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Aliases for TRM-CAT6-1 Gene

Subcategory (RNA class) for TRM-CAT6-1 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRM-CAT6-1 Gene

  • Transfer RNA-Met (CAT) 6-1 2 3
  • Transfer RNA Methionine 13 (Anticodon CAU) 2 3
  • TRNA-Met-CAT-6-1 3
  • TRNAM13 3

External Ids for TRM-CAT6-1 Gene

ORGUL Members for TRM-CAT6-1 Gene

Previous HGNC Symbols for TRM-CAT6-1 Gene

  • TRNAM13

Summaries for TRM-CAT6-1 Gene

GeneCards Summary for TRM-CAT6-1 Gene

TRM-CAT6-1 (Transfer RNA-Met (CAT) 6-1) is an RNA Gene, and is affiliated with the tRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRM-CAT6-1 Gene

Genomics for TRM-CAT6-1 Gene

Regulatory Elements for TRM-CAT6-1 Gene

Enhancers for TRM-CAT6-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F087385 0.2 ENCODE 0.8 -1.6 -1619 0.0 GC16M087385 TRM-CAT6-1 FBXO31
GH16F087386 0.6 ENCODE 0.8 -3.9 -3945 4.0 PKNOX1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9 ZNF416 FBXO31 GC16M087385 TRM-CAT6-1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRM-CAT6-1 on UCSC Golden Path with GeneCards custom track

Promoters for TRM-CAT6-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001803832 494 3201 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for TRM-CAT6-1 Gene

Chromosome:
16
Start:
87,384,022 bp from pter
End:
87,384,094 bp from pter
Size:
73 bases
Orientation:
Minus strand

Genomic View for TRM-CAT6-1 Gene

Genes around TRM-CAT6-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRM-CAT6-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRM-CAT6-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRM-CAT6-1 Gene

Proteins for TRM-CAT6-1 Gene

Post-translational modifications for TRM-CAT6-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRM-CAT6-1 Gene

Domains & Families for TRM-CAT6-1 Gene

Gene Families for TRM-CAT6-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRM-CAT6-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRM-CAT6-1 Gene

Function for TRM-CAT6-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRM-CAT6-1 Gene

Localization for TRM-CAT6-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRM-CAT6-1 Gene

Pathways & Interactions for TRM-CAT6-1 Gene

SuperPathways for TRM-CAT6-1 Gene

No Data Available

Interacting Proteins for TRM-CAT6-1 Gene

Gene Ontology (GO) - Biological Process for TRM-CAT6-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRM-CAT6-1 Gene

Transcripts for TRM-CAT6-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRM-CAT6-1 Gene

No ASD Table

Relevant External Links for TRM-CAT6-1 Gene

GeneLoc Exon Structure for
TRM-CAT6-1
ECgene alternative splicing isoforms for
TRM-CAT6-1

No data available for mRNA/cDNA for TRM-CAT6-1 Gene

Expression for TRM-CAT6-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRM-CAT6-1 Gene

Orthologs for TRM-CAT6-1 Gene

No data available for Orthologs and Evolution for TRM-CAT6-1 Gene

Paralogs for TRM-CAT6-1 Gene

No data available for Paralogs for TRM-CAT6-1 Gene

Variants for TRM-CAT6-1 Gene

Relevant External Links for TRM-CAT6-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRM-CAT6-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRM-CAT6-1 Gene

Disorders for TRM-CAT6-1 Gene

No disorders were found for TRM-CAT6-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRM-CAT6-1 Gene

Publications for TRM-CAT6-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRM-CAT6-1 Gene

Sources for TRM-CAT6-1 Gene

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