TRMT112P6 Gene pseudogene GIFtS : 16 GCID: GC02 M026251
TRNA Methyltransferase 11-2 Homolog (S. Cerevisiae) Pseudogene...
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Aliasesfor TRMT112P6 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
10 fRNAdb ,
12 H-InvDB ,
13 NCBI ,
14 NONCODE ,
and/or 15 RNAdb )About This Section
Aliases TRNA Methyltransferase 11-2 Homolog (S. Cerevisiae) Pseudogene 6 1 2
Export aliases for TRMT112P6 gene to outside databases
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Summariesfor TRMT112P6 gene (According to Entrez Gene ,
GeneCards ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section
GeneCards Summary for TRMT112P6 Gene: TRMT112P6 (tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 6) is a pseudogene. An important paralog of this gene is TRMT112 .
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Genomic Viewsfor TRMT112P6 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,miRBase ,UCSC (hg19) and
Ensembl (release 75) ,
Regulatory elements and Epigenetics data according to
QIAGEN , and/or
SwitchGear Genomics )About This Section
Regulatory elements: Search for regulatory transcription factor binding sites for TRMT112P6 Other transcription factors Search Chromatin IP Primers for TRMT112P6 Epigenetics: DNA Methylation CpG Assay Predesigned for Pyrosequencing in human mouse rat
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2p23.3 Ensembl cytogenetic band: 2p23.3 HGNC cytogenetic band: 2p23.3 TRMT112P6 Gene in genomic location: bands according to Ensembl, locations according to
Entrez Gene Ensembl GeneLoc information about chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02M026251: view genomic region
(about GC identifiers )
Start: 26,250,902 bp from pter End:
26,251,493 bp from pter
Size: 592 bases Orientation:
minus strand
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Proteinsfor TRMT112P6 gene
(According to
1 UniProtKB ,
HORDE ,
2 neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to PhosphoSitePlus ,
Specific Peptides from DME ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec ,
Cloud-Clone Corp. ,
eBioscience ,
antibodies-online , and/or
GeneTex ,
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences ,
Cloud-Clone Corp. ,
eBioscience , and/or
antibodies-online ,
Antibodies by
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam ,
Cloud-Clone Corp ,
antibodies-online ,
and/or others.)
About This Section
UniProtKB/TrEMBL: M0R242 See
protein sequence )Recommended Name: Size : 135 amino acids; 15572 DaCaution : The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be consideredas preliminary data
ENSEMBL proteins: ENSP00000472299 TRMT112P6 Human Recombinant
Protein Products: TRMT112P6 Antibody
Products: TRMT112P6 Assay Products:
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Domains /for TRMT112P6 gene (According to HGNC , IUPHAR , InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GenesLikeMe )
About This Section
1 InterPro protein domain :
Graphical View of Domain Structure for InterPro Entry M0R242 ProtoNet protein and cluster: M0R242
Find genes that share domains with TRMT112P6
About GenesLikeMe
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Functionfor TRMT112P6 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
genOway ,
QIAGEN
and/or HOMER ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
SwitchGear Genomics ,
Gene Editing from DNA2.0 ,
Clones from OriGene ,
GenScript ,
Sino Biological ,
DNA2.0 ,
Vector BioLabs
and/or Addgene ,
Cell Lines from GenScript ,
ESI BIO ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Flow cytometry from eBioscience ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene ,
Sets of similar genes according to GenesLikeMe )
About This Section
Animal Models: Inhib. RNA Browse OriGene RNAi Predesigned siRNA for gene silencing in human mouse rat
Cell Line GenScript Custom overexpressing Cell Line Services for TRMT112P6 Browse ESI BIO Cell Lines and PureStem Progenitors for TRMT112P6 In Situ AssayAdvanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRMT112P6
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Localizationfor TRMT112P6 gene
(According to UniProtKB , COMPARTMENTS Subcellular localization database ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene ,
Sets of similar genes according to GenesLikeMe )
About This Section
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Pathways & Interactionsfor TRMT112P6 gene
(SuperPaths according to PathCards ,
Pathways according to
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Sino Biological ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GenesLikeMe ,
Interaction Networks according to
QIAGEN ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene ,
Sets of similar genes according to GenesLikeMe )
About This Section
Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TRMT112P6 Interactions: Search GeneGlobe Interaction Network for TRMT112P6
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Drugs & Compoundsfor TRMT112P6 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience ,
ApexBio ,
HMDB ,
BitterDB , and/or
Novoseek ,
Ligands according to IUPHAR ,
and Drugs according to DrugBank ,
Enzo Life Sciences , and/or
PharmGKB ,
Sets of similar genes according to GenesLikeMe )
About This Section
Browse compounds at ApexBio Browse Tocris compounds for TRMT112P6
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Transcriptsfor TRMT112P6 gene (Secondary structures according to
fRNAdb ,Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank , Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC , GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
SwitchGear Genomics ,
OriGene ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
and/or Addgene ,
Primers from
OriGene , and/or
QIAGEN ,
Flow cytometry from eBioscience
)About This Section
1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000599234 Inhib. RNA Browse OriGene RNAi Predesigned siRNA for gene silencing in human mouse rat
3 AceView cDNA sequences :
AA505307 BI495114 AA430529 GeneLoc Exon Structure
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Expression for TRMT112P6 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GenesLikeMe ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
Protein expression images according to data from SPIRE 1 MOPED ,
2 PaxDb , and 3 MaxQB ,
plus additional links to
SOURCE , and/or
BioGPS , and/or
UniProtKB ,QIAGEN ,
Primers from
OriGene , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section
See probesets specificity/sensitivity at GeneAnnot CGAP TAG: -- TRMT112P6 Protein expression data from MOPED1 2 3 : Custom PCR Arrays for TRMT112P6 Primer Browse OriGene qPCR Search Pre-validated RT2 qPCR
Primer Assays in human, mouse, rat TRMT112P6 QuantiTect SYBR Green Assays in human mouse rat QuantiFast Probe-based Assays in human mouse rat In Situ Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRMT112P6
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Orthologsfor TRMT112P6 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
Orthologs for TRMT112P6 gene from Selected species (see all 10 ) About this table
Organism
Taxonomic
Gene
Description
Human
Orthology
Details
mouse Mammalia Trmt112-ps25
predicted gene 13072
--
4 (79.43 cM) 149457329
lizard Reptilia --
Uncharacterized protein
62(a)
1 → many
AAWZ02036029(7174-16443)
zebrafish Actinopterygii trmt1126
tRNA methyltransferase 11-2 homolog (S. cerevisiae... 59(a)
1 → many
14(8777068-8785232) ENSDARG00000071878
fruit fly Insecta CG129756
--
48(a)
1 → many
3L(21209095-21209939)
worm Secernentea C04H5.16
Protein C04H5.1 (C04H5.1) mRNA, complete cds
34(a)
1 → many
II(14534298-14535266) WBGene00007312
baker's yeast Saccharomycetes TRM1126
Subunit of tRNA methyltransferase (MTase) complexe... 28(a)
1 → many
XIV(707788-708195) YNR046W
ENSEMBL Gene Tree for TRMT112P6 (if available)TreeFam Gene Tree for TRMT112P6 (if available)
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Paralogsfor TRMT112P6 gene (Paralogs according to
1 HomoloGene ,2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68,Sets of similar genes according to GenesLikeMe )About This Section
Paralogs for TRMT112P6 gene TRMT112 2
Find genes that share paralogs with TRMT112P6
About GenesLikeMe
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Genomic Variantsfor TRMT112P6 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
4 UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) , the Human Cytochrome P450 Allele
Nomenclature Database , and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN )
About This Section
Site Specific Mutation Identification with PCR Assays
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Disorders
/ Diseasesfor TRMT112P6 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB ,
Sets of similar genes according to GenesLikeMe )
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Publicationsfor TRMT112P6 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section
--
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External Searches for TRMT112P6 gene (in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TRMT112P6 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing TRMT112P6 gene
(According to HUGE )
About This Section --
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Specialized Databases showing TRMT112P6 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , UniProtKB/TrEMBL , and/or others, e.g. Wikipedia and GeneReviews , via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for TRMT112P6 gene: TRMT112P6 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TRMT112P6 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Cloud-Clone Corp. , Thermo Fisher Scientific , eBioscience , antibodies-online , GeneTex , and/or others, Gene Editing from DNA2.0 . Clones from OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Addgene , Cell lines from GenScript , and ESI BIO , Flow cytometery from eBioscience , PCR Arrays from QIAGEN , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , Enzo Life Sciences , and/or
ApexBio , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from genOway )About This Section
Block miRNA regulation of human, mouse, rat TRMT112P6 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing TRMT112P6 DNA Methylation CpG Assay Predesigned for Pyrosequencing in human mouse rat Predesigned siRNA for gene silencing in human mouse rat QuantiFast Probe-based Assays in human mouse rat QuantiTect SYBR Green Assays in human mouse rat Custom PCR Arrays for TRMT112P6 Search Chromatin IP Primers for TRMT112P6 Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat TRMT112P6 Search GeneGlobe Interaction Network for TRMT112P6 Search Regulatory tfbs for TRMT112P6
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRMT112P6
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat TRMT112P6
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