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Aliases for TRK-CTT13-1 Gene

Subcategory (RNA class) for TRK-CTT13-1 Gene

tRNA

Quality Score for this RNA gene is

4

Aliases for TRK-CTT13-1 Gene

  • Transfer RNA-Lys (CTT) 13-1 2 3
  • Transfer RNA Lysine 35 (Anticodon CUU) Pseudogene 2 3
  • TRNA-Lys-CTT-13-1 3
  • TRNAK35P 3

External Ids for TRK-CTT13-1 Gene

ORGUL Members for TRK-CTT13-1 Gene

Previous HGNC Symbols for TRK-CTT13-1 Gene

  • TRNAK35P

Previous GeneCards Identifiers for TRK-CTT13-1 Gene

  • GC01U904398

Summaries for TRK-CTT13-1 Gene

GeneCards Summary for TRK-CTT13-1 Gene

TRK-CTT13-1 (Transfer RNA-Lys (CTT) 13-1) is an RNA Gene, and is affiliated with the tRNA class.

fRNAdb sequence ontologies for TRK-CTT13-1 Gene

  • tRNA: Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRK-CTT13-1 Gene

Genomics for TRK-CTT13-1 Gene

Regulatory Elements for TRK-CTT13-1 Gene

Enhancers for TRK-CTT13-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F165593 0.2 ENCODE 0.8 -3.8 -3785 0.2 CTCF ZNF654 TRIM22 REST ZNF2 RAD21 ZNF121 ZNF143 SMC3 ZNF524 MGST3 RXRG LMX1A TRK-CTT13-1 LOC400794
GH01F165594 0.2 ENCODE 0.8 -1.6 -1592 1.2 MTA2 MGST3 TRK-CTT13-1 LOC400794
GH01F165597 0.2 ENCODE 0.8 +1.5 1519 2.0 HDGF PKNOX1 ATF1 CREB3L1 ARID4B SIN3A GLI4 YY1 GLIS2 FOS ENSG00000236206 LRRC52 MGST3 TRK-CTT13-1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRK-CTT13-1 on UCSC Golden Path with GeneCards custom track

Promoters for TRK-CTT13-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001751176 1387 1001 HDGF PKNOX1 ATF1 CREB3L1 ARID4B SIN3A GLI4 GLIS2 FOS SP3

Genomic Location for TRK-CTT13-1 Gene

Chromosome:
1
Start:
165,596,913 bp from pter
End:
165,596,985 bp from pter
Size:
73 bases
Orientation:
Plus strand

Genomic View for TRK-CTT13-1 Gene

Genes around TRK-CTT13-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRK-CTT13-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRK-CTT13-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRK-CTT13-1 Gene

ORGUL Member Location for TRK-CTT13-1 Gene

ORGUL Member Location for TRK-CTT13-1 gene

Proteins for TRK-CTT13-1 Gene

Post-translational modifications for TRK-CTT13-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRK-CTT13-1 Gene

Domains & Families for TRK-CTT13-1 Gene

Gene Families for TRK-CTT13-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRK-CTT13-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRK-CTT13-1 Gene

Function for TRK-CTT13-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRK-CTT13-1 Gene

Localization for TRK-CTT13-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRK-CTT13-1 Gene

Pathways & Interactions for TRK-CTT13-1 Gene

SuperPathways for TRK-CTT13-1 Gene

No Data Available

Interacting Proteins for TRK-CTT13-1 Gene

Gene Ontology (GO) - Biological Process for TRK-CTT13-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRK-CTT13-1 Gene

Transcripts for TRK-CTT13-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRK-CTT13-1 Gene

No ASD Table

Relevant External Links for TRK-CTT13-1 Gene

GeneLoc Exon Structure for
TRK-CTT13-1
ECgene alternative splicing isoforms for
TRK-CTT13-1

No data available for mRNA/cDNA for TRK-CTT13-1 Gene

Expression for TRK-CTT13-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRK-CTT13-1 Gene

Orthologs for TRK-CTT13-1 Gene

No data available for Orthologs and Evolution for TRK-CTT13-1 Gene

Paralogs for TRK-CTT13-1 Gene

No data available for Paralogs for TRK-CTT13-1 Gene

Variants for TRK-CTT13-1 Gene

Relevant External Links for TRK-CTT13-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRK-CTT13-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRK-CTT13-1 Gene

Disorders for TRK-CTT13-1 Gene

No disorders were found for TRK-CTT13-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRK-CTT13-1 Gene

Publications for TRK-CTT13-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64
  2. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. (PMID: 9023104) Lowe T.M. … Eddy S.R. (Nucleic Acids Res. 1997) 1
  3. The tertiary structure of tRNA and the development of the genetic code. (PMID: 8256282) Hou Y.M. (Trends Biochem. Sci. 1993) 1

Products for TRK-CTT13-1 Gene

Sources for TRK-CTT13-1 Gene

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