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TRMT112P6 Gene(Pseudogene)

TRNA Methyltransferase 11-2 Homolog (S. Cerevisiae) Pseudogene 6

GCID:
GC02M026028
GIFtS:
11
Genes Participants
UDN Logo

Aliases for TRMT112P6 Gene

Aliases for TRMT112P6 Gene

  • TRNA Methyltransferase 11-2 Homolog (S. Cerevisiae) Pseudogene 6 2 3 5

External Ids for TRMT112P6 Gene

Previous GeneCards Identifiers for TRMT112P6 Gene

  • GC02M026251

Summaries for TRMT112P6 Gene

GeneCards Summary for TRMT112P6 Gene

TRMT112P6 (TRNA Methyltransferase 11-2 Homolog (S. Cerevisiae) Pseudogene 6) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRMT112P6 Gene

Genomics for TRMT112P6 Gene

Products:

  1. Regulatory Element

Regulatory Elements for TRMT112P6 Gene

Enhancers for TRMT112P6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F026016 1.6 FANTOM5 Ensembl ENCODE 0.4 +10.8 10793 3.5 PKNOX1 SIN3A GLIS2 FOS REST PPARG ZNF592 KAT8 SREBF1 MAFF RNU6-942P KIF3C RAB10 GAREM2 TRMT112P6 GC02P025994
GH02F026026 0.7 Ensembl ENCODE 0.8 +1.6 1624 0.8 IKZF1 FOXP2 YY1 GAREM2 TRMT112P6 GC02P025994
GH02F025997 1.7 FANTOM5 Ensembl ENCODE 0.3 +27.9 27924 6.6 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF48 SLC30A9 FOS DEK SP5 RAB10 RNU6-942P GAREM2 GC02P025994 TRMT112P6
GH02F026019 1.2 Ensembl ENCODE 0.4 +8.1 8129 1.0 HDAC1 HDGF CBX3 NFRKB SIN3A ARID4B DMAP1 ZSCAN9 CHAMP1 ZNF335 RNU6-942P KIF3C GAREM2 TRMT112P6 GC02P025994
GH02F026011 1.6 FANTOM5 Ensembl ENCODE 0.3 +16.1 16090 3.1 PKNOX1 MLX ARID4B SIN3A FEZF1 YY1 FOS DEK ZNF263 SP3 RAB10 RNU6-942P KIF3C GAREM2 TRMT112P6 GC02P025994
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRMT112P6 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRMT112P6 Gene

Chromosome:
2
Start:
26,028,033 bp from pter
End:
26,028,624 bp from pter
Size:
592 bases
Orientation:
Minus strand

Genomic View for TRMT112P6 Gene

Genes around TRMT112P6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRMT112P6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRMT112P6 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRMT112P6 Gene

Proteins for TRMT112P6 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRMT112P6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRMT112P6 Gene

Domains & Families for TRMT112P6 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRMT112P6 Gene

Function for TRMT112P6 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for TRMT112P6 Gene

GenomeRNAi human phenotypes for TRMT112P6:
genes like me logo Genes that share phenotypes with TRMT112P6: view

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRMT112P6 Gene

Localization for TRMT112P6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRMT112P6 Gene

Pathways & Interactions for TRMT112P6 Gene

SuperPathways for TRMT112P6 Gene

PathCards logo More details on SuperPathways for TRMT112P6
No Data Available

Interacting Proteins for TRMT112P6 Gene

Gene Ontology (GO) - Biological Process for TRMT112P6 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRMT112P6 Gene

Drugs & Compounds for TRMT112P6 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRMT112P6 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for TRMT112P6 Gene

(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRMT112P6 Gene

No ASD Table

Relevant External Links for TRMT112P6 Gene

GeneLoc Exon Structure for
TRMT112P6
ECgene alternative splicing isoforms for
TRMT112P6

Expression for TRMT112P6 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRMT112P6 Gene

mRNA expression in normal human tissues for TRMT112P6 Gene
mRNA expression by GTEx for TRMT112P6 Gene

NURSA nuclear receptor signaling pathways regulating expression of TRMT112P6 Gene:

TRMT112P6
genes like me logo Genes that share expression patterns with TRMT112P6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRMT112P6 Gene

Orthologs for TRMT112P6 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for TRMT112P6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia -- 35
  • 98 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia -- 35
  • 79 (a)
 OneToMany
mouse
(Mus musculus)
 Mammalia Trmt112 35
  • 77 (a)
 OneToMany
cow
(Bos Taurus)
 Mammalia -- 35
  • 73 (a)
 ManyToMany
lizard
(Anolis carolinensis)
 Reptilia -- 35
  • 62 (a)
 OneToMany
zebrafish
(Danio rerio)
 Actinopterygii trmt112 35
  • 59 (a)
 OneToMany
fruit fly
(Drosophila melanogaster)
 Insecta CG12975 35
  • 48 (a)
 OneToMany
worm
(Caenorhabditis elegans)
 Secernentea C04H5.1 35
  • 34 (a)
 OneToMany
baker's yeast
(Saccharomyces cerevisiae)
 Saccharomycetes TRM112 35
  • 28 (a)
 OneToMany
sea squirt
(Ciona savignyi)
 Ascidiacea CSA.6839 35
  • 44 (a)
 OneToMany
Species where no ortholog for TRMT112P6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for TRMT112P6 Gene

ENSEMBL:
Gene Tree for TRMT112P6 (if available)
TreeFam:
Gene Tree for TRMT112P6 (if available)

Paralogs for TRMT112P6 Gene

No data available for Paralogs for TRMT112P6 Gene

Variants for TRMT112P6 Gene

Relevant External Links for TRMT112P6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRMT112P6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRMT112P6 Gene

Disorders for TRMT112P6 Gene

No disorders were found for TRMT112P6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRMT112P6 Gene

Publications for TRMT112P6 Gene

No publications were found for TRMT112P6 Gene.

Products for TRMT112P6 Gene

Sources for TRMT112P6 Gene

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