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Aliases for TRM-CAT4-2 Gene

Subcategory (RNA class) for TRM-CAT4-2 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRM-CAT4-2 Gene

  • Transfer RNA-Met (CAT) 4-2 2 3
  • Transfer RNA Methionine 19 (Anticodon CAU) 2 3
  • TRNA-Met-CAT-4-2 3
  • TRNAM19 3

External Ids for TRM-CAT4-2 Gene

ORGUL Members for TRM-CAT4-2 Gene

Previous HGNC Symbols for TRM-CAT4-2 Gene

  • TRNAM19

Summaries for TRM-CAT4-2 Gene

GeneCards Summary for TRM-CAT4-2 Gene

TRM-CAT4-2 (Transfer RNA-Met (CAT) 4-2) is an RNA Gene, and is affiliated with the tRNA class.

Additional gene information for TRM-CAT4-2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRM-CAT4-2 Gene

Genomics for TRM-CAT4-2 Gene

GeneHancer (GH) Regulatory Elements for TRM-CAT4-2 Gene

Promoters and enhancers for TRM-CAT4-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I026743 Enhancer 1.1 Ensembl ENCODE 550.8 +0.2 208 0.7 ATF1 ARNT DEAF1 ZBTB40 ZEB1 GTF3C2 GLIS2 ZNF366 POLR3A FOS TRM-CAT4-2 LOC102724851 ZNF322 ABT1 GC06M026749
GH06I026744 Enhancer 0.8 Ensembl 550.8 +1.9 1851 0.6 HDAC1 PKNOX1 ARNT ZNF335 TCF12 ATF7 NCOA1 REST ZEB2 MTA1 TRM-CAT4-2 LOC102724851 GC06M026749
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRM-CAT4-2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRM-CAT4-2 Gene

Genomic Locations for TRM-CAT4-2 Gene
chr6:26,743,263-26,743,335
(GRCh38/hg38)
Size:
73 bases
Orientation:
Plus strand
chr6:26,758,550-26,758,622
(GRCh37/hg19)

Genomic View for TRM-CAT4-2 Gene

Genes around TRM-CAT4-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRM-CAT4-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRM-CAT4-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRM-CAT4-2 Gene

Proteins for TRM-CAT4-2 Gene

Post-translational modifications for TRM-CAT4-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRM-CAT4-2 Gene

Domains & Families for TRM-CAT4-2 Gene

Gene Families for TRM-CAT4-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRM-CAT4-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRM-CAT4-2 Gene

Function for TRM-CAT4-2 Gene

Phenotypes From GWAS Catalog for TRM-CAT4-2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRM-CAT4-2 Gene

Localization for TRM-CAT4-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRM-CAT4-2 Gene

Pathways & Interactions for TRM-CAT4-2 Gene

SuperPathways for TRM-CAT4-2 Gene

No Data Available

Interacting Proteins for TRM-CAT4-2 Gene

Gene Ontology (GO) - Biological Process for TRM-CAT4-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRM-CAT4-2 Gene

Drugs & Compounds for TRM-CAT4-2 Gene

No Compound Related Data Available

Transcripts for TRM-CAT4-2 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRM-CAT4-2 Gene

No ASD Table

Relevant External Links for TRM-CAT4-2 Gene

GeneLoc Exon Structure for
TRM-CAT4-2
ECgene alternative splicing isoforms for
TRM-CAT4-2

No data available for mRNA/cDNA for TRM-CAT4-2 Gene

Expression for TRM-CAT4-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRM-CAT4-2 Gene

Orthologs for TRM-CAT4-2 Gene

No data available for Orthologs and Evolution for TRM-CAT4-2 Gene

Paralogs for TRM-CAT4-2 Gene

No data available for Paralogs for TRM-CAT4-2 Gene

Variants for TRM-CAT4-2 Gene

Additional Variant Information for TRM-CAT4-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRM-CAT4-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRM-CAT4-2 Gene

Disorders for TRM-CAT4-2 Gene

No disorders were found for TRM-CAT4-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRM-CAT4-2 Gene

Publications for TRM-CAT4-2 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58

Products for TRM-CAT4-2 Gene

Sources for TRM-CAT4-2 Gene

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