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Aliases for TRP-CGG1-1 Gene

Subcategory (RNA class) for TRP-CGG1-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRP-CGG1-1 Gene

  • Transfer RNA-Pro (CGG) 1-1 2 3
  • Transfer RNA Proline 11 (Anticodon CGG) 2 3
  • TRNA-Pro-CGG-1-1 3
  • TRNAP11 3

External Ids for TRP-CGG1-1 Gene

Previous HGNC Symbols for TRP-CGG1-1 Gene

  • TRNAP11

Summaries for TRP-CGG1-1 Gene

GeneCards Summary for TRP-CGG1-1 Gene

TRP-CGG1-1 (Transfer RNA-Pro (CGG) 1-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRP-CGG1-1 Gene

Genomics for TRP-CGG1-1 Gene

Regulatory Elements for TRP-CGG1-1 Gene

Enhancers for TRP-CGG1-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G167713 2.1 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +0.6 576 4.2 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 TBX21 ZFP41 DUTP6 TADA1 MPZL1 CREG1 POU2F1 GC01M167716 TRP-CGG1-1
GH01G167679 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -31.6 -31596 6.9 PKNOX1 FOXA2 ZFP64 GATA2 ETV6 CBFB CEBPB ZNF398 CEBPA IKZF1 CREG1 RCSD1 POU2F1 TRP-CGG1-1 ENSG00000241666
GH01G167708 1 ENCODE dbSUPER 0.4 -5.6 -5609 0.7 HDGF EBF1 RELA POLR2A NCOR1 EED FOS ETV6 RELB IKZF2 ENSG00000250762 ENSG00000232194 ADCY10 TRP-CGG1-1 ENSG00000241666
GH01G167687 1.3 Ensembl ENCODE dbSUPER 0.3 -26.7 -26725 0.8 HDGF CTCF TBL1XR1 ARNT WRNIP1 JUN RAD21 RELA ZNF316 ZNF143 CREG1 TRP-CGG1-1 ENSG00000241666
GH01G167689 1.3 ENCODE dbSUPER 0.3 -25.1 -25067 0.1 PKNOX1 ARNT FEZF1 ZNF2 GLIS2 GATA2 FOS KLF7 ZNF488 TSHZ1 CREG1 TRP-CGG1-1 ENSG00000241666
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRP-CGG1-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRP-CGG1-1 Gene

Chromosome:
1
Start:
167,714,725 bp from pter
End:
167,714,796 bp from pter
Size:
72 bases
Orientation:
Plus strand

Genomic View for TRP-CGG1-1 Gene

Genes around TRP-CGG1-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRP-CGG1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRP-CGG1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRP-CGG1-1 Gene

Proteins for TRP-CGG1-1 Gene

Post-translational modifications for TRP-CGG1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRP-CGG1-1 Gene

Domains & Families for TRP-CGG1-1 Gene

Gene Families for TRP-CGG1-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRP-CGG1-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRP-CGG1-1 Gene

Function for TRP-CGG1-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRP-CGG1-1 Gene

Localization for TRP-CGG1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRP-CGG1-1 Gene

Pathways & Interactions for TRP-CGG1-1 Gene

SuperPathways for TRP-CGG1-1 Gene

No Data Available

Interacting Proteins for TRP-CGG1-1 Gene

Gene Ontology (GO) - Biological Process for TRP-CGG1-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRP-CGG1-1 Gene

Drugs & Compounds for TRP-CGG1-1 Gene

No Compound Related Data Available

Transcripts for TRP-CGG1-1 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRP-CGG1-1 Gene

No ASD Table

Relevant External Links for TRP-CGG1-1 Gene

GeneLoc Exon Structure for
TRP-CGG1-1
ECgene alternative splicing isoforms for
TRP-CGG1-1

No data available for mRNA/cDNA for TRP-CGG1-1 Gene

Expression for TRP-CGG1-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRP-CGG1-1 Gene

Orthologs for TRP-CGG1-1 Gene

No data available for Orthologs and Evolution for TRP-CGG1-1 Gene

Paralogs for TRP-CGG1-1 Gene

No data available for Paralogs for TRP-CGG1-1 Gene

Variants for TRP-CGG1-1 Gene

Relevant External Links for TRP-CGG1-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRP-CGG1-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRP-CGG1-1 Gene

Disorders for TRP-CGG1-1 Gene

No disorders were found for TRP-CGG1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRP-CGG1-1 Gene

Publications for TRP-CGG1-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRP-CGG1-1 Gene

Sources for TRP-CGG1-1 Gene

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