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Aliases for TRPC5OS Gene

Aliases for TRPC5OS Gene

  • TRPC5 Opposite Strand 2 3
  • TRPC5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • TRPC5 Opposite Strand Protein 3 4
  • TRPC5-Antisense RNA 1 3 4
  • TRPC5-AS1 3 4
  • Putative Uncharacterized Protein TRPC5OS 3

External Ids for TRPC5OS Gene

Previous Symbols for TRPC5OS Gene

  • TRPC5-AS1

Summaries for TRPC5OS Gene

Entrez Gene Summary for TRPC5OS Gene

  • DISCONTINUED: There is no evidence to support this locus.

GeneCards Summary for TRPC5OS Gene

TRPC5OS (TRPC5 Opposite Strand) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRPC5OS Gene

Genomics for TRPC5OS Gene

Genomic Location for TRPC5OS Gene

Start:
111,876,051 bp from pter
End:
111,903,990 bp from pter
Size:
27,940 bases
Orientation:
Plus strand

Genomic View for TRPC5OS Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRPC5OS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRPC5OS Gene

No data available for Regulatory Elements for TRPC5OS Gene

Proteins for TRPC5OS Gene

  • Protein details for TRPC5OS Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NMA1-TR5OS_HUMAN
    Recommended name:
    Putative uncharacterized protein TRPC5OS
    Protein Accession:
    A6NMA1
    Secondary Accessions:

    Protein attributes for TRPC5OS Gene

    Size:
    111 amino acids
    Molecular mass:
    12326 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRPC5OS Gene

Proteomics data for TRPC5OS Gene at MOPED

Post-translational modifications for TRPC5OS Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TRPC5OS Gene

No data available for DME Specific Peptides for TRPC5OS Gene

Domains for TRPC5OS Gene

Protein Domains for TRPC5OS Gene

ProtoNet:
genes like me logo Genes that share domains with TRPC5OS: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TRPC5OS Gene

Function for TRPC5OS Gene

miRNA for TRPC5OS Gene

miRTarBase miRNAs that target TRPC5OS

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for TRPC5OS Gene

Localization for TRPC5OS Gene

No data available for Gene Ontology (GO) - Cellular Components for TRPC5OS Gene

Pathways for TRPC5OS Gene

SuperPathways for TRPC5OS Gene

No Data Available

Interacting Proteins for TRPC5OS Gene

Gene Ontology (GO) - Biological Process for TRPC5OS Gene

None

No data available for Pathways by source for TRPC5OS Gene

Transcripts for TRPC5OS Gene

mRNA/cDNA for TRPC5OS Gene

(4) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TRPC5OS Gene

TRPC5 opposite strand:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TRPC5OS Gene

No ASD Table

Relevant External Links for TRPC5OS Gene

GeneLoc Exon Structure for
TRPC5OS
ECgene alternative splicing isoforms for
TRPC5OS

Expression for TRPC5OS Gene

mRNA expression in normal human tissues for TRPC5OS Gene

mRNA differential expression in normal tissues according to GTEx for TRPC5OS Gene

This gene is overexpressed in Testis (45.5).

SOURCE GeneReport for Unigene cluster for TRPC5OS Gene Hs.247868

genes like me logo Genes that share expressions with TRPC5OS: view

Orthologs for TRPC5OS Gene

This gene was present in the common ancestor of mammals.

Orthologs for TRPC5OS Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRPC5OS 36
  • 100 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia TRPC5OS 36
  • 74.77 (n)
  • 61.68 (a)
dog
(Canis familiaris)
Mammalia TRPC5OS 36
  • 81 (n)
  • 70.09 (a)
mouse
(Mus musculus)
Mammalia Gm15070 36
  • 73.58 (n)
  • 61.32 (a)
Gm15070 16
rat
(Rattus norvegicus)
Mammalia LOC100909489 36
  • 74.53 (n)
  • 63.21 (a)
Species with no ortholog for TRPC5OS:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRPC5OS Gene

ENSEMBL:
Gene Tree for TRPC5OS (if available)
TreeFam:
Gene Tree for TRPC5OS (if available)

Paralogs for TRPC5OS Gene

No data available for Paralogs for TRPC5OS Gene

Variants for TRPC5OS Gene

Relevant External Links for TRPC5OS Gene

HapMap Linkage Disequilibrium report
TRPC5OS

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for TRPC5OS Gene

Disorders for TRPC5OS Gene

No disorders were found for TRPC5OS Gene.

No data available for UniProtKB/Swiss-Prot for TRPC5OS Gene

Publications for TRPC5OS Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  4. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for TRPC5OS Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TRPC5OS
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TRPC5OS
    • Block miRNA regulation of TRPC5OS using miScript Target Protectors

    Sources for TRPC5OS Gene

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