TRMT112P6 Gene
pseudogene GIFtS: 16
GCID: GC02M026251
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TRNA Methyltransferase 11-2 Homolog (S. Cerevisiae) Pseudogene...
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Aliases
for TRMT112P6 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
10fRNAdb,
12H-InvDB,
13NCBI,
14NONCODE,
and/or 15RNAdb)
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| Aliases |
|---|
| TRNA Methyltransferase 11-2 Homolog (S. Cerevisiae) Pseudogene 61 2 |
Export aliases for TRMT112P6 gene to outside databases |
Summaries
for TRMT112P6 gene(According to Entrez Gene,
GeneCards,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
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GeneCards Summary for TRMT112P6 Gene:
TRMT112P6 (tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 6) is a pseudogene. An important paralog of this gene is TRMT112.
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Genomic Views
for TRMT112P6 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 75),
Regulatory elements and Epigenetics data according to
QIAGEN, and/or
SwitchGear Genomics)
About This Section
TryGeneCards Plus | Regulatory elements:
 Search for regulatory transcription factor binding sites for TRMT112P6
Other transcription factors
Search Chromatin IP Primers for TRMT112P6
Epigenetics:
| | DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TRMT112P6 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 2p23.3 Ensembl cytogenetic band: 2p23.3 HGNC cytogenetic band: 2p23.3TRMT112P6 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 2 GeneLoc Exon Structure GeneLoc location for GC02M026251: view genomic region
(about GC identifiers)
Start:
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26,250,902 bp from pter |
End:
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26,251,493 bp from pter |
Size:
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592 bases |
Orientation:
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minus strand |
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Proteins
for TRMT112P6 gene
(According to
1UniProtKB,
HORDE,
2neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to PhosphoSitePlus,
Specific Peptides from DME,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Cloud-Clone Corp.,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Cloud-Clone Corp.,
Antibodies by
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
LSBio,
Abcam, and/or
Cloud-Clone Corp.)
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UniProtKB/TrEMBL: M0R242 (See
protein sequence)Recommended Name: Uncharacterized protein Size: 135 amino acids; 15572 Da
Caution: The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered
as preliminary data
ENSEMBL proteins: ENSP00000472299
TRMT112P6 Human Recombinant
Protein Products:TRMT112P6 Antibody
Products:TRMT112P6 Assay Products: |
Domains /
Families
for TRMT112P6 gene(According to HGNC, IUPHAR, InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
TryGeneCards Plus | 1 InterPro protein domain:Graphical View of Domain Structure for InterPro Entry M0R242 ProtoNet protein and cluster: M0R242
TRMT112P6 for domains About GeneDecksing
|
Function
for TRMT112P6 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
genOway,
transcription factor targeting from QIAGEN
and/or HOMER,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
SwitchGear Genomics,
Gene Editing from DNA2.0,
Clones from OriGene,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
ESI BIO,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene.)
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Animal Models:
Inhib. RNA
Products: |  | Browse OriGene RNAi
| | | Predesigned siRNA for gene silencing in human, mouse, rat TRMT112P6 |
Cell Line
Products: |  | GenScript Custom overexpressing Cell Line Services for TRMT112P6 | |  | Browse ESI BIO Cell Lines and PureStem Progenitors for TRMT112P6  | In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRMT112P6 |
Localization
for TRMT112P6 gene
(According to UniProtKB, COMPARTMENTS Subcellular localization database,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene.)
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Pathways & Interactions
for TRMT112P6 gene
(SuperPaths according to PathCards,
Pathways according to
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Sino Biological,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
QIAGEN,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene).
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Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TRMT112P6
Interactions:
Search GeneGlobe Interaction Network for TRMT112P6
|
Drugs & Compounds
for TRMT112P6 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience,
ApexBio,
HMDB,
BitterDB, and/or
Novoseek,
Ligands according to IUPHAR,
and Drugs according to DrugBank,
Enzo Life Sciences, and/or
PharmGKB)
About This Section
TryGeneCards Plus |  Browse compounds at ApexBio
 Browse Tocris compounds for TRMT112P6
|
Transcripts
for TRMT112P6 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
Conferences by KenesGroup,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
SwitchGear Genomics,
Tagged/untagged cDNA clones from
OriGene,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene, and/or
QIAGEN
)
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1 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000599234
Inhib. RNA
Products: | | Browse OriGene RNAi
| |
| | Predesigned siRNA for gene silencing in human, mouse, rat TRMT112P6 |
3 AceView cDNA sequences: AA505307 BI495114 AA430529
GeneLoc Exon Structure
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Expression
for TRMT112P6 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
Protein expression images according to data from SPIRE 1MOPED,
2PaxDb, and 3MaxQB,
plus additional links to
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
QIAGEN,
Primers from
OriGene, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
TryGeneCards Plus | See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --
TRMT112P6 Protein expression data from MOPED1, PaxDb2 and
MaxQB3:  --
Custom PCR Arrays for TRMT112P6
Primer
Products: | | Browse OriGene qPCR
| | | Search Pre-validated RT2 qPCR
Primer Assays in human, mouse, rat TRMT112P6 | | | QuantiTect SYBR Green Assays in human, mouse, rat TRMT112P6 | | | QuantiFast Probe-based Assays in human, mouse, rat TRMT112P6 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRMT112P6 |
Orthologs
for TRMT112P6 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
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This gene was present in the common ancestor of animals and fungi.
Orthologs for TRMT112P6 gene from Selected species (see all 10) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
mouse
(Mus musculus) |
Mammalia |
Trmt112-ps25 |
predicted gene 13072 |
-- |
|
4 (79.43 cM) 149457329 |
lizard
(Anolis carolinensis) |
Reptilia |
-- |
Uncharacterized protein |
62(a) |
1 → many |
AAWZ02036029(7174-16443) |
zebrafish
(Danio rerio) |
Actinopterygii |
trmt1126 |
tRNA methyltransferase 11-2 homolog (S. cerevisiae... |
59(a) |
1 → many |
14(8777068-8785232) ENSDARG00000071878 |
fruit fly
(Drosophila melanogaster) |
Insecta |
CG129756 |
-- |
48(a) |
1 → many |
3L(21209095-21209939) |
worm
(Caenorhabditis elegans) |
Secernentea |
C04H5.16 |
Protein C04H5.1 (C04H5.1) mRNA, complete cds |
34(a) |
1 → many |
II(14534298-14535266) WBGene00007312 |
baker's yeast
(Saccharomyces cerevisiae) |
Saccharomycetes |
TRM1126 |
Subunit of tRNA methyltransferase (MTase) complexe... |
28(a) |
1 → many |
XIV(707788-708195) YNR046W |
ENSEMBL Gene Tree for TRMT112P6 (if available)
TreeFam Gene Tree for TRMT112P6 (if available) |
Paralogs
for TRMT112P6 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
TryGeneCards Plus | Paralogs for TRMT112P6 gene
- TRMT1122
TRMT112P6 for paralogs About GeneDecksing
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Genomic Variants
for TRMT112P6 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
4UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD), the Human Cytochrome P450 Allele
Nomenclature Database, and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
About This Section
TryGeneCards Plus | | | Site Specific Mutation Identification with PCR Assays |
|
Disorders
/ Diseases
for TRMT112P6 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Conferences by KenesGroup,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
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Publications
for TRMT112P6 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
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External Searches for TRMT112P6 gene (in PubMed,
OMIM, and NCBI Bookshelf)
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Genome Databases showing TRMT112P6 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
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Other Databases showing TRMT112P6 gene
(According to HUGE)
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Specialized Databases showing TRMT112P6 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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TryGeneCards Plus | Patent Information for TRMT112P6 gene:
Search GeneIP for patents involving TRMT112P6
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Products
for TRMT112P6 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or
ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory,
genOway)
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|  | Block miRNA regulation of human, mouse, rat TRMT112P6 using miScript Target Protectors | | SeqTarget long-range PCR primers for resequencing TRMT112P6 | | | DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TRMT112P6 | | Predesigned siRNA for gene silencing in human, mouse, rat TRMT112P6 | | | QuantiFast Probe-based Assays in human, mouse, rat TRMT112P6 | | QuantiTect SYBR Green Assays in human, mouse, rat TRMT112P6 | | | Custom PCR Arrays for TRMT112P6 | | Search Chromatin IP Primers for TRMT112P6 | | | Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat TRMT112P6 | | Search GeneGlobe Interaction Network for TRMT112P6 | | | Search Regulatory tfbs for TRMT112P6 |
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 |  | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRMT112P6 |
| |  |  |  |  | | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat TRMT112P6 |
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