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Aliases for TRP-CGG1-1 Gene

Subcategory (RNA class) for TRP-CGG1-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRP-CGG1-1 Gene

  • Transfer RNA-Pro (CGG) 1-1 2 3
  • Transfer RNA Proline 11 (Anticodon CGG) 2 3
  • TRNA-Pro-CGG-1-1 3
  • TRNAP11 3

External Ids for TRP-CGG1-1 Gene

Previous HGNC Symbols for TRP-CGG1-1 Gene

  • TRNAP11

Summaries for TRP-CGG1-1 Gene

GeneCards Summary for TRP-CGG1-1 Gene

TRP-CGG1-1 (Transfer RNA-Pro (CGG) 1-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRP-CGG1-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRP-CGG1-1 Gene

Genomics for TRP-CGG1-1 Gene

Regulatory Elements for TRP-CGG1-1 Gene

Enhancers for TRP-CGG1-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H167713 2.1 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +0.6 576 4 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 ZC3H11A ZFP41 MEF2D POU2F1 MPZL1 TADA1 LOC441914 CNN2P10 FMO11P ADCY10 DUTP6 TIPRL CREG1
GH01H167679 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -31.6 -31596 6 SOX13 PKNOX1 FOXA2 ZFP64 CEBPG ZNF644 POLR2A RCOR1 SOX5 GATAD2A CREG1 RCSD1 POU2F1 TRP-CGG1-1 ENSG00000241666
GH01H167687 1.3 Ensembl ENCODE dbSUPER 0.3 -26.7 -26725 0 HDGF CTCF RB1 TBL1XR1 ARNT RAD21 RELA CC2D1A ZNF316 SMC3 CREG1 TRP-CGG1-1 ENSG00000241666
GH01H167708 0.9 ENCODE dbSUPER 0.4 -5.6 -5609 0 CBFB EBF1 DPF2 RELA IKZF1 EED ETV6 RUNX3 IKZF2 PRDM4 ENSG00000232194 ENSG00000250762 ADCY10 TRP-CGG1-1 ENSG00000241666
GH01H167660 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.2 -50.8 -50754 6 KLF17 BATF ZNF143 FOS ETV6 RUNX3 CREM IKZF2 JUNB NR2F2 RCSD1 CREG1 MPZL1 ENSG00000250762 ENSG00000232194 XCL2 ENSG00000241666 TRP-CGG1-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRP-CGG1-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRP-CGG1-1 Gene

Chromosome:
1
Start:
167,714,725 bp from pter
End:
167,714,796 bp from pter
Size:
72 bases
Orientation:
Plus strand

Genomic View for TRP-CGG1-1 Gene

Genes around TRP-CGG1-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRP-CGG1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRP-CGG1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRP-CGG1-1 Gene

Proteins for TRP-CGG1-1 Gene

Post-translational modifications for TRP-CGG1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRP-CGG1-1 Gene

Domains & Families for TRP-CGG1-1 Gene

Gene Families for TRP-CGG1-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRP-CGG1-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRP-CGG1-1 Gene

Function for TRP-CGG1-1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRP-CGG1-1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRP-CGG1-1 Gene

Localization for TRP-CGG1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRP-CGG1-1 Gene

Pathways & Interactions for TRP-CGG1-1 Gene

SuperPathways for TRP-CGG1-1 Gene

No Data Available

Interacting Proteins for TRP-CGG1-1 Gene

Gene Ontology (GO) - Biological Process for TRP-CGG1-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRP-CGG1-1 Gene

Drugs & Compounds for TRP-CGG1-1 Gene

No Compound Related Data Available

Transcripts for TRP-CGG1-1 Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRP-CGG1-1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TRP-CGG1-1 Gene

No ASD Table

Relevant External Links for TRP-CGG1-1 Gene

GeneLoc Exon Structure for
TRP-CGG1-1
ECgene alternative splicing isoforms for
TRP-CGG1-1

No data available for mRNA/cDNA for TRP-CGG1-1 Gene

Expression for TRP-CGG1-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRP-CGG1-1 Gene

Orthologs for TRP-CGG1-1 Gene

No data available for Orthologs and Evolution for TRP-CGG1-1 Gene

Paralogs for TRP-CGG1-1 Gene

No data available for Paralogs for TRP-CGG1-1 Gene

Variants for TRP-CGG1-1 Gene

Relevant External Links for TRP-CGG1-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRP-CGG1-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRP-CGG1-1 Gene

Disorders for TRP-CGG1-1 Gene

No disorders were found for TRP-CGG1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRP-CGG1-1 Gene

Publications for TRP-CGG1-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 60

Products for TRP-CGG1-1 Gene

Sources for TRP-CGG1-1 Gene

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