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Aliases for TRK-CTT13-1 Gene

Subcategory (RNA class) for TRK-CTT13-1 Gene


Quality Score for this RNA gene is


Aliases for TRK-CTT13-1 Gene

  • Transfer RNA-Lys (CTT) 13-1 2 3
  • Transfer RNA Lysine 35 (Anticodon CUU) Pseudogene 2 3
  • TRNA-Lys-CTT-13-1 3
  • TRNAK35P 3

External Ids for TRK-CTT13-1 Gene

ORGUL Members for TRK-CTT13-1 Gene

Previous HGNC Symbols for TRK-CTT13-1 Gene

  • TRNAK35P

Previous GeneCards Identifiers for TRK-CTT13-1 Gene

  • GC01U904398

Summaries for TRK-CTT13-1 Gene

GeneCards Summary for TRK-CTT13-1 Gene

TRK-CTT13-1 (Transfer RNA-Lys (CTT) 13-1) is an RNA Gene, and is affiliated with the tRNA class.

fRNAdb sequence ontologies for TRK-CTT13-1 Gene

  • tRNA: Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for TRK-CTT13-1 Gene

Genomics for TRK-CTT13-1 Gene

Regulatory Elements for TRK-CTT13-1 Gene

Enhancers for TRK-CTT13-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F165593 0.2 ENCODE 0.8 -3.8 -3785 0.2 CTCF ZNF654 TRIM22 REST ZNF2 RAD21 ZNF121 ZNF143 SMC3 ZNF524 MGST3 RXRG LMX1A TRK-CTT13-1 LOC400794
GH01F165594 0.2 ENCODE 0.8 -1.6 -1592 1.2 MTA2 MGST3 TRK-CTT13-1 LOC400794
GH01F165597 0.2 ENCODE 0.8 +1.5 1519 2.0 HDGF PKNOX1 ATF1 CREB3L1 ARID4B SIN3A GLI4 YY1 GLIS2 FOS ENSG00000236206 LRRC52 MGST3 TRK-CTT13-1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TRK-CTT13-1 on UCSC Golden Path with GeneCards custom track

Promoters for TRK-CTT13-1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for TRK-CTT13-1 Gene

165,596,913 bp from pter
165,596,985 bp from pter
73 bases
Plus strand

Genomic View for TRK-CTT13-1 Gene

Genes around TRK-CTT13-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRK-CTT13-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRK-CTT13-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRK-CTT13-1 Gene

ORGUL Member Location for TRK-CTT13-1 Gene

ORGUL Member Location for TRK-CTT13-1 gene

Proteins for TRK-CTT13-1 Gene

Post-translational modifications for TRK-CTT13-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRK-CTT13-1 Gene

Domains & Families for TRK-CTT13-1 Gene

Gene Families for TRK-CTT13-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRK-CTT13-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRK-CTT13-1 Gene

Function for TRK-CTT13-1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRK-CTT13-1 Gene

Localization for TRK-CTT13-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRK-CTT13-1 Gene

Pathways & Interactions for TRK-CTT13-1 Gene

SuperPathways for TRK-CTT13-1 Gene

No Data Available

Interacting Proteins for TRK-CTT13-1 Gene

Gene Ontology (GO) - Biological Process for TRK-CTT13-1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TRK-CTT13-1 Gene

Transcripts for TRK-CTT13-1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for TRK-CTT13-1 Gene

No ASD Table

Relevant External Links for TRK-CTT13-1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

No data available for mRNA/cDNA for TRK-CTT13-1 Gene

Expression for TRK-CTT13-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRK-CTT13-1 Gene

Orthologs for TRK-CTT13-1 Gene

No data available for Orthologs and Evolution for TRK-CTT13-1 Gene

Paralogs for TRK-CTT13-1 Gene

No data available for Paralogs for TRK-CTT13-1 Gene

Variants for TRK-CTT13-1 Gene

Relevant External Links for TRK-CTT13-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TRK-CTT13-1 Gene

Disorders for TRK-CTT13-1 Gene

No disorders were found for TRK-CTT13-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TRK-CTT13-1 Gene

Publications for TRK-CTT13-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan P.P. … Lowe T.M. (Nucleic Acids Res. 2009) 3 64
  2. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. (PMID: 9023104) Lowe T.M. … Eddy S.R. (Nucleic Acids Res. 1997) 1
  3. The tertiary structure of tRNA and the development of the genetic code. (PMID: 8256282) Hou Y.M. (Trends Biochem. Sci. 1993) 1

Products for TRK-CTT13-1 Gene

Sources for TRK-CTT13-1 Gene

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