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Aliases for TRPV3 Gene

Aliases for TRPV3 Gene

  • Transient Receptor Potential Cation Channel, Subfamily V, Member 3 2 3
  • Vanilloid Receptor-Like 3 3 4
  • VRL-3 3 4
  • OLMS 3 6
  • Transient Receptor Potential Cation Channel Subfamily V Member 3 3
  • Vanilloid Receptor-Related Osmotically Activated Channel Protein 3
  • TrpV3 4
  • VRL3 3

External Ids for TRPV3 Gene

Summaries for TRPV3 Gene

Entrez Gene Summary for TRPV3 Gene

  • This gene product belongs to a family of nonselective cation channels that function in a variety of processes, including temperature sensation and vasoregulation. The thermosensitive members of this family are expressed in subsets of sensory neurons that terminate in the skin, and are activated at distinct physiological temperatures. This channel is activated at temperatures between 22 and 40 degrees C. This gene lies in close proximity to another family member gene on chromosome 17, and the two encoded proteins are thought to associate with each other to form heteromeric channels. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2012]

GeneCards Summary for TRPV3 Gene

TRPV3 (Transient Receptor Potential Cation Channel, Subfamily V, Member 3) is a Protein Coding gene. Diseases associated with TRPV3 include olmsted syndrome and dentin sensitivity. Among its related pathways are CREB Pathway and Ion channel transport. GO annotations related to this gene include calcium channel activity. An important paralog of this gene is TRPV2.

UniProtKB/Swiss-Prot for TRPV3 Gene

  • Putative receptor-activated non-selective calcium permeant cation channel. It is activated by innocuous (warm) temperatures and shows an increased response at noxious temperatures greater than 39 degrees Celsius. Activation exhibits an outward rectification. May associate with TRPV1 and may modulate its activity. Is a negative regulator of hair growth and cycling: TRPV3-coupled signaling suppresses keratinocyte proliferation in hair follicles and induces apoptosis and premature hair follicle regression (catagen).

Tocris Summary for TRPV3 Gene

  • Vanilloids are a group of compounds, structurally related to capsaicin, thought to exert their actions via vanilloid receptors. The vanilloid receptor family (TRPV) is a subgroup of the transient receptor potential (TRP) superfamily of ion channels, and six members (TRPV1-6) have so far been identified. The six vanilloid receptor members have been divided into four groups on the basis of structure and function: TRPV1/2, TRPV3, TRPV4 and TRPV5/6. TRPV1-4 are thermosensitive, non-selective cation channels that exist as tetrameric complexes. They are activated by a range of stimuli including heat, protons, lipids and changes in osmolarity or pressure. TRPV5-6 are calcium selective channels that are involved in the absorption and reabsorption of calcium across intestinal and renal epithelia. It has been proposed that cannabinoids are endogenous ligands for vanilloid receptors. Furthermore, adenosine has been shown to be an endogenous TRPV1 ligand and TRPV4 is activated by anandamide and arachidonic acid.

Gene Wiki entry for TRPV3 Gene

No data available for PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRPV3 Gene

Genomics for TRPV3 Gene

Genomic Location for TRPV3 Gene

Start:
3,510,502 bp from pter
End:
3,557,995 bp from pter
Size:
47,494 bases
Orientation:
Minus strand

Genomic View for TRPV3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRPV3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRPV3 Gene

Regulatory Elements for TRPV3 Gene

Proteins for TRPV3 Gene

  • Protein details for TRPV3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NET8-TRPV3_HUMAN
    Recommended name:
    Transient receptor potential cation channel subfamily V member 3
    Protein Accession:
    Q8NET8
    Secondary Accessions:
    • Q8NDW7
    • Q8NET9
    • Q8NFH2

    Protein attributes for TRPV3 Gene

    Size:
    790 amino acids
    Molecular mass:
    90636 Da
    Quaternary structure:
    • May form a heteromeric channel with TRPV1. Interacts with TRPV1.

    Alternative splice isoforms for TRPV3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TRPV3 Gene

Proteomics data for TRPV3 Gene at MOPED

Post-translational modifications for TRPV3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TRPV3 Gene

No data available for DME Specific Peptides for TRPV3 Gene

Domains for TRPV3 Gene

Gene Families for TRPV3 Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing
  • TRP :Voltage-gated ion channels / Transient receptor potential cation channels
IUPHAR :

Protein Domains for TRPV3 Gene

UniProtKB/Swiss-Prot:

TRPV3_HUMAN
Family:
  • Belongs to the transient receptor (TC 1.A.4) family. TrpV subfamily. TRPV3 sub-subfamily.:
    • Q8NET8
Similarity:
  • Contains 3 ANK repeats.:
    • Q8NET8
genes like me logo Genes that share domains with TRPV3: view

Function for TRPV3 Gene

Molecular function for TRPV3 Gene

UniProtKB/Swiss-Prot Function: Putative receptor-activated non-selective calcium permeant cation channel. It is activated by innocuous (warm) temperatures and shows an increased response at noxious temperatures greater than 39 degrees Celsius. Activation exhibits an outward rectification. May associate with TRPV1 and may modulate its activity. Is a negative regulator of hair growth and cycling: TRPV3-coupled signaling suppresses keratinocyte proliferation in hair follicles and induces apoptosis and premature hair follicle regression (catagen).

Gene Ontology (GO) - Molecular Function for TRPV3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005216 ion channel activity --
GO:0005261 cation channel activity --
GO:0005262 calcium channel activity IEA --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with TRPV3: view
genes like me logo Genes that share phenotypes with TRPV3: view

Animal Models for TRPV3 Gene

MGI Knock Outs for TRPV3:

miRNA for TRPV3 Gene

miRTarBase miRNAs that target TRPV3

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for TRPV3 Gene

Localization for TRPV3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TRPV3 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TRPV3 Gene COMPARTMENTS Subcellular localization image for TRPV3 gene
Compartment Confidence
plasma membrane 3
extracellular 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for TRPV3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane --
GO:0016021 integral component of membrane IEA --
GO:0043235 receptor complex IDA 23382219
genes like me logo Genes that share ontologies with TRPV3: view

Pathways for TRPV3 Gene

genes like me logo Genes that share pathways with TRPV3: view

Pathways by source for TRPV3 Gene

1 Qiagen pathway for TRPV3 Gene
2 Cell Signaling Technology pathways for TRPV3 Gene

Interacting Proteins for TRPV3 Gene

Gene Ontology (GO) - Biological Process for TRPV3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0009266 response to temperature stimulus --
GO:0009408 response to heat IEA --
GO:0034220 ion transmembrane transport TAS --
GO:0042636 negative regulation of hair cycle IMP 21593771
GO:0055085 transmembrane transport TAS --
genes like me logo Genes that share ontologies with TRPV3: view

Compounds for TRPV3 Gene

(5) Tocris Compounds for TRPV3 Gene

Compound Action Cas Number
5-Iodoresiniferatoxin Potent, silent TRPV1 antagonist [535974-91-5]
AMG 9810 Potent and selective, competitive antagonist of TRPV1 [545395-94-6]
Anandamide Endogenous CB receptor agonist [94421-68-8]
Capsazepine Vanilloid receptor antagonist. Also activator of ENaCdelta [138977-28-3]
HC 067047 Potent and selective TRPV4 antagonist [883031-03-6]

(2) HMDB Compounds for TRPV3 Gene

Compound Synonyms Cas Number PubMed IDs
Calcium
  • Ca
7440-70-2
Menthol
  • (-)-(1R,3R,4S)-Menthol
2216-51-5

(1) Drugbank Compounds for TRPV3 Gene

Compound Synonyms Cas Number Type Actions PubMed IDs
Menthol
  • (-)-menthol
2216-51-5 target inducer

(11) IUPHAR Ligand for TRPV3 Gene

Ligand Type Action Affinity Pubmed IDs
menthol Activator None 4.6
6-tert-butyl-m-cresol Activator None
diphenyltetrahydrofuran Channel blocker None
carvacrol Activator None
camphor Activator None
thymol Activator Activation
eugenol Activator None
incensole acetate Activator None
ruthenium red Channel blocker None
diphenylboronic anhydride Activator None
2-APB Channel blocker None
genes like me logo Genes that share compounds with TRPV3: view

Transcripts for TRPV3 Gene

Unigene Clusters for TRPV3 Gene

Transient receptor potential cation channel, subfamily V, member 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TRPV3 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b ^ 10 ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14 ^ 15 ^ 16 ^ 17a · 17b ^ 18a · 18b · 18c
SP1: - -
SP2: - -
SP3: -
SP4: - - -
SP5:

Relevant External Links for TRPV3 Gene

GeneLoc Exon Structure for
TRPV3
ECgene alternative splicing isoforms for
TRPV3

Expression for TRPV3 Gene

mRNA expression in normal human tissues for TRPV3 Gene

mRNA differential expression in normal tissues according to GTEx for TRPV3 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (7.2) and Skin - Sun Exposed (Lower leg) (6.5).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for TRPV3 Gene

SOURCE GeneReport for Unigene cluster for TRPV3 Gene Hs.446255

mRNA Expression by UniProt/SwissProt for TRPV3 Gene

Q8NET8-TRPV3_HUMAN
Tissue specificity: Abundantly expressed in CNS. Widely expressed at low levels. Detected in dorsal root ganglion (at protein level). Expressed in the keratinocyte layers of the outer root sheath and, to lesser extent, to the matrix of the hair follicles (at protein level).
genes like me logo Genes that share expressions with TRPV3: view

Orthologs for TRPV3 Gene

This gene was present in the common ancestor of animals.

Orthologs for TRPV3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRPV3 36
  • 98.77 (n)
  • 98.55 (a)
TRPV3 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TRPV3 37
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TRPV3 36
  • 90.93 (n)
  • 94.05 (a)
TRPV3 37
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Trpv3 36
  • 88.14 (n)
  • 93.16 (a)
Trpv3 16
Trpv3 37
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TRPV3 37
  • 40 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TRPV3 37
  • 85 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Trpv3 36
  • 88.06 (n)
  • 93.29 (a)
chicken
(Gallus gallus)
Aves TRPV3 36
  • 67.82 (n)
  • 72.47 (a)
TRPV3 37
  • 72 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TRPV3 37
  • 71 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia trpv3 36
  • 61.21 (n)
  • 62.65 (a)
fruit fly
(Drosophila melanogaster)
Insecta iav 37
  • 13 (a)
ManyToMany
nan 37
  • 18 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea ocr-1 37
  • 17 (a)
ManyToMany
ocr-2 37
  • 17 (a)
ManyToMany
ocr-3 37
  • 17 (a)
ManyToMany
ocr-4 37
  • 20 (a)
ManyToMany
osm-9 37
  • 15 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 24 (a)
ManyToMany
-- 37
  • 20 (a)
ManyToMany
Species with no ortholog for TRPV3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for TRPV3 Gene

ENSEMBL:
Gene Tree for TRPV3 (if available)
TreeFam:
Gene Tree for TRPV3 (if available)

Paralogs for TRPV3 Gene

Paralogs for TRPV3 Gene

Selected SIMAP similar genes for TRPV3 Gene using alignment to 8 proteins:

genes like me logo Genes that share paralogs with TRPV3: view

Variants for TRPV3 Gene

Sequence variations from dbSNP and Humsavar for TRPV3 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs101476 -- 3,533,385(+) TCCTT(C/T)AAGTC intron-variant
rs167737 -- 3,541,219(-) GGCTA(A/T)TTTTT intron-variant
rs167738 -- 3,553,611(-) GACTT(C/T)CTGGA intron-variant
rs322935 -- 3,544,280(-) CCTGT(A/C)ATCCC intron-variant
rs322936 -- 3,543,836(+) ACCTA(C/T)ATTTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRPV3 Gene

Variant ID Type Subtype PubMed ID
esv2660206 CNV Deletion 23128226
nsv907553 CNV Loss 21882294
nsv833341 CNV Loss 17160897
nsv526538 CNV Loss 19592680
esv2665707 CNV Deletion 23128226
nsv527923 CNV Loss 19592680
nsv526175 CNV Gain 19592680
dgv3042n71 CNV Loss 21882294
esv1041981 CNV Insertion 17803354
nsv907565 CNV Loss 21882294
nsv516676 CNV Gain+Loss 19592680

Relevant External Links for TRPV3 Gene

HapMap Linkage Disequilibrium report
TRPV3
Human Gene Mutation Database (HGMD)
TRPV3

Disorders for TRPV3 Gene

(1) OMIM Diseases for TRPV3 Gene (607066)

UniProtKB/Swiss-Prot

TRPV3_HUMAN
  • Olmsted syndrome (OLMS) [MIM:614594]: A rare congenital disorder characterized by bilateral mutilating palmoplantar keratoderma and periorificial keratotic plaques with severe itching at all lesions. Diffuse alopecia, constriction of digits, and onychodystrophy have also been reported. Infections and squamous cell carcinomas can arise on the keratotic areas. The digital constriction may progress to autoamputation of fingers and toes. {ECO:0000269 PubMed:22405088, ECO:0000269 PubMed:22835024}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(1) University of Copenhagen DISEASES for TRPV3 Gene

genes like me logo Genes that share disorders with TRPV3: view

Publications for TRPV3 Gene

  1. TRPV3 is a temperature-sensitive vanilloid receptor-like protein. (PMID: 12077606) Smith G.D. … Davis J.B. (Nature 2002) 2 3 4
  2. Activation of transient receptor potential vanilloid-3 inhibits human hair growth. (PMID: 21593771) Borbiro I. … Biro T. (J. Invest. Dermatol. 2011) 3 4
  3. Exome sequencing reveals mutations in TRPV3 as a cause of Olmsted syndrome. (PMID: 22405088) Lin Z. … Yang Y. (Am. J. Hum. Genet. 2012) 3 4
  4. Quantitative Real-Time PCR detection of TRPV1-4 gene expression in human leukocytes from healthy and hyposensitive subjects. (PMID: 18983665) Spinsanti G. … Aloisi A.M. (Mol Pain 2008) 3 23
  5. Differential regulation of TRPV1, TRPV3, and TRPV4 sensitivity through a conserved binding site on the ankyrin repeat domain. (PMID: 19864432) Phelps C.B. … Gaudet R. (J. Biol. Chem. 2010) 3 23

Products for TRPV3 Gene

Sources for TRPV3 Gene

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