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TRIML2 Gene

protein-coding   GIFtS: 45
GCID: GC04M189012

Tripartite Motif Family-Like 2

  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Tripartite Motif Family-Like 21 2     SPRY Domain-Containing Protein 62 3
SPRY Domain Containing 61 2     Probable E3 Ubiquitin-Protein Ligase TRIML22
Tripartite Motif Family-Like Protein 22 3     EC 6.3.2.-3
SPRYD62 3     

External Ids:    HGNC: 263781   Entrez Gene: 2058602   Ensembl: ENSG000001790467   UniProtKB: Q8N7C33   

Export aliases for TRIML2 gene to outside databases

Previous GC identifers: GC04M189250 GC04M184748


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for TRIML2 Gene:
TRIML2 (tripartite motif family-like 2) is a protein-coding gene. Diseases associated with TRIML2 include endotheliitis. GO annotations related to this gene include ligase activity. An important paralog of this gene is RFPL1.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000004.12  NT_016354.20  NC_018915.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the TRIML2 gene promoter:
         Nkx3-1   Nkx3-1 v4   Nkx3-1 v1   Evi-1   PPAR-alpha   Nkx3-1 v2   PPAR-gamma1   Nkx3-1 v3   PPAR-gamma2   Zic3   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTRIML2 promoter sequence
   Search Chromatin IP Primers for TRIML2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TRIML2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q35.2   Ensembl cytogenetic band:  4q35.2   HGNC cytogenetic band: 4q35.2

TRIML2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TRIML2 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M189012:  view genomic region     (about GC identifiers)

Start:
189,012,427 bp from pter      End:
189,030,757 bp from pter
Size:
18,331 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: TRIMM_HUMAN, Q8N7C3 (See protein sequence)
Recommended Name: Probable E3 ubiquitin-protein ligase TRIML2  
Size: 387 amino acids; 43983 Da

Explore the universe of human proteins at neXtProt for TRIML2: NX_Q8N7C3

Explore proteomics data for TRIML2 at MOPED


See TRIML2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_775824.1  
ENSEMBL proteins: 
 ENSP00000422581   ENSP00000317498   ENSP00000421575   ENSP00000426074   ENSP00000441236  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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5 InterPro protein domains:
 IPR006574 PRY
 IPR001870 B30.2/SPRY
 IPR003877 SPRY_rcpt
 IPR003879 Butyrophylin
 IPR008985 ConA-like_lec_gl_sf

Graphical View of Domain Structure for InterPro Entry Q8N7C3

ProtoNet protein and cluster: Q8N7C3

1 Blocks protein domain: IPB003879 Butyrophylin C-terminal DUF signature

UniProtKB/Swiss-Prot: TRIMM_HUMAN, Q8N7C3
Similarity: Contains 1 B30.2/SPRY domain


TRIML2 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Enzyme Number (IUBMB): EC 6.3.2.-1

     Gene Ontology (GO): 3 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding ----
GO:0008270zinc ion binding ----
GO:0016874ligase activity IEA--
     
TRIML2 for ontologies           About GeneDecksing


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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytosol2
nucleus2
endoplasmic reticulum1
mitochondrion1
peroxisome1
plasma membrane1

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005622intracellular ----

TRIML2 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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UniProtKB/Swiss-Prot: TRIMM_HUMAN, Q8N7C3
Pathway: Protein modification; protein ubiquitination

    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TRIML2
Interactions:

    Search GeneGlobe Interaction Network for TRIML2

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

1 Interacting protein for TRIML2 (Q8N7C33 ENSP000003174984) via UniProtKB, MINT, STRING, and/or I2D

InteractantInteraction Details
GeneCardExternal ID(s)
SUMO2P619563, ENSP000004059654I2D: score=1 STRING: ENSP00000405965
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Gene Ontology (GO): 3 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0010033response to organic substance ----
GO:0016567protein ubiquitination IEA--
GO:0032526response to retinoic acid IEA--

TRIML2 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for TRIML2 (TRIMM)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for TRIML2 gene: 
NM_173553.1  

Unigene Cluster for TRIML2:

Tripartite motif family-like 2
Hs.276429  [show with all ESTs]
Unigene Representative Sequence: BC143709
8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000512729(uc003izk.1 uc003izl.2 uc011cle.1) ENST00000326754
ENST00000503475 ENST00000503141(uc003izj.1) ENST00000511771 ENST00000502707
ENST00000394461 ENST00000536972(uc011clf.1)
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Additional mRNA sequence: 

AK098667.1 AK300428.1 AY435043.1 AY435044.1 BC111959.1 BC111961.1 BC143709.1 

1 DOTS entry:

DT.40274006 

9 AceView cDNA sequences:

AY435044 BM423837 AY435043 AK098667 NM_173553 BX390776 AI192180 AA729485 
CD247097 

GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for TRIML2    About this scheme

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7
SP1:                                          
SP2:                                          
SP3:                                -         


ECgene alternative splicing isoforms for TRIML2

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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TRIML2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GTCCTTCTTG
TRIML2 Expression
About this image


TRIML2 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 3) fully expand
 
 Inner Cell Mass (Early Embryonic Tissues)    fully expand to see all 2 entries
         Human embryonic stem cells (family)
 
 Testis (Reproductive System)
         XY Germ Cells Testis Cord
 
 Gonad
         XY Germ Cells Testis Cord
TRIML2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

TRIML2 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.276429
    Custom PCR Arrays for TRIML2
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRIML2

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for TRIML2 gene from Selected species (see all 8)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Triml21 , 5 tripartite motif family-like 21, 5 72.42(n)1
60.27(a)1
  8 (23.89 cM)5
6221171  NM_001160412.11  NP_001153884.11 
 431831225 
lizard
(Anolis carolinensis)
Reptilia --
Uncharacterized protein
31(a)
many ↔ many
2(196162553-196163309)


ENSEMBL Gene Tree for TRIML2 (if available)
TreeFam Gene Tree for TRIML2 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for TRIML2 gene
RFPL12  MEFV2  RFPL4AL12  RFPL32  RFPL4A2  RFPL22  RFPL4B2  
5 SIMAP similar genes for TRIML2 using alignment to 3 protein entries:     TRIMM_HUMAN (see all proteins):
FLJ25801    TRIML1    TRIM11    MEFV    TRIM58

TRIML2 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for TRIML2 (see all 518)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 4 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs106078521,2
C--184754264(+) AAAAA-/AA/AAA
        
GATTT
1 -- int11NA 2
rs572837491,2
C--189011929(+) TGAGCT/CAAGAT 1 -- ds50012Minor allele frequency- C:0.44CSA EA 122
rs76984721,2
C,F,A--189011930(+) GAGCCA/GAGATC 1 -- ds50016Minor allele frequency- G:0.38NA WA CSA EA 248
rs1854235831,2
--189011997(+) AAAAGA/GAAAGA 1 -- ds50010--------
rs1894642591,2
--189012043(+) CTTATC/TCACAT 1 -- ds50010--------
rs1808397171,2
--189012046(+) ATCCAC/TATAAA 1 -- ds50010--------
rs1850458461,2
--189012138(+) GTTCCA/GCATGG 1 -- ds50010--------
rs1884819241,2
--189012245(+) GGACCC/TCAGAC 1 -- ds50010--------
rs1161085911,2
F--189012290(+) CATATG/CCATTT 1 -- ds50011Minor allele frequency- C:0.02WA 118
rs1491711021,2
C--189012435(+) GGAACA/GCTTTT 1 -- ut310--------

HapMap Linkage Disequilibrium report for TRIML2 (189012427 - 189030757 bp)

Structural Variations
     Database of Genomic Variants (DGV) Selected variations for TRIML2 (see all 19):    About this table    
Variant IDTypeSubtypePubMed ID
esv2673712CNV Deletion23128226
nsv880937CNV Loss21882294
dgv332n21CNV Loss19592680
nsv880478CNV Loss21882294
nsv10629CNV Loss18304495
nsv880458CNV Gain21882294
nsv461871CNV Gain19166990
nsv880982CNV Gain21882294
nsv461870CNV Gain19166990
esv2752041CNV Gain17911159

Site Specific Mutation Identification with PCR Assays
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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1 disease for TRIML2:    
About MalaCards
endotheliitis


TRIML2 for disorders           About GeneDecksing


Export disorders for TRIML2 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for TRIML2 gene integrated from 10 sources:
(articles sorted by number of sources associating them with TRIML2)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Direct binding of CoREST1 to SUMO-2/3 contributes to gene-specific repression by the LSD1/CoREST1/HDAC complex. (PubMed id 19394292)1 Ouyang J....Gill G. (Mol. Cell 2009)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 205860 HGNC: 26378 AceView: FLJ25801 Ensembl:ENSG00000179046 euGenes: HUgn205860
ECgene: TRIML2 H-InvDB: TRIML2

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for TRIML2 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for TRIML2 gene:
Search GeneIP for patents involving TRIML2

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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