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Aliases for TRS-AGA5-1 Gene

Subcategory (RNA class) for TRS-AGA5-1 Gene

tRNA

Quality Score for this RNA gene is

4

Aliases for TRS-AGA5-1 Gene

  • Transfer RNA-Ser (AGA) 5-1 2 3
  • Transfer RNA Serine 28 (Anticodon AGA) 2 3
  • TRNA-Ser-AGA-5-1 3
  • TRNAS28 3

External Ids for TRS-AGA5-1 Gene

ORGUL Members for TRS-AGA5-1 Gene

Previous HGNC Symbols for TRS-AGA5-1 Gene

  • TRNAS28

Summaries for TRS-AGA5-1 Gene

GeneCards Summary for TRS-AGA5-1 Gene

TRS-AGA5-1 (Transfer RNA-Ser (AGA) 5-1) is an RNA Gene, and is affiliated with the tRNA class.

fRNAdb sequence ontologies for TRS-AGA5-1 Gene

  • tRNA: Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position.

View fRNAdb secondary structures for TRS-AGA5-1

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRS-AGA5-1 Gene

Genomics for TRS-AGA5-1 Gene

Regulatory Elements for TRS-AGA5-1 Gene

Enhancers for TRS-AGA5-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G149609 0.7 ENCODE 0.7 +2.4 2381 1.8 BCOR ZNF146 ZMYM3 MNT DPF2 ATF2 FOXA1 CTBP1 GATA3 ZNF580 ZNF862 TRS-AGA5-1 TRC-GCA19-1 GC07M149614
GH07G149598 1.1 Ensembl ENCODE 0.4 -8.1 -8055 2.7 HDGF PKNOX1 TBL1XR1 BMI1 RAD21 ZNF207 RELB ETV6 IKZF2 CREM ZNF746 ZNF767P LOC101928733 ZNF862 TRC-GCA20-1 TRS-AGA5-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRS-AGA5-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRS-AGA5-1 Gene

Chromosome:
7
Start:
149,608,376 bp from pter
End:
149,608,447 bp from pter
Size:
72 bases
Orientation:
Plus strand

Genomic View for TRS-AGA5-1 Gene

Genes around TRS-AGA5-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRS-AGA5-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRS-AGA5-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRS-AGA5-1 Gene

ORGUL Member Location for TRS-AGA5-1 Gene

ORGUL Member Location for TRS-AGA5-1 gene

Proteins for TRS-AGA5-1 Gene

Post-translational modifications for TRS-AGA5-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRS-AGA5-1 Gene

Domains & Families for TRS-AGA5-1 Gene

Gene Families for TRS-AGA5-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRS-AGA5-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRS-AGA5-1 Gene

Function for TRS-AGA5-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRS-AGA5-1 Gene

Localization for TRS-AGA5-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRS-AGA5-1 Gene

Pathways & Interactions for TRS-AGA5-1 Gene

SuperPathways for TRS-AGA5-1 Gene

No Data Available

Interacting Proteins for TRS-AGA5-1 Gene

Gene Ontology (GO) - Biological Process for TRS-AGA5-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRS-AGA5-1 Gene

Drugs & Compounds for TRS-AGA5-1 Gene

No Compound Related Data Available

Transcripts for TRS-AGA5-1 Gene

fRNAdb Secondary structures for TRS-AGA5-1 Gene

  • RF00005;tRNA;AC004932.4/113735-113806

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRS-AGA5-1 Gene

No ASD Table

Relevant External Links for TRS-AGA5-1 Gene

GeneLoc Exon Structure for
TRS-AGA5-1
ECgene alternative splicing isoforms for
TRS-AGA5-1

No data available for mRNA/cDNA for TRS-AGA5-1 Gene

Expression for TRS-AGA5-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRS-AGA5-1 Gene

Orthologs for TRS-AGA5-1 Gene

No data available for Orthologs and Evolution for TRS-AGA5-1 Gene

Paralogs for TRS-AGA5-1 Gene

No data available for Paralogs for TRS-AGA5-1 Gene

Variants for TRS-AGA5-1 Gene

Relevant External Links for TRS-AGA5-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRS-AGA5-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRS-AGA5-1 Gene

Disorders for TRS-AGA5-1 Gene

No disorders were found for TRS-AGA5-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRS-AGA5-1 Gene

Publications for TRS-AGA5-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64
  2. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. (PMID: 9023104) Lowe T.M. … Eddy S.R. (Nucleic Acids Res. 1997) 1
  3. The tertiary structure of tRNA and the development of the genetic code. (PMID: 8256282) Hou Y.M. (Trends Biochem. Sci. 1993) 1

Products for TRS-AGA5-1 Gene

Sources for TRS-AGA5-1 Gene

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