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Aliases for TRP-TGG3-5 Gene

Subcategory (RNA class) for TRP-TGG3-5 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRP-TGG3-5 Gene

  • Transfer RNA-Pro (TGG) 3-5 2 3
  • Transfer RNA Proline 16 (Anticodon UGG) 2 3
  • Transfer RNA-Pro (TGG) 3-4 2 3
  • TRNA-Pro-TGG-3-4 3
  • TRP-TGG3-4 3
  • TRNAP16 3

External Ids for TRP-TGG3-5 Gene

Previous HGNC Symbols for TRP-TGG3-5 Gene

  • TRNAP16
  • TRP-TGG3-4

Previous GeneCards Identifiers for TRP-TGG3-5 Gene

  • GC05M181189
  • GC05M181196
  • GC16P003284
  • GC16P003323
  • GC16P003329

Summaries for TRP-TGG3-5 Gene

GeneCards Summary for TRP-TGG3-5 Gene

TRP-TGG3-5 (Transfer RNA-Pro (TGG) 3-5) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRP-TGG3-5 Gene

Genomics for TRP-TGG3-5 Gene

Regulatory Elements for TRP-TGG3-5 Gene

Enhancers for TRP-TGG3-5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G003187 0.9 ENCODE 0.7 -0.2 -169 0.3 TBP PKNOX1 ATF1 ARNT SREBF2 ARID4B SIN3A GLI4 ZNF48 ZSCAN9 THOC6 LOC105371055 CREBBP RNPS1 ZNF263 PDPK2P ZNF213-AS1 LOC652276 ZNF205 TRP-TGG3-4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRP-TGG3-5 on UCSC Golden Path with GeneCards custom track

Promoters for TRP-TGG3-5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000082623 306 1201 PKNOX1 ATF1 ARNT ARID4B SIN3A GLI4 ZNF48 GTF3C2 ZNF263 SP3
ENSR00000279477 1506 401 ARNT ARID4B SIN3A FEZF1 ZNF2 FOS KLF13 ZNF263 SP3 ZHX2

Genomic Location for TRP-TGG3-5 Gene

Chromosome:
16
Start:
3,188,094 bp from pter
End:
3,188,165 bp from pter
Size:
72 bases
Orientation:
Plus strand

Genomic View for TRP-TGG3-5 Gene

Genes around TRP-TGG3-5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRP-TGG3-5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRP-TGG3-5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRP-TGG3-5 Gene

Proteins for TRP-TGG3-5 Gene

Post-translational modifications for TRP-TGG3-5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRP-TGG3-5 Gene

Domains & Families for TRP-TGG3-5 Gene

Gene Families for TRP-TGG3-5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRP-TGG3-5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRP-TGG3-5 Gene

Function for TRP-TGG3-5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRP-TGG3-5 Gene

Localization for TRP-TGG3-5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRP-TGG3-5 Gene

Pathways & Interactions for TRP-TGG3-5 Gene

SuperPathways for TRP-TGG3-5 Gene

No Data Available

Interacting Proteins for TRP-TGG3-5 Gene

Gene Ontology (GO) - Biological Process for TRP-TGG3-5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRP-TGG3-5 Gene

Drugs & Compounds for TRP-TGG3-5 Gene

No Compound Related Data Available

Transcripts for TRP-TGG3-5 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRP-TGG3-5 Gene

No ASD Table

Relevant External Links for TRP-TGG3-5 Gene

GeneLoc Exon Structure for
TRP-TGG3-5
ECgene alternative splicing isoforms for
TRP-TGG3-5

No data available for mRNA/cDNA for TRP-TGG3-5 Gene

Expression for TRP-TGG3-5 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRP-TGG3-5 Gene

Orthologs for TRP-TGG3-5 Gene

No data available for Orthologs and Evolution for TRP-TGG3-5 Gene

Paralogs for TRP-TGG3-5 Gene

No data available for Paralogs for TRP-TGG3-5 Gene

Variants for TRP-TGG3-5 Gene

Relevant External Links for TRP-TGG3-5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRP-TGG3-5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRP-TGG3-5 Gene

Disorders for TRP-TGG3-5 Gene

No disorders were found for TRP-TGG3-5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRP-TGG3-5 Gene

Publications for TRP-TGG3-5 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRP-TGG3-5 Gene

Sources for TRP-TGG3-5 Gene

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