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Aliases for TRM-CAT3-2 Gene

Subcategory (RNA class) for TRM-CAT3-2 Gene

tRNA

Quality Score for this RNA gene is

2

Aliases for TRM-CAT3-2 Gene

  • Transfer RNA-Met (CAT) 3-2 2 3
  • Transfer RNA Methionine 8 (Anticodon CAU) 2 3
  • TRNA-Met-CAT-3-2 3
  • TRNAM8 3

External Ids for TRM-CAT3-2 Gene

ORGUL Members for TRM-CAT3-2 Gene

Previous HGNC Symbols for TRM-CAT3-2 Gene

  • TRNAM8

Summaries for TRM-CAT3-2 Gene

GeneCards Summary for TRM-CAT3-2 Gene

TRM-CAT3-2 (Transfer RNA-Met (CAT) 3-2) is an RNA Gene, and is affiliated with the tRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRM-CAT3-2 Gene

Genomics for TRM-CAT3-2 Gene

Regulatory Elements for TRM-CAT3-2 Gene

Enhancers for TRM-CAT3-2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F028953 1.2 Ensembl ENCODE 0.8 -0.4 -401 2.1 PKNOX1 ARNT SIN3A ARID4B ZNF2 YY1 CBX5 FOS KLF13 PAF1 TRIM27 ZKSCAN8 ZKSCAN3 HCG15 HCG16 ZKSCAN4 HCG14 ZNF602P ZFP57 HCG4P7
GH06F028950 1 Ensembl ENCODE 0.8 +2.2 2246 1.0 ARNT MLX ARID4B SIN3A ZNF2 GTF3C2 ZNF143 FOS DEK NFYC TRIM27 ZKSCAN8 ZKSCAN3 HCG16 HCG15 ZKSCAN4 HCG14 LINC01556 TRK-TTT3-3 TRM-CAT3-2
GH06F028952 1.1 ENCODE 0.8 +0.9 856 0.3 TRIM27 HCG15 HCG16 HCG14 TRK-TTT3-3 TRM-CAT3-2
GH06F028951 0.2 ENCODE 0.8 +1.4 1399 0.1 BCOR ZBTB33 HCG15 HCG16 TRIM27 HCG14 TRK-TTT3-3 TRM-CAT3-2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRM-CAT3-2 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRM-CAT3-2 Gene

Chromosome:
6
Start:
28,953,265 bp from pter
End:
28,953,337 bp from pter
Size:
73 bases
Orientation:
Minus strand

Genomic View for TRM-CAT3-2 Gene

Genes around TRM-CAT3-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRM-CAT3-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRM-CAT3-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for TRM-CAT3-2 Gene

Post-translational modifications for TRM-CAT3-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRM-CAT3-2 Gene

Domains & Families for TRM-CAT3-2 Gene

Gene Families for TRM-CAT3-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRM-CAT3-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRM-CAT3-2 Gene

Function for TRM-CAT3-2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRM-CAT3-2 Gene

Localization for TRM-CAT3-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRM-CAT3-2 Gene

Pathways & Interactions for TRM-CAT3-2 Gene

SuperPathways for TRM-CAT3-2 Gene

No Data Available

Interacting Proteins for TRM-CAT3-2 Gene

Gene Ontology (GO) - Biological Process for TRM-CAT3-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRM-CAT3-2 Gene

Transcripts for TRM-CAT3-2 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRM-CAT3-2 Gene

No ASD Table

Relevant External Links for TRM-CAT3-2 Gene

GeneLoc Exon Structure for
TRM-CAT3-2
ECgene alternative splicing isoforms for
TRM-CAT3-2

No data available for mRNA/cDNA for TRM-CAT3-2 Gene

Expression for TRM-CAT3-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRM-CAT3-2 Gene

Orthologs for TRM-CAT3-2 Gene

No data available for Orthologs and Evolution for TRM-CAT3-2 Gene

Paralogs for TRM-CAT3-2 Gene

No data available for Paralogs for TRM-CAT3-2 Gene

Variants for TRM-CAT3-2 Gene

Relevant External Links for TRM-CAT3-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRM-CAT3-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRM-CAT3-2 Gene

Disorders for TRM-CAT3-2 Gene

No disorders were found for TRM-CAT3-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRM-CAT3-2 Gene

Publications for TRM-CAT3-2 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRM-CAT3-2 Gene

Sources for TRM-CAT3-2 Gene

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