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Aliases for TRM-CAT3-2 Gene

Subcategory (RNA class) for TRM-CAT3-2 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRM-CAT3-2 Gene

  • Transfer RNA-Met (CAT) 3-2 2 3
  • Transfer RNA Methionine 8 (Anticodon CAU) 2 3
  • TRNA-Met-CAT-3-2 3
  • TRNAM8 3

External Ids for TRM-CAT3-2 Gene

ORGUL Members for TRM-CAT3-2 Gene

Previous HGNC Symbols for TRM-CAT3-2 Gene

  • TRNAM8

Summaries for TRM-CAT3-2 Gene

GeneCards Summary for TRM-CAT3-2 Gene

TRM-CAT3-2 (Transfer RNA-Met (CAT) 3-2) is an RNA Gene, and is affiliated with the tRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRM-CAT3-2 Gene

Genomics for TRM-CAT3-2 Gene

Regulatory Elements for TRM-CAT3-2 Gene

Enhancers for TRM-CAT3-2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G028952 1.6 Ensembl ENCODE dbSUPER 0.7 -0.3 -301 1.9 FOXA2 PKNOX1 ARNT SIN3A ARID4B ZNF2 YY1 ZNF766 CBX5 FOS TRIM27 ZKSCAN3 RPL23AP1 IFITM4P ENSG00000244349 HCG15 ZKSCAN4 ZKSCAN8 HCG14 HLA-F-AS1
GH06G028950 1.3 Ensembl ENCODE 0.7 +2.2 2153 0.8 MLX ARNT ARID4B SIN3A ZNF2 ZNF143 FOS DEK MXD4 NFYC TRIM27 ZKSCAN3 ENSG00000244349 HCG15 ZKSCAN4 ZKSCAN8 HCG14 LINC01556 TRK-TTT3-3 TRM-CAT3-2
GH06G028954 1.1 dbSUPER 0.7 -2.7 -2655 2.0 HDGF HNRNPUL1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 TRIM27 ZKSCAN3 ZSCAN9 ZFP57 ZKSCAN4 ENSG00000244349 HCG15 HCG14 ZKSCAN8 ZNF311
GH06G028960 1 dbSUPER 0.4 -7.6 -7612 1.8 HDGF ATF1 PKNOX1 CREB3L1 ARNT TCF12 ZNF766 JUNB NCOA1 REST TRIM27 RPL23AP1 IFITM4P HLA-F-AS1 ENSG00000272236 HCG9P5 ZFP57 HCG4P7 LINC01556 ZNF602P
GH06G028953 0.5 ENCODE dbSUPER 0.7 +0.9 856 0.3 TRIM27 ENSG00000244349 HCG15 HCG14 TRK-TTT3-3 TRM-CAT3-2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRM-CAT3-2 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRM-CAT3-2 Gene

Chromosome:
6
Start:
28,953,265 bp from pter
End:
28,953,337 bp from pter
Size:
73 bases
Orientation:
Minus strand

Genomic View for TRM-CAT3-2 Gene

Genes around TRM-CAT3-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRM-CAT3-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRM-CAT3-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for TRM-CAT3-2 Gene

Post-translational modifications for TRM-CAT3-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRM-CAT3-2 Gene

Domains & Families for TRM-CAT3-2 Gene

Gene Families for TRM-CAT3-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRM-CAT3-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRM-CAT3-2 Gene

Function for TRM-CAT3-2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRM-CAT3-2 Gene

Localization for TRM-CAT3-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRM-CAT3-2 Gene

Pathways & Interactions for TRM-CAT3-2 Gene

SuperPathways for TRM-CAT3-2 Gene

No Data Available

Interacting Proteins for TRM-CAT3-2 Gene

Gene Ontology (GO) - Biological Process for TRM-CAT3-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRM-CAT3-2 Gene

Drugs & Compounds for TRM-CAT3-2 Gene

No Compound Related Data Available

Transcripts for TRM-CAT3-2 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRM-CAT3-2 Gene

No ASD Table

Relevant External Links for TRM-CAT3-2 Gene

GeneLoc Exon Structure for
TRM-CAT3-2
ECgene alternative splicing isoforms for
TRM-CAT3-2

No data available for mRNA/cDNA for TRM-CAT3-2 Gene

Expression for TRM-CAT3-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRM-CAT3-2 Gene

Orthologs for TRM-CAT3-2 Gene

No data available for Orthologs and Evolution for TRM-CAT3-2 Gene

Paralogs for TRM-CAT3-2 Gene

No data available for Paralogs for TRM-CAT3-2 Gene

Variants for TRM-CAT3-2 Gene

Relevant External Links for TRM-CAT3-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRM-CAT3-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRM-CAT3-2 Gene

Disorders for TRM-CAT3-2 Gene

No disorders were found for TRM-CAT3-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRM-CAT3-2 Gene

Publications for TRM-CAT3-2 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRM-CAT3-2 Gene

Sources for TRM-CAT3-2 Gene

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