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Aliases for TRL-CAG2-2 Gene

Subcategory (RNA class) for TRL-CAG2-2 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for TRL-CAG2-2 Gene

  • Transfer RNA-Leu (CAG) 2-2 2 3
  • Transfer RNA Leucine 11 (Anticodon CAG) 2 3
  • TRNA-Leu-CAG-2-2 3
  • TRNAL11 3

External Ids for TRL-CAG2-2 Gene

Previous HGNC Symbols for TRL-CAG2-2 Gene

  • TRNAL11

Summaries for TRL-CAG2-2 Gene

GeneCards Summary for TRL-CAG2-2 Gene

TRL-CAG2-2 (Transfer RNA-Leu (CAG) 2-2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRL-CAG2-2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRL-CAG2-2 Gene

Genomics for TRL-CAG2-2 Gene

Regulatory Elements for TRL-CAG2-2 Gene

Enhancers for TRL-CAG2-2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H057298 1.7 Ensembl ENCODE dbSUPER 0.7 +0.5 483 2 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A PPARGC1A MEF2D SSRP1 RSPRY1 POLR2C CSNK2A2 FAM192A CCL22 CX3CL1 ARL2BP CIAPIN1 COQ9 NUDT21
GH16H057303 1.5 Ensembl ENCODE dbSUPER 0.7 -4.1 -4131 2 FOXA2 ATF1 MLX ZFP64 ARID4B DMAP1 YY1 SLC30A9 ATF7 RUNX3 CCL22 CX3CL1 PLLP ARL2BP TRL-CAG2-2 RPL23AP91
GH16H057315 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -15.9 -15877 2 TBP JUN CEBPG ZIC2 FOSL1 ZNF664 FOS ZNF584 CEBPB EP300 ENSG00000260545 RPL23AP91 TRL-CAG2-2
GH16H057314 1.1 Ensembl ENCODE dbSUPER 0.4 -14.1 -14088 0 JUNB EBF1 BATF EP300 IKZF1 PRDM10 IKZF2 PRDM1 SPI1 RPL23AP91 TRL-CAG2-2
GH16H057306 0.5 dbSUPER 0.4 -6.9 -6895 1 FOXA2 EGR1 SCRT2 TEAD3 CCL22 CX3CL1 PLLP ARL2BP ENSG00000261114 TRL-CAG2-2 RPL23AP91
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRL-CAG2-2 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRL-CAG2-2 Gene

Chromosome:
16
Start:
57,300,480 bp from pter
End:
57,300,562 bp from pter
Size:
83 bases
Orientation:
Minus strand

Genomic View for TRL-CAG2-2 Gene

Genes around TRL-CAG2-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRL-CAG2-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRL-CAG2-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRL-CAG2-2 Gene

Proteins for TRL-CAG2-2 Gene

Post-translational modifications for TRL-CAG2-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRL-CAG2-2 Gene

Domains & Families for TRL-CAG2-2 Gene

Gene Families for TRL-CAG2-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRL-CAG2-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRL-CAG2-2 Gene

Function for TRL-CAG2-2 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRL-CAG2-2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRL-CAG2-2 Gene

Localization for TRL-CAG2-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRL-CAG2-2 Gene

Pathways & Interactions for TRL-CAG2-2 Gene

SuperPathways for TRL-CAG2-2 Gene

No Data Available

Interacting Proteins for TRL-CAG2-2 Gene

Gene Ontology (GO) - Biological Process for TRL-CAG2-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRL-CAG2-2 Gene

Drugs & Compounds for TRL-CAG2-2 Gene

No Compound Related Data Available

Transcripts for TRL-CAG2-2 Gene

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TRL-CAG2-2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TRL-CAG2-2 Gene

No ASD Table

Relevant External Links for TRL-CAG2-2 Gene

GeneLoc Exon Structure for
TRL-CAG2-2
ECgene alternative splicing isoforms for
TRL-CAG2-2

No data available for mRNA/cDNA for TRL-CAG2-2 Gene

Expression for TRL-CAG2-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRL-CAG2-2 Gene

Orthologs for TRL-CAG2-2 Gene

No data available for Orthologs and Evolution for TRL-CAG2-2 Gene

Paralogs for TRL-CAG2-2 Gene

No data available for Paralogs for TRL-CAG2-2 Gene

Variants for TRL-CAG2-2 Gene

Relevant External Links for TRL-CAG2-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRL-CAG2-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRL-CAG2-2 Gene

Disorders for TRL-CAG2-2 Gene

No disorders were found for TRL-CAG2-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRL-CAG2-2 Gene

Publications for TRL-CAG2-2 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 60

Products for TRL-CAG2-2 Gene

Sources for TRL-CAG2-2 Gene

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