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Aliases for TRPM3 Gene

Aliases for TRPM3 Gene

  • Transient Receptor Potential Cation Channel, Subfamily M, Member 3 2 3
  • LTRPC3 3 4 6
  • MLSN2 3 4 6
  • Long Transient Receptor Potential Channel 3 3 4
  • Melastatin 2 2 3
  • Melastatin-2 3 4
  • KIAA1616 4 6
  • LTrpC-3 3 4
  • Transient Receptor Potential Cation Channel Subfamily M Member 3 3
  • EC 5.99.1.3 64
  • EC 2.3.1.31 64
  • GON-2 3

External Ids for TRPM3 Gene

Summaries for TRPM3 Gene

Entrez Gene Summary for TRPM3 Gene

  • The product of this gene belongs to the family of transient receptor potential (TRP) channels. TRP channels are cation-selective channels important for cellular calcium signaling and homeostasis. The protein encoded by this gene mediates calcium entry, and this entry is potentiated by calcium store depletion. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]

GeneCards Summary for TRPM3 Gene

TRPM3 (Transient Receptor Potential Cation Channel, Subfamily M, Member 3) is a Protein Coding gene. Diseases associated with TRPM3 include dentin sensitivity. Among its related pathways are CREB Pathway and Ion channel transport. GO annotations related to this gene include calcium channel activity and cation channel activity. An important paralog of this gene is TRPM1.

UniProtKB/Swiss-Prot for TRPM3 Gene

  • Calcium channel mediating constitutive calcium ion entry. Its activity is increased by reduction in extracellular osmolarity, by store depletion and muscarinic receptor activation.

Gene Wiki entry for TRPM3 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRPM3 Gene

Genomics for TRPM3 Gene

Genomic Location for TRPM3 Gene

Start:
70,529,063 bp from pter
End:
71,446,904 bp from pter
Size:
917,842 bases
Orientation:
Minus strand

Genomic View for TRPM3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRPM3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRPM3 Gene

Regulatory Elements for TRPM3 Gene

Proteins for TRPM3 Gene

  • Protein details for TRPM3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9HCF6-TRPM3_HUMAN
    Recommended name:
    Transient receptor potential cation channel subfamily M member 3
    Protein Accession:
    Q9HCF6
    Secondary Accessions:
    • A2A3F6
    • A9Z1Y7
    • Q5VW02
    • Q5VW03
    • Q5VW04
    • Q5W5T7
    • Q86SH0
    • Q86SH6
    • Q86UL0
    • Q86WK1
    • Q86WK2
    • Q86WK3
    • Q86WK4
    • Q86YZ9
    • Q86Z00
    • Q86Z01
    • Q9H0X2

    Protein attributes for TRPM3 Gene

    Size:
    1732 amino acids
    Molecular mass:
    197571 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAB66480.2; Type=Miscellaneous discrepancy; Note=Cloning artifact in C-terminus.; Evidence={ECO:0000305}; Sequence=CAM13096.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAM13169.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAM15782.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAM17596.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAM22746.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for TRPM3 Gene

neXtProt entry for TRPM3 Gene

Proteomics data for TRPM3 Gene at MOPED

Selected DME Specific Peptides for TRPM3 Gene

Post-translational modifications for TRPM3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Domains for TRPM3 Gene

Gene Families for TRPM3 Gene

HGNC:
  • TRP :Voltage-gated ion channels / Transient receptor potential cation channels
IUPHAR :

Protein Domains for TRPM3 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

TRPM3_HUMAN
Family:
  • Belongs to the transient receptor (TC 1.A.4) family. LTrpC subfamily. TRPM3 sub-subfamily.:
    • Q9HCF6
genes like me logo Genes that share domains with TRPM3: view

Function for TRPM3 Gene

Molecular function for TRPM3 Gene

UniProtKB/Swiss-Prot Function: Calcium channel mediating constitutive calcium ion entry. Its activity is increased by reduction in extracellular osmolarity, by store depletion and muscarinic receptor activation.

Enzyme Numbers (IUBMB) for TRPM3 Gene

Gene Ontology (GO) - Molecular Function for TRPM3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005216 ion channel activity --
GO:0005227 calcium activated cation channel activity IEA --
GO:0005261 cation channel activity IDA 15824111
GO:0005262 calcium channel activity IEA --
genes like me logo Genes that share ontologies with TRPM3: view
genes like me logo Genes that share phenotypes with TRPM3: view

Animal Models for TRPM3 Gene

MGI Knock Outs for TRPM3:

No data available for miRNA , Transcription Factor Targeting and HOMER Transcription for TRPM3 Gene

Localization for TRPM3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TRPM3 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TRPM3 Gene COMPARTMENTS Subcellular localization image for TRPM3 gene
Compartment Confidence
plasma membrane 3
endoplasmic reticulum 1
extracellular 1

Gene Ontology (GO) - Cellular Components for TRPM3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TRPM3: view

Pathways for TRPM3 Gene

genes like me logo Genes that share pathways with TRPM3: view

Pathways by source for TRPM3 Gene

Interacting Proteins for TRPM3 Gene

Selected Interacting proteins: Q9HCF6-TRPM3_HUMAN for TRPM3 Gene via I2D

Symbol External ID(s) Details
PLEKHA6

Gene Ontology (GO) - Biological Process for TRPM3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006811 ion transport --
GO:0006812 cation transport IDA 15824111
GO:0007216 G-protein coupled glutamate receptor signaling pathway --
GO:0016048 detection of temperature stimulus IEA --
GO:0034220 ion transmembrane transport TAS --
genes like me logo Genes that share ontologies with TRPM3: view

Compounds for TRPM3 Gene

(1) HMDB Compounds for TRPM3 Gene

Compound Synonyms Cas Number PubMed IDs
Calcium
  • Ca
7440-70-2

(15) IUPHAR Ligand for TRPM3 Gene

Ligand Type Action Affinity Pubmed IDs
Na+ Channel blocker None
pioglitazone Channel blocker None
dihydro-D-erythrosphingosine Activator None
pregnenolone sulphate Activator None
NN-dimethyl-D-erythrosphingosine Activator Agonist
mefenamic acid Channel blocker None
Gd3+ Channel blocker None
troglitazone Channel blocker None
rosiglitazone Channel blocker None
nifedipine Activator None
La3+ Channel blocker None
Mg2+ Antagonist Antagonist
2-APB Channel blocker None
D-erythrosphingosine Activator None
epipregnanolone sulphate Activator None

(1) Novoseek inferred chemical compound relationships for TRPM3 Gene

Compound -log(P) Hits PubMed IDs
calcium 37.4 2
genes like me logo Genes that share compounds with TRPM3: view

Transcripts for TRPM3 Gene

Unigene Clusters for TRPM3 Gene

Transient receptor potential cation channel, subfamily M, member 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TRPM3 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^
SP1: - - - - - - - - -
SP2: - - - - - - - - -
SP3: - - - - -
SP4: - - - - - -
SP5: - - - - - -
SP6: - - - - - -
SP7: - - - - - - - -
SP8: - - - - - - -
SP9: - - - -
SP10: -
SP11: - -
SP12: -
SP13: - -

ExUns: 22 ^ 23 ^ 24 ^ 25 ^ 26a · 26b ^ 27 ^ 28 ^ 29 ^ 30a · 30b ^ 31a · 31b
SP1: - -
SP2: -
SP3: -
SP4: -
SP5: -
SP6:
SP7: -
SP8: -
SP9:
SP10:
SP11:
SP12:
SP13:

Relevant External Links for TRPM3 Gene

GeneLoc Exon Structure for
TRPM3
ECgene alternative splicing isoforms for
TRPM3

Expression for TRPM3 Gene

mRNA expression in normal human tissues for TRPM3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TRPM3 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (6.4) and Brain - Cerebellum (5.9).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for TRPM3 Gene

SOURCE GeneReport for Unigene cluster for TRPM3 Gene Hs.47288

mRNA Expression by UniProt/SwissProt for TRPM3 Gene

Q9HCF6-TRPM3_HUMAN
Tissue specificity: Expressed primarily in the kidney and, at lower levels, in brain, testis, ovary, pancreas and spinal cord. Expression in the brain and kidney was determined at protein level. In the kidney, expressed predominantly in the collecting tubular epithelium in the medulla, medullary rays, and periglomerular regions; in the brain, highest levels are found in the cerebellum, choroid plexus, the locus coeruleus, the posterior thalamus and the substantia nigra. Down-regulated in renal tumors compared to normal kidney.
genes like me logo Genes that share expressions with TRPM3: view

Orthologs for TRPM3 Gene

This gene was present in the common ancestor of animals.

Orthologs for TRPM3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRPM3 36
  • 99.72 (n)
  • 99.94 (a)
TRPM3 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TRPM3 37
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TRPM3 36
  • 93.18 (n)
  • 98.01 (a)
TRPM3 37
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Trpm3 36
  • 91.5 (n)
  • 97.88 (a)
Trpm3 16
Trpm3 37
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TRPM3 37
  • 97 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TRPM3 37
  • 91 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Trpm3 36
  • 91.69 (n)
  • 98.3 (a)
chicken
(Gallus gallus)
Aves TRPM3 36
  • 81.53 (n)
  • 91.56 (a)
TRPM3 37
  • 92 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TRPM3 37
  • 89 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia trpm3 36
  • 76.68 (n)
  • 87.02 (a)
zebrafish
(Danio rerio)
Actinopterygii trpm3 36
  • 72.94 (n)
  • 81.12 (a)
trpm3 37
  • 76 (a)
ManyToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006825 36
  • 56.87 (n)
  • 53.21 (a)
fruit fly
(Drosophila melanogaster)
Insecta trpm 36
  • 56.63 (n)
  • 51.72 (a)
Species with no ortholog for TRPM3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TRPM3 Gene

ENSEMBL:
Gene Tree for TRPM3 (if available)
TreeFam:
Gene Tree for TRPM3 (if available)

Paralogs for TRPM3 Gene

Paralogs for TRPM3 Gene

genes like me logo Genes that share paralogs with TRPM3: view

Variants for TRPM3 Gene

Sequence variations from dbSNP and Humsavar for TRPM3 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs473392 -- 71,081,917(+) AATTA(C/T)AAGTA intron-variant
rs477084 -- 71,075,752(+) ATTCC(A/C)ATTTA intron-variant
rs478778 -- 71,087,684(-) TTCTT(C/T)CTTTC intron-variant
rs483291 -- 71,057,463(-) CTAGC(A/G)TCAAG intron-variant
rs484327 -- 71,126,840(+) TTTTT(C/G)AGACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRPM3 Gene

Variant ID Type Subtype PubMed ID
nsv428219 CNV Loss 18775914
nsv831616 CNV Gain 17160897
esv269394 CNV Insertion 20981092
nsv893440 CNV Gain 21882294
esv268448 CNV Insertion 20981092
nsv510944 CNV Complex 20534489
nsv6556 CNV Loss 18451855
esv999856 CNV Deletion 20482838
nsv499504 CNV Loss 21111241
nsv508551 CNV Loss 20534489
esv8273 CNV Gain 19470904
esv272430 CNV Insertion 20981092
esv270857 CNV Insertion 20981092
esv22135 CNV Loss 19812545
esv2572392 CNV Deletion 19546169
esv1931744 CNV Deletion 18987734
esv2738542 CNV Deletion 23290073
esv1692487 CNV Deletion 17803354
esv7523 CNV Loss 19470904
nsv521565 CNV Loss 19592680
nsv6557 CNV Insertion 18451855
nsv893441 CNV Gain 21882294
dgv72n64 CNV Loss 17921354
esv2659014 CNV Deletion 23128226
nsv442152 CNV CNV 18776908
nsv516833 CNV Loss 19592680
esv2540002 CNV Insertion 19546169
esv269578 CNV Insertion 20981092
esv273560 CNV Insertion 20981092
nsv6558 CNV Loss 18451855
esv1341286 CNV Insertion 17803354
esv26755 CNV Loss 19812545
esv1118924 CNV Deletion 17803354

Relevant External Links for TRPM3 Gene

HapMap Linkage Disequilibrium report
TRPM3
Human Gene Mutation Database (HGMD)
TRPM3

Disorders for TRPM3 Gene

(1) MalaCards Diseases for TRPM3 Gene

Search for TRPM3 Gene in MalaCards »

(1) University of Copenhagen DISEASES for TRPM3 Gene

Relevant External Links for TRPM3

Genetic Association Database (GAD)
TRPM3
Human Genome Epidemiology (HuGE) Navigator
TRPM3
genes like me logo Genes that share disorders with TRPM3: view

No data available for UniProtKB/Swiss-Prot for TRPM3 Gene

Publications for TRPM3 Gene

  1. Expression and characterization of human transient receptor potential melastatin 3 (hTRPM3). (PMID: 12672827) Lee N. … Blanar M.A. (J. Biol. Chem. 2003) 3 4 23
  2. TRP channels activated by extracellular hypo-osmoticity in epithelia. (PMID: 17233610) Harteneck C. … Reiter B. (Biochem. Soc. Trans. 2007) 3 23
  3. Prediction of the coding sequences of unidentified human genes. XVIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10997877) Nagase T. … Ohara O. (DNA Res. 2000) 3 4
  4. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4
  5. Pregnenolone sulphate- and cholesterol-regulated TRPM3 channels coupled to vascular smooth muscle secretion and contraction. (PMID: 20360246) Naylor J. … Beech D.J. (Circ. Res. 2010) 3 23

Products for TRPM3 Gene

Sources for TRPM3 Gene

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