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Aliases for TRR-TCT1-1 Gene

Subcategory (RNA class) for TRR-TCT1-1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRR-TCT1-1 Gene

  • Transfer RNA-Arg (TCT) 1-1 2 3
  • Transfer RNA Arginine 15 (Anticodon UCU) 2 3
  • RP4-561L24.3 5
  • TRNAR15 3

External Ids for TRR-TCT1-1 Gene

Previous HGNC Symbols for TRR-TCT1-1 Gene

  • TRNAR15

Summaries for TRR-TCT1-1 Gene

GeneCards Summary for TRR-TCT1-1 Gene

TRR-TCT1-1 (Transfer RNA-Arg (TCT) 1-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRR-TCT1-1 Gene

Genomics for TRR-TCT1-1 Gene

Regulatory Elements for TRR-TCT1-1 Gene

Enhancers for TRR-TCT1-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F093811 1 Ensembl ENCODE 18.9 -31.9 -31915 8.3 PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 ZNF48 ZNF2 ZNF143 DEK ENSG00000230439 SNORA66 CCDC18-AS1 SNORD21 RPL5 TRR-TCT1-1 DR1 BCAR3 MIR760 DNTTIP2
GH01F093819 0.6 Ensembl ENCODE 18.7 -25.7 -25692 3.3 ZNF146 ZFP64 TEAD4 ZNF781 ZNF101 NR2F2 JUND PRDM12 TRR-TCT1-1 BCAR3 MIR760 LOC100129046 GCLM ENSG00000230439 GC01M093831 GC01P093813
GH01F092972 1.2 FANTOM5 Ensembl ENCODE 14.7 -871.7 -871652 7.0 HDGF ATF1 PKNOX1 MLX ZFP64 ZNF2 ZNF121 GATA2 CBX5 ZNF143 TRR-TCT1-1 MTF2 RPL5 EVI5 KIAA1107 FAM69A CCDC18-AS1 RN7SL692P GC01P092987
GH01F093275 1.4 Ensembl ENCODE 12 -571.1 -571147 1.7 SOX13 DRAP1 TFAP4 ZNF792 SAP130 ARID4B CEBPG DMAP1 ZNF644 TEAD3 CCDC18-AS1 TRR-TCT1-1 CCDC18 TMED5 LOC100130531 ENSG00000225297
GH01F093698 1.2 FANTOM5 Ensembl ENCODE 10.3 -144.7 -144659 8.2 HDGF PKNOX1 WRNIP1 YY1 ZNF302 CBX5 ZNF143 ZNF207 FOS DEK TRR-TCT1-1 DNTTIP2 CCDC18-AS1 ENSG00000230439 DR1 FAM69A BCAR3 GCLM LOC102723480 GC01P093728
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRR-TCT1-1 on UCSC Golden Path with GeneCards custom track

Promoters for TRR-TCT1-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000540995 26 2801 PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for TRR-TCT1-1 Gene

Chromosome:
1
Start:
93,847,174 bp from pter
End:
93,848,939 bp from pter
Size:
1,766 bases
Orientation:
Plus strand

Genomic View for TRR-TCT1-1 Gene

Genes around TRR-TCT1-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRR-TCT1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRR-TCT1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRR-TCT1-1 Gene

Proteins for TRR-TCT1-1 Gene

Post-translational modifications for TRR-TCT1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRR-TCT1-1 Gene

Domains & Families for TRR-TCT1-1 Gene

Gene Families for TRR-TCT1-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRR-TCT1-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRR-TCT1-1 Gene

Function for TRR-TCT1-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRR-TCT1-1 Gene

Localization for TRR-TCT1-1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TRR-TCT1-1 Gene COMPARTMENTS Subcellular localization image for TRR-TCT1-1 gene
Compartment Confidence
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TRR-TCT1-1 Gene

Pathways & Interactions for TRR-TCT1-1 Gene

SuperPathways for TRR-TCT1-1 Gene

No Data Available

Interacting Proteins for TRR-TCT1-1 Gene

Gene Ontology (GO) - Biological Process for TRR-TCT1-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRR-TCT1-1 Gene

Transcripts for TRR-TCT1-1 Gene

mRNA/cDNA for TRR-TCT1-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRR-TCT1-1 Gene

No ASD Table

Relevant External Links for TRR-TCT1-1 Gene

GeneLoc Exon Structure for
TRR-TCT1-1
ECgene alternative splicing isoforms for
TRR-TCT1-1

Expression for TRR-TCT1-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRR-TCT1-1 Gene

genes like me logo Genes that share expression patterns with TRR-TCT1-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRR-TCT1-1 Gene

Orthologs for TRR-TCT1-1 Gene

Evolution for TRR-TCT1-1 Gene

ENSEMBL:
Gene Tree for TRR-TCT1-1 (if available)
TreeFam:
Gene Tree for TRR-TCT1-1 (if available)

No data available for Orthologs for TRR-TCT1-1 Gene

Paralogs for TRR-TCT1-1 Gene

No data available for Paralogs for TRR-TCT1-1 Gene

Variants for TRR-TCT1-1 Gene

Relevant External Links for TRR-TCT1-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRR-TCT1-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRR-TCT1-1 Gene

Disorders for TRR-TCT1-1 Gene

No disorders were found for TRR-TCT1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRR-TCT1-1 Gene

Publications for TRR-TCT1-1 Gene

No publications were found for TRR-TCT1-1 Gene.

Products for TRR-TCT1-1 Gene

Sources for TRR-TCT1-1 Gene

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