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Aliases for TRP-TGG5-1 Gene

Subcategory (RNA class) for TRP-TGG5-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRP-TGG5-1 Gene

  • Transfer RNA-Pro (TGG) 5-1 2 3
  • Transfer RNA Proline 27 (Anticodon UGG) Pseudogene 2 3
  • TRNA-Pro-TGG-5-1 3
  • TRNAP27P 3

External Ids for TRP-TGG5-1 Gene

Previous HGNC Symbols for TRP-TGG5-1 Gene

  • TRNAP27P

Summaries for TRP-TGG5-1 Gene

GeneCards Summary for TRP-TGG5-1 Gene

TRP-TGG5-1 (Transfer RNA-Pro (TGG) 5-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRP-TGG5-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRP-TGG5-1 Gene

Genomics for TRP-TGG5-1 Gene

Regulatory Elements for TRP-TGG5-1 Gene

Enhancers for TRP-TGG5-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H207004 1.5 Ensembl ENCODE dbSUPER 0.7 -2.9 -2919 7 HDGF PKNOX1 ARNT ARID4B SIN3A BRCA1 ZNF2 ZNF766 GATA2 ZNF143 PIGR FCMR FCAMR IL24 IL20 PFKFB2 MAPKAPK2 IL19 C4BPB TRP-TGG5-1
GH01H207001 1.2 Ensembl ENCODE dbSUPER 0.7 +2.2 2218 2 MAX RFX5 GATA3 POLR2A SMARCC2 RCOR1 PRDM10 DEK TCF7L2 SMARCC1 C4BPB TRP-TGG5-1 FCAMR
GH01H207000 0.7 ENCODE dbSUPER 0.7 +3.8 3842 0 SREBF1 TCF12 PKNOX1 TRP-TGG5-1 FCAMR
GH01H206966 1.4 Ensembl ENCODE dbSUPER 0.3 +34.0 34028 7 HDAC1 BATF RAD21 YY1 ETV6 ATF7 RUNX3 IKZF2 SMARCA5 JUNB PIGR FCMR IL20 IL24 IL10 IL19 MAPKAPK2 ENSG00000271680 C1orf116 FCAMR
GH01H206992 0.8 ENCODE dbSUPER 0.4 +12.0 11969 1 HNF1A HMBOX1 ZBTB33 TEAD3 FCAMR PIGR IL20 C1orf116 C4BPA ENSG00000271680 TRP-TGG5-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRP-TGG5-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRP-TGG5-1 Gene

Chromosome:
1
Start:
207,004,809 bp from pter
End:
207,004,885 bp from pter
Size:
77 bases
Orientation:
Minus strand

Genomic View for TRP-TGG5-1 Gene

Genes around TRP-TGG5-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRP-TGG5-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRP-TGG5-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRP-TGG5-1 Gene

Proteins for TRP-TGG5-1 Gene

Post-translational modifications for TRP-TGG5-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRP-TGG5-1 Gene

Domains & Families for TRP-TGG5-1 Gene

Gene Families for TRP-TGG5-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRP-TGG5-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRP-TGG5-1 Gene

Function for TRP-TGG5-1 Gene

Phenotypes From GWAS Catalog for TRP-TGG5-1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRP-TGG5-1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRP-TGG5-1 Gene

Localization for TRP-TGG5-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRP-TGG5-1 Gene

Pathways & Interactions for TRP-TGG5-1 Gene

SuperPathways for TRP-TGG5-1 Gene

No Data Available

Interacting Proteins for TRP-TGG5-1 Gene

Gene Ontology (GO) - Biological Process for TRP-TGG5-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRP-TGG5-1 Gene

Drugs & Compounds for TRP-TGG5-1 Gene

No Compound Related Data Available

Transcripts for TRP-TGG5-1 Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRP-TGG5-1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TRP-TGG5-1 Gene

No ASD Table

Relevant External Links for TRP-TGG5-1 Gene

GeneLoc Exon Structure for
TRP-TGG5-1
ECgene alternative splicing isoforms for
TRP-TGG5-1

No data available for mRNA/cDNA for TRP-TGG5-1 Gene

Expression for TRP-TGG5-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRP-TGG5-1 Gene

Orthologs for TRP-TGG5-1 Gene

No data available for Orthologs and Evolution for TRP-TGG5-1 Gene

Paralogs for TRP-TGG5-1 Gene

No data available for Paralogs for TRP-TGG5-1 Gene

Variants for TRP-TGG5-1 Gene

Relevant External Links for TRP-TGG5-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRP-TGG5-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRP-TGG5-1 Gene

Disorders for TRP-TGG5-1 Gene

No disorders were found for TRP-TGG5-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRP-TGG5-1 Gene

Publications for TRP-TGG5-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 60

Products for TRP-TGG5-1 Gene

Sources for TRP-TGG5-1 Gene

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