM (Trends in biochemical sciences 1993) 1

Products for TRS-AGA5-1 Gene

Sources for TRS-AGA5-1 Gene

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