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Aliases for TRP-AGG2-5 Gene

Subcategory (RNA class) for TRP-AGG2-5 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRP-AGG2-5 Gene

  • Transfer RNA-Pro (AGG) 2-5 2 3
  • Transfer RNA Proline 1 (Anticodon AGG) 2 3
  • TRNA Proline 1 (Anticodon AGG) 2 3
  • Transfer RNA-Pro (AGG) 2-3 2 3
  • TRNA-Pro-AGG-2-3 3
  • TRNA Proline 1 2
  • TRP-AGG2-3 3
  • TRNAP1 3
  • TRNP1 3
  • TRP1 3

External Ids for TRP-AGG2-5 Gene

Previous HGNC Symbols for TRP-AGG2-5 Gene

  • TRNP1
  • TRP1
  • TRNAP1
  • TRP-AGG2-3

Previous GeneCards Identifiers for TRP-AGG2-5 Gene

  • GC16M003182

Summaries for TRP-AGG2-5 Gene

GeneCards Summary for TRP-AGG2-5 Gene

TRP-AGG2-5 (Transfer RNA-Pro (AGG) 2-5) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRP-AGG2-5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRP-AGG2-5 Gene

Genomics for TRP-AGG2-5 Gene

GeneHancer (GH) Regulatory Elements for TRP-AGG2-5 Gene

Promoters and enhancers for TRP-AGG2-5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I020609 Promoter/Enhancer 1.6 Ensembl ENCODE 550.8 -0.4 -443 1.8 PKNOX1 MLX ARNT ARID4B NEUROD1 SIN3A ZNF2 IRF4 YY1 SLC30A9 ENSG00000259060 RNASE11 TRL-AAG2-3 TRP-AGG2-5 PARP2 SUPT16H METTL3 TTC5 ENSG00000258515 CHD8
GH14I020608 Enhancer 0.5 ENCODE 550.8 +0.6 554 0.1 ZNF148 ZNF366 ZNF512 EBF1 ENSG00000259060 RNASE11 TRL-AAG2-3 TRP-AGG2-5 RNASE12
GH14I020605 Enhancer 0.8 ENCODE 0.8 +3.0 2978 1.2 ELF3 FOXA2 SIN3A RAD21 RARA ETS1 ZNF143 MIXL1 HMG20B ZNF654 RNASE9 RNA5SP382 TEP1 SNORD126 CCNB1IP1 ENSG00000259060 RNASE11 TRP-AGG2-5 LOC254028 RNASE12
GH14I020601 Enhancer 0.4 Ensembl 0.4 +7.5 7506 0.2 STAT1 REST RNASE9 RNA5SP382 TEP1 SNORD126 CCNB1IP1 ENSG00000259060 TRP-AGG2-5 RNASE11 LOC254028 RNASE12
GH14I020591 Enhancer 0.3 FANTOM5 0.4 +17.5 17536 0.1 IKZF1 RNASE12 OR4K17 OR6S1 OR11H6 OR4N5 OR11H4 RNASE8 EDDM3B RNASE9 RNASE13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRP-AGG2-5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRP-AGG2-5 Gene

Genomic Locations for TRP-AGG2-5 Gene
chr14:20,609,336-20,609,407
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand
chr14:21,077,495-21,077,566
(GRCh37/hg19)

Genomic View for TRP-AGG2-5 Gene

Genes around TRP-AGG2-5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRP-AGG2-5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRP-AGG2-5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRP-AGG2-5 Gene

Proteins for TRP-AGG2-5 Gene

Post-translational modifications for TRP-AGG2-5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRP-AGG2-5 Gene

Domains & Families for TRP-AGG2-5 Gene

Gene Families for TRP-AGG2-5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRP-AGG2-5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRP-AGG2-5 Gene

Function for TRP-AGG2-5 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRP-AGG2-5 Gene

Localization for TRP-AGG2-5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRP-AGG2-5 Gene

Pathways & Interactions for TRP-AGG2-5 Gene

SuperPathways for TRP-AGG2-5 Gene

No Data Available

Interacting Proteins for TRP-AGG2-5 Gene

Gene Ontology (GO) - Biological Process for TRP-AGG2-5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRP-AGG2-5 Gene

Drugs & Compounds for TRP-AGG2-5 Gene

No Compound Related Data Available

Transcripts for TRP-AGG2-5 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRP-AGG2-5 Gene

No ASD Table

Relevant External Links for TRP-AGG2-5 Gene

GeneLoc Exon Structure for
TRP-AGG2-5
ECgene alternative splicing isoforms for
TRP-AGG2-5

No data available for mRNA/cDNA for TRP-AGG2-5 Gene

Expression for TRP-AGG2-5 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRP-AGG2-5 Gene

Orthologs for TRP-AGG2-5 Gene

No data available for Orthologs and Evolution for TRP-AGG2-5 Gene

Paralogs for TRP-AGG2-5 Gene

No data available for Paralogs for TRP-AGG2-5 Gene

Variants for TRP-AGG2-5 Gene

Additional Variant Information for TRP-AGG2-5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRP-AGG2-5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRP-AGG2-5 Gene

Disorders for TRP-AGG2-5 Gene

No disorders were found for TRP-AGG2-5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRP-AGG2-5 Gene

Publications for TRP-AGG2-5 Gene

  1. Nucleotide sequence and transcription of a human tRNA gene cluster with four genes. (PMID: 3557125) Chang YN … Pirtle RM (Gene 1986) 2 3 58
  2. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58
  3. Mitochondrial DNA polymorphisms in bipolar disorder. (PMID: 11223103) Kato T … Kato N (Journal of affective disorders 2001) 3 58
  4. Dinucleotide repeat in the human mitochondrial D-loop. (PMID: 1301157) Bodenteich A … Merril CR (Human molecular genetics 1992) 3 58
  5. Differentiation of HT-29 human colonic adenocarcinoma cells correlates with increased expression of mitochondrial RNA: effects of trehalose on cell growth and maturation. (PMID: 1377597) Lu X … Seligy VL (Cancer research 1992) 3 58

Products for TRP-AGG2-5 Gene

Sources for TRP-AGG2-5 Gene

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