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Aliases for TRS-AGA2-5 Gene

Subcategory (RNA class) for TRS-AGA2-5 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRS-AGA2-5 Gene

  • Transfer RNA-Ser (AGA) 2-5 2 3
  • Transfer RNA Serine 20 (Anticodon AGA) 2 3
  • Transfer RNA-Ser (AGA) 2-6 2 3
  • TRNA-Ser-AGA-2-6 3
  • TRS-AGA2-6 3
  • TRNAS20 3

External Ids for TRS-AGA2-5 Gene

Previous HGNC Symbols for TRS-AGA2-5 Gene

  • TRNAS20
  • TRS-AGA2-6

Previous GeneCards Identifiers for TRS-AGA2-5 Gene

  • GC06P027504

Summaries for TRS-AGA2-5 Gene

GeneCards Summary for TRS-AGA2-5 Gene

TRS-AGA2-5 (Transfer RNA-Ser (AGA) 2-5) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRS-AGA2-5 Gene

Genomics for TRS-AGA2-5 Gene

Regulatory Elements for TRS-AGA2-5 Gene

Enhancers for TRS-AGA2-5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F095267 0.2 ENCODE 0.8 +0.2 191 3.4 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 INTS8 KIAA1429 C8orf37 MTERF3 TRS-AGA2-5 LINC01298
GH08F095248 1 Ensembl ENCODE 0.3 +20.9 20947 0.4 HDAC1 NFRKB ARID4B ZNF2 RAD21 SCRT2 ZNF654 ZBTB2 ZBTB11 REST C8orf37 PLEKHF2 INTS8 ENSG00000253878 TP53INP1 TRS-AGA2-5 LINC01298
GH08F095230 1.2 Ensembl ENCODE 0.3 +38.3 38339 1.0 MLLT1 RNU6-1209P PLEKHF2 C8orf37 LINC01298 TRS-AGA2-5
GH08F095232 0.5 Ensembl 0.3 +37.4 37438 0.2 RNU6-1209P PLEKHF2 LINC01298 TRS-AGA2-5
GH08F095233 0.2 Ensembl 0.3 +36.5 36538 1.2 HLF FOS RNU6-1209P PLEKHF2 C8orf37 LINC01298 TRS-AGA2-5
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRS-AGA2-5 on UCSC Golden Path with GeneCards custom track

Promoters for TRS-AGA2-5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001396705 238 2601 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1

Genomic Location for TRS-AGA2-5 Gene

Chromosome:
8
Start:
95,269,657 bp from pter
End:
95,269,738 bp from pter
Size:
82 bases
Orientation:
Minus strand

Genomic View for TRS-AGA2-5 Gene

Genes around TRS-AGA2-5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRS-AGA2-5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRS-AGA2-5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRS-AGA2-5 Gene

Proteins for TRS-AGA2-5 Gene

Post-translational modifications for TRS-AGA2-5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRS-AGA2-5 Gene

Domains & Families for TRS-AGA2-5 Gene

Gene Families for TRS-AGA2-5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRS-AGA2-5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRS-AGA2-5 Gene

Function for TRS-AGA2-5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRS-AGA2-5 Gene

Localization for TRS-AGA2-5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRS-AGA2-5 Gene

Pathways & Interactions for TRS-AGA2-5 Gene

SuperPathways for TRS-AGA2-5 Gene

No Data Available

Interacting Proteins for TRS-AGA2-5 Gene

Gene Ontology (GO) - Biological Process for TRS-AGA2-5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRS-AGA2-5 Gene

Transcripts for TRS-AGA2-5 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRS-AGA2-5 Gene

No ASD Table

Relevant External Links for TRS-AGA2-5 Gene

GeneLoc Exon Structure for
TRS-AGA2-5
ECgene alternative splicing isoforms for
TRS-AGA2-5

No data available for mRNA/cDNA for TRS-AGA2-5 Gene

Expression for TRS-AGA2-5 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRS-AGA2-5 Gene

Orthologs for TRS-AGA2-5 Gene

No data available for Orthologs and Evolution for TRS-AGA2-5 Gene

Paralogs for TRS-AGA2-5 Gene

No data available for Paralogs for TRS-AGA2-5 Gene

Variants for TRS-AGA2-5 Gene

Relevant External Links for TRS-AGA2-5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRS-AGA2-5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRS-AGA2-5 Gene

Disorders for TRS-AGA2-5 Gene

No disorders were found for TRS-AGA2-5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRS-AGA2-5 Gene

Publications for TRS-AGA2-5 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRS-AGA2-5 Gene

Sources for TRS-AGA2-5 Gene

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