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Aliases for TRK-CTT3-1 Gene

Subcategory (RNA class) for TRK-CTT3-1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for TRK-CTT3-1 Gene

  • Transfer RNA-Lys (CTT) 3-1 2 3
  • Transfer RNA Lysine 15 (Anticodon CUU) 2 3
  • TRNA-Lys-CTT-3-1 3
  • RP11-473M20.16 5
  • TRNAK15 3

External Ids for TRK-CTT3-1 Gene

ORGUL Members for TRK-CTT3-1 Gene

Previous HGNC Symbols for TRK-CTT3-1 Gene

  • TRNAK15

Summaries for TRK-CTT3-1 Gene

GeneCards Summary for TRK-CTT3-1 Gene

TRK-CTT3-1 (Transfer RNA-Lys (CTT) 3-1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRK-CTT3-1 Gene

Genomics for TRK-CTT3-1 Gene

Regulatory Elements for TRK-CTT3-1 Gene

Enhancers for TRK-CTT3-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G003156 1.7 FANTOM5 ENCODE dbSUPER 0.7 -1.3 -1311 3.8 CREB3L1 DMAP1 YY1 ZNF263 SP3 NFYC TBX21 MEF2D SSRP1 ZNF610 ZNF213-AS1 ZNF205 CLUAP1 RNPS1 MTCO1P28 ZNF174 ZNF263 MTND1P8 TIGD7 MTRNR2L4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRK-CTT3-1 on UCSC Golden Path with GeneCards custom track

Promoters for TRK-CTT3-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000082613 83 401 ARNT SIN3A ARID4B DMAP1 ZBTB7B FOS KLF13 ZNF263 NFYC ZHX2
ENSR00000279473 -1217 1801 HDGF CREB3L1 ARNT SIN3A ARID4B DMAP1 ZNF2 ZBTB7B YY1 ZNF766

Genomic Location for TRK-CTT3-1 Gene

Chromosome:
16
Start:
3,156,736 bp from pter
End:
3,157,483 bp from pter
Size:
748 bases
Orientation:
Minus strand

Genomic View for TRK-CTT3-1 Gene

Genes around TRK-CTT3-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRK-CTT3-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRK-CTT3-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRK-CTT3-1 Gene

Proteins for TRK-CTT3-1 Gene

Post-translational modifications for TRK-CTT3-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRK-CTT3-1 Gene

Domains & Families for TRK-CTT3-1 Gene

Gene Families for TRK-CTT3-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRK-CTT3-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRK-CTT3-1 Gene

Function for TRK-CTT3-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRK-CTT3-1 Gene

Localization for TRK-CTT3-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRK-CTT3-1 Gene

Pathways & Interactions for TRK-CTT3-1 Gene

SuperPathways for TRK-CTT3-1 Gene

No Data Available

Interacting Proteins for TRK-CTT3-1 Gene

Gene Ontology (GO) - Biological Process for TRK-CTT3-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRK-CTT3-1 Gene

Transcripts for TRK-CTT3-1 Gene

mRNA/cDNA for TRK-CTT3-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRK-CTT3-1 Gene

No ASD Table

Relevant External Links for TRK-CTT3-1 Gene

GeneLoc Exon Structure for
TRK-CTT3-1
ECgene alternative splicing isoforms for
TRK-CTT3-1

Expression for TRK-CTT3-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRK-CTT3-1 Gene

genes like me logo Genes that share expression patterns with TRK-CTT3-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRK-CTT3-1 Gene

Orthologs for TRK-CTT3-1 Gene

Evolution for TRK-CTT3-1 Gene

ENSEMBL:
Gene Tree for TRK-CTT3-1 (if available)
TreeFam:
Gene Tree for TRK-CTT3-1 (if available)

No data available for Orthologs for TRK-CTT3-1 Gene

Paralogs for TRK-CTT3-1 Gene

No data available for Paralogs for TRK-CTT3-1 Gene

Variants for TRK-CTT3-1 Gene

Relevant External Links for TRK-CTT3-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRK-CTT3-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRK-CTT3-1 Gene

Disorders for TRK-CTT3-1 Gene

No disorders were found for TRK-CTT3-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRK-CTT3-1 Gene

Publications for TRK-CTT3-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64

Products for TRK-CTT3-1 Gene

Sources for TRK-CTT3-1 Gene

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