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Aliases for TRM-CAT1-1 Gene

Subcategory (RNA class) for TRM-CAT1-1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRM-CAT1-1 Gene

  • Transfer RNA-Met (CAT) 1-1 2 3
  • Transfer RNA Methionine 11 (Anticodon CAU) 2 3
  • TRNA-Met-CAT-1-1 3
  • TRNAM11 3

External Ids for TRM-CAT1-1 Gene

Previous HGNC Symbols for TRM-CAT1-1 Gene

  • TRNAM11

Summaries for TRM-CAT1-1 Gene

GeneCards Summary for TRM-CAT1-1 Gene

TRM-CAT1-1 (Transfer RNA-Met (CAT) 1-1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRM-CAT1-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRM-CAT1-1 Gene

Genomics for TRM-CAT1-1 Gene

GeneHancer (GH) Regulatory Elements for TRM-CAT1-1 Gene

Promoters and enhancers for TRM-CAT1-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I123155 Enhancer 1.5 Ensembl ENCODE dbSUPER 550.8 -0.2 -210 3.8 CLOCK DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 PPARGC1A PIR54534 TRM-CAT1-1 FAM91A1 DERL1 FAM83A C8orf76 FAM83A-AS1 TBC1D31
GH08I123160 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.8 -3.7 -3671 1.8 HDGF RB1 ARID4B SIN3A DMAP1 KLF5 ZNF48 RAD21 RFX5 ZNF207 FAM83A FAM83A-AS1 TRM-CAT1-1 TBC1D31
GH08I123165 Enhancer 1.5 Ensembl ENCODE dbSUPER 0.4 -10.2 -10166 3.5 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B ZNF766 WDYHV1 FAM83A-AS1 TRM-CAT1-1 FAM83A
GH08I123172 Enhancer 0.9 ENCODE dbSUPER 0.4 -15.1 -15144 0.5 BCOR HDGF SUZ12 ZBTB40 MTA3 ZNF316 POLR3A TRIM24 SMARCA5 ZBTB2 FAM83A TRM-CAT1-1
GH08I123174 Enhancer 0.8 ENCODE dbSUPER 0.4 -17.3 -17326 1.1 STAT1 MAX ZNF592 ZNF512B POLR2A FOS E2F6 NFE2L2 CHD2 FAM83A TRM-CAT1-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRM-CAT1-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRM-CAT1-1 Gene

Genomic Locations for TRM-CAT1-1 Gene
chr8:123,157,230-123,157,302
(GRCh38/hg38)
Size:
73 bases
Orientation:
Minus strand
chr8:124,169,470-124,169,542
(GRCh37/hg19)

Genomic View for TRM-CAT1-1 Gene

Genes around TRM-CAT1-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRM-CAT1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRM-CAT1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRM-CAT1-1 Gene

Proteins for TRM-CAT1-1 Gene

Post-translational modifications for TRM-CAT1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRM-CAT1-1 Gene

Domains & Families for TRM-CAT1-1 Gene

Gene Families for TRM-CAT1-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRM-CAT1-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRM-CAT1-1 Gene

Function for TRM-CAT1-1 Gene

Phenotypes From GWAS Catalog for TRM-CAT1-1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRM-CAT1-1 Gene

Localization for TRM-CAT1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRM-CAT1-1 Gene

Pathways & Interactions for TRM-CAT1-1 Gene

SuperPathways for TRM-CAT1-1 Gene

No Data Available

Interacting Proteins for TRM-CAT1-1 Gene

Gene Ontology (GO) - Biological Process for TRM-CAT1-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRM-CAT1-1 Gene

Drugs & Compounds for TRM-CAT1-1 Gene

No Compound Related Data Available

Transcripts for TRM-CAT1-1 Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRM-CAT1-1 Gene

No ASD Table

Relevant External Links for TRM-CAT1-1 Gene

GeneLoc Exon Structure for
TRM-CAT1-1
ECgene alternative splicing isoforms for
TRM-CAT1-1

No data available for mRNA/cDNA for TRM-CAT1-1 Gene

Expression for TRM-CAT1-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRM-CAT1-1 Gene

Orthologs for TRM-CAT1-1 Gene

No data available for Orthologs and Evolution for TRM-CAT1-1 Gene

Paralogs for TRM-CAT1-1 Gene

No data available for Paralogs for TRM-CAT1-1 Gene

Variants for TRM-CAT1-1 Gene

Additional Variant Information for TRM-CAT1-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRM-CAT1-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRM-CAT1-1 Gene

Disorders for TRM-CAT1-1 Gene

No disorders were found for TRM-CAT1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRM-CAT1-1 Gene

Publications for TRM-CAT1-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58

Products for TRM-CAT1-1 Gene

Sources for TRM-CAT1-1 Gene

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