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Aliases for TRM-CAT1-1 Gene

Subcategory (RNA class) for TRM-CAT1-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRM-CAT1-1 Gene

  • Transfer RNA-Met (CAT) 1-1 2 3
  • Transfer RNA Methionine 11 (Anticodon CAU) 2 3
  • TRNA-Met-CAT-1-1 3
  • TRNAM11 3

External Ids for TRM-CAT1-1 Gene

Previous HGNC Symbols for TRM-CAT1-1 Gene

  • TRNAM11

Summaries for TRM-CAT1-1 Gene

GeneCards Summary for TRM-CAT1-1 Gene

TRM-CAT1-1 (Transfer RNA-Met (CAT) 1-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRM-CAT1-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRM-CAT1-1 Gene

Genomics for TRM-CAT1-1 Gene

Regulatory Elements for TRM-CAT1-1 Gene

Enhancers for TRM-CAT1-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H123155 1.7 Ensembl ENCODE dbSUPER 0.7 -0.2 -210 3.8 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 PPARGC1A SSRP1 GLIS1 NBN NR2C1 FAM91A1 DERL1 LOC105375738 ENSG00000254249 FER1L6-AS1 LOC392268 ENSG00000254000 ARF1P3 FAM83A C8orf76
GH08H123160 1.4 Ensembl ENCODE dbSUPER 0.7 -3.7 -3672 1.8 HDGF RB1 ARID4B SIN3A DMAP1 RAD21 RFX5 ZNF207 ZNF143 CREM FAM83A FAM83A-AS1 TRM-CAT1-1
GH08H123165 1.6 Ensembl ENCODE dbSUPER 0.4 -10.2 -10166 3.5 HDGF FOXA2 PKNOX1 ARNT ARID4B SIN3A DMAP1 YY1 ZNF766 FOS WDYHV1 FAM83A-AS1 TRM-CAT1-1 FAM83A
GH08H123172 1 ENCODE dbSUPER 0.4 -15.1 -15144 0.5 BCOR HDGF TBP SUZ12 ZBTB40 MTA3 ZNF316 POLR3A TRIM24 SMARCA5 FAM83A TRM-CAT1-1
GH08H123174 0.9 ENCODE dbSUPER 0.4 -17.3 -17327 1.1 TBP STAT1 MAX NR3C1 ZNF592 POLR2A FOS E2F6 NFE2L2 CHD2 FAM83A TRM-CAT1-1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRM-CAT1-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRM-CAT1-1 Gene

Genomic Locations for TRM-CAT1-1 Gene
chr8:123,157,230-123,157,302
(GRCh38/hg38)
Size:
73 bases
Orientation:
Minus strand
chr8:124,169,470-124,169,542
(GRCh37/hg19)

Genomic View for TRM-CAT1-1 Gene

Genes around TRM-CAT1-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRM-CAT1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRM-CAT1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRM-CAT1-1 Gene

Proteins for TRM-CAT1-1 Gene

Post-translational modifications for TRM-CAT1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRM-CAT1-1 Gene

Domains & Families for TRM-CAT1-1 Gene

Gene Families for TRM-CAT1-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRM-CAT1-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRM-CAT1-1 Gene

Function for TRM-CAT1-1 Gene

Phenotypes From GWAS Catalog for TRM-CAT1-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRM-CAT1-1 Gene

Localization for TRM-CAT1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRM-CAT1-1 Gene

Pathways & Interactions for TRM-CAT1-1 Gene

SuperPathways for TRM-CAT1-1 Gene

No Data Available

Interacting Proteins for TRM-CAT1-1 Gene

Gene Ontology (GO) - Biological Process for TRM-CAT1-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRM-CAT1-1 Gene

Drugs & Compounds for TRM-CAT1-1 Gene

No Compound Related Data Available

Transcripts for TRM-CAT1-1 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRM-CAT1-1 Gene

No ASD Table

Relevant External Links for TRM-CAT1-1 Gene

GeneLoc Exon Structure for
TRM-CAT1-1
ECgene alternative splicing isoforms for
TRM-CAT1-1

No data available for mRNA/cDNA for TRM-CAT1-1 Gene

Expression for TRM-CAT1-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRM-CAT1-1 Gene

Orthologs for TRM-CAT1-1 Gene

No data available for Orthologs and Evolution for TRM-CAT1-1 Gene

Paralogs for TRM-CAT1-1 Gene

No data available for Paralogs for TRM-CAT1-1 Gene

Variants for TRM-CAT1-1 Gene

Relevant External Links for TRM-CAT1-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRM-CAT1-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRM-CAT1-1 Gene

Disorders for TRM-CAT1-1 Gene

No disorders were found for TRM-CAT1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRM-CAT1-1 Gene

Publications for TRM-CAT1-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 60

Products for TRM-CAT1-1 Gene

Sources for TRM-CAT1-1 Gene

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