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Aliases for TRMT61B Gene

Aliases for TRMT61B Gene

  • TRNA Methyltransferase 61B 2 3 5
  • TRNA Methyltransferase 61 Homolog B (S. Cerevisiae) 2
  • EC 2.1.1.220 4

External Ids for TRMT61B Gene

Previous GeneCards Identifiers for TRMT61B Gene

  • GC02M028926
  • GC02M029072

Summaries for TRMT61B Gene

GeneCards Summary for TRMT61B Gene

TRMT61B (TRNA Methyltransferase 61B) is a Protein Coding gene. Among its related pathways are tRNA processing and Gene Expression. GO annotations related to this gene include protein-L-isoaspartate (D-aspartate) O-methyltransferase activity and tRNA (adenine-N1-)-methyltransferase activity.

UniProtKB/Swiss-Prot for TRMT61B Gene

  • Methyltransferase that catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in various tRNAs in mitochondrion, including tRNA(Leu) (deciphering codons UUA or UUG), tRNA(Lys) and tRNA(Ser) (deciphering codons UCA, UCU, UCG or UCC) (PubMed:23097428). Catalyzes the formation of 1-methyladenosine at position 947 of mitochondrial 16S ribosomal RNA and this modification is most likely important for mitoribosomal structure and function (PubMed:27631568).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRMT61B Gene

Genomics for TRMT61B Gene

Regulatory Elements for TRMT61B Gene

Enhancers for TRMT61B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F028802 1.2 FANTOM5 ENCODE 50.5 +67.2 67169 1.7 RFX1 MAFG ZIC2 ZNF316 ZFHX2 SMARCA4 NFE2L1 NFE2 MAFK EMSY TRMT61B WDR43 PPP1CB SPDYA ENSG00000230730 FOSL2 ENSG00000273233
GH02F028821 0.8 Ensembl ENCODE 47 +48.8 48797 0.2 BCOR ELF3 CTCF ARID4B ZNF2 RAD21 SCRT2 ZNF143 SMC3 RCOR1 TRMT61B FAM179A SPDYA WDR43 ENSG00000230730 ENSG00000273233
GH02F028769 0.5 Ensembl 45.4 +99.5 99509 3.2 PKNOX1 CBX3 ZNF335 ZNF316 GATA3 CTBP1 MAFK RFX1 NR2F1 MAFG TRMT61B ENSG00000230730 WDR43 FAM179A SPDYA LOC100505774
GH02F028747 0.6 FANTOM5 ENCODE 42.6 +118.3 118302 9.0 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 YY1 SP5 NFYC TRMT61B FAM179A PPP1CB SPDYA ENSG00000230730 WDR43 FOSL2 LOC100505774
GH02F028868 0.4 ENCODE 36.2 +0.2 210 2.2 PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 TRMT61B FAM179A FOSL2 FLJ31356 ENSG00000273233
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRMT61B on UCSC Golden Path with GeneCards custom track

Promoters for TRMT61B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000012162 109 2400 PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1

Genomic Location for TRMT61B Gene

Chromosome:
2
Start:
28,849,821 bp from pter
End:
28,870,309 bp from pter
Size:
20,489 bases
Orientation:
Minus strand

Genomic View for TRMT61B Gene

Genes around TRMT61B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRMT61B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRMT61B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRMT61B Gene

Proteins for TRMT61B Gene

  • Protein details for TRMT61B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BVS5-TR61B_HUMAN
    Recommended name:
    tRNA (adenine(58)-N(1))-methyltransferase, mitochondrial
    Protein Accession:
    Q9BVS5
    Secondary Accessions:
    • Q9H0Q9
    • Q9NWS7

    Protein attributes for TRMT61B Gene

    Size:
    477 amino acids
    Molecular mass:
    52965 Da
    Quaternary structure:
    • Homooligomer; in contrast to TRMT61A, does not form a heterotetramer.

    Three dimensional structures from OCA and Proteopedia for TRMT61B Gene

neXtProt entry for TRMT61B Gene

Post-translational modifications for TRMT61B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TRMT61B Gene

No data available for DME Specific Peptides for TRMT61B Gene

Domains & Families for TRMT61B Gene

Protein Domains for TRMT61B Gene

Suggested Antigen Peptide Sequences for TRMT61B Gene

Graphical View of Domain Structure for InterPro Entry

Q9BVS5

UniProtKB/Swiss-Prot:

TR61B_HUMAN :
  • Belongs to the class I-like SAM-binding methyltransferase superfamily. TRM61 family.
Family:
  • Belongs to the class I-like SAM-binding methyltransferase superfamily. TRM61 family.
genes like me logo Genes that share domains with TRMT61B: view

No data available for Gene Families for TRMT61B Gene

Function for TRMT61B Gene

Molecular function for TRMT61B Gene

UniProtKB/Swiss-Prot CatalyticActivity:
S-adenosyl-L-methionine + adenine(58) in tRNA = S-adenosyl-L-homocysteine + N(1)-methyladenine(58) in tRNA.
UniProtKB/Swiss-Prot Function:
Methyltransferase that catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in various tRNAs in mitochondrion, including tRNA(Leu) (deciphering codons UUA or UUG), tRNA(Lys) and tRNA(Ser) (deciphering codons UCA, UCU, UCG or UCC) (PubMed:23097428). Catalyzes the formation of 1-methyladenosine at position 947 of mitochondrial 16S ribosomal RNA and this modification is most likely important for mitoribosomal structure and function (PubMed:27631568).

Enzyme Numbers (IUBMB) for TRMT61B Gene

Gene Ontology (GO) - Molecular Function for TRMT61B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 21903422
GO:0008168 methyltransferase activity IEA --
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEA,IDA 23097428
GO:0016433 rRNA (adenine) methyltransferase activity IMP 27631568
GO:0016740 transferase activity IEA --
genes like me logo Genes that share ontologies with TRMT61B: view
genes like me logo Genes that share phenotypes with TRMT61B: view

Animal Model Products

miRNA for TRMT61B Gene

miRTarBase miRNAs that target TRMT61B

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TRMT61B Gene

Localization for TRMT61B Gene

Subcellular locations from UniProtKB/Swiss-Prot for TRMT61B Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TRMT61B Gene COMPARTMENTS Subcellular localization image for TRMT61B gene
Compartment Confidence
mitochondrion 5
cytosol 1
endoplasmic reticulum 1
extracellular 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for TRMT61B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IDA 23097428
GO:0005759 mitochondrial matrix TAS --
GO:0031515 tRNA (m1A) methyltransferase complex IEA,IBA --
genes like me logo Genes that share ontologies with TRMT61B: view

Pathways & Interactions for TRMT61B Gene

genes like me logo Genes that share pathways with TRMT61B: view

Pathways by source for TRMT61B Gene

Gene Ontology (GO) - Biological Process for TRMT61B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008033 tRNA processing IEA --
GO:0030488 tRNA methylation IEA --
GO:0031167 rRNA methylation IEA --
GO:0032259 methylation IEA --
GO:0051260 protein homooligomerization IDA 23097428
genes like me logo Genes that share ontologies with TRMT61B: view

No data available for SIGNOR curated interactions for TRMT61B Gene

Drugs & Compounds for TRMT61B Gene

(2) Drugs for TRMT61B Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
S-Adenosylmethionine Approved Nutra 0
s-adenosylhomocysteine Experimental Pharma 0
genes like me logo Genes that share compounds with TRMT61B: view

Transcripts for TRMT61B Gene

Unigene Clusters for TRMT61B Gene

TRNA methyltransferase 61 homolog B (S. cerevisiae):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRMT61B Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3 ^ 4 ^ 5
SP1: -
SP2:
SP3: -
SP4: - -

Relevant External Links for TRMT61B Gene

GeneLoc Exon Structure for
TRMT61B
ECgene alternative splicing isoforms for
TRMT61B

Expression for TRMT61B Gene

mRNA expression in normal human tissues for TRMT61B Gene

Protein differential expression in normal tissues from HIPED for TRMT61B Gene

This gene is overexpressed in Heart (48.4) and Blymphocyte (7.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TRMT61B Gene



Protein tissue co-expression partners for TRMT61B Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TRMT61B Gene:

TRMT61B

SOURCE GeneReport for Unigene cluster for TRMT61B Gene:

Hs.468026
genes like me logo Genes that share expression patterns with TRMT61B: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TRMT61B Gene

Orthologs for TRMT61B Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRMT61B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRMT61B 34 35
  • 99.72 (n)
cow
(Bos Taurus)
Mammalia TRMT61B 34
  • 84.96 (n)
dog
(Canis familiaris)
Mammalia TRMT61B 34 35
  • 81.48 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia TRMT61B 35
  • 49 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TRMT61B 35
  • 46 (a)
OneToOne
chicken
(Gallus gallus)
Aves TRMT61B 34 35
  • 63.32 (n)
lizard
(Anolis carolinensis)
Reptilia TRMT61B 35
  • 47 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia trmt61b 34
  • 60.15 (n)
Str.14744 34
zebrafish
(Danio rerio)
Actinopterygii LOC100003205 34
  • 54.71 (n)
TRMT61B 35
  • 37 (a)
OneToOne
Species where no ortholog for TRMT61B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TRMT61B Gene

ENSEMBL:
Gene Tree for TRMT61B (if available)
TreeFam:
Gene Tree for TRMT61B (if available)

Paralogs for TRMT61B Gene

No data available for Paralogs for TRMT61B Gene

Variants for TRMT61B Gene

Sequence variations from dbSNP and Humsavar for TRMT61B Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10177006 -- 28,865,390(+) AGACA(A/G)TTTAT intron-variant
rs10179580 -- 28,865,472(+) AGAGA(G/T)AGGCA intron-variant
rs10210460 -- 28,849,490(+) TTTTG(C/T)CATGT intron-variant, downstream-variant-500B
rs111231216 -- 28,865,284(+) GATCC(A/G)AGAAT intron-variant
rs111254854 -- 28,858,105(+) GCGCC(A/T)TCTCG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRMT61B Gene

Variant ID Type Subtype PubMed ID
esv2674264 CNV deletion 23128226
esv29033 CNV loss 19812545
esv3590162 CNV loss 21293372
esv3590163 CNV loss 21293372
esv3590164 CNV loss 21293372
nsv518751 CNV gain 19592680
nsv817695 CNV gain 17921354
nsv819532 CNV loss 19587683

Variation tolerance for TRMT61B Gene

Residual Variation Intolerance Score: 62% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.18; 39.44% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TRMT61B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRMT61B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TRMT61B Gene

Disorders for TRMT61B Gene

Relevant External Links for TRMT61B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRMT61B

No disorders were found for TRMT61B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRMT61B Gene

Publications for TRMT61B Gene

  1. Trmt61B is a methyltransferase responsible for 1-methyladenosine at position 58 of human mitochondrial tRNAs. (PMID: 23097428) Chujo T. … Suzuki T. (RNA 2012) 2 3 4 64
  2. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4 64
  3. Mitochondrial 16S rRNA is methylated by tRNyA methyltransferase TRMT61B in all vertebrates. (PMID: 27631568) Bar-Yaacov D. … Mishmar D. (PLoS Biol. 2016) 3 4 64
  4. Mitochondrial Protein Interaction Mapping Identifies Regulators of Respiratory Chain Function. (PMID: 27499296) Floyd B.J. … Pagliarini D.J. (Mol. Cell 2016) 3 64
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64

Products for TRMT61B Gene

Sources for TRMT61B Gene

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