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Aliases for TRIM73 Gene

Aliases for TRIM73 Gene

  • Tripartite Motif Containing 73 2 3
  • TRIM50B 3 4 6
  • Tripartite Motif-Containing Protein 50B 3 4
  • Tripartite Motif-Containing Protein 73 3
  • Tripartite Motif-Containing 50B 2
  • Tripartite Motif-Containing 73 2

External Ids for TRIM73 Gene

Previous HGNC Symbols for TRIM73 Gene

  • TRIM50B

Previous GeneCards Identifiers for TRIM73 Gene

  • GC07P074862
  • GC07P075024
  • GC07P074357

Summaries for TRIM73 Gene

GeneCards Summary for TRIM73 Gene

TRIM73 (Tripartite Motif Containing 73) is a Protein Coding gene. An important paralog of this gene is TRIM50.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM73 Gene

Genomics for TRIM73 Gene

Regulatory Elements for TRIM73 Gene

Genomic Location for TRIM73 Gene

Start:
75,395,063 bp from pter
End:
75,410,996 bp from pter
Size:
15,934 bases
Orientation:
Plus strand

Genomic View for TRIM73 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRIM73 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIM73 Gene

Proteins for TRIM73 Gene

  • Protein details for TRIM73 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86UV7-TRI73_HUMAN
    Recommended name:
    Tripartite motif-containing protein 73
    Protein Accession:
    Q86UV7
    Secondary Accessions:
    • Q8N0S3

    Protein attributes for TRIM73 Gene

    Size:
    250 amino acids
    Molecular mass:
    28517 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRIM73 Gene

Proteomics data for TRIM73 Gene at MOPED

Post-translational modifications for TRIM73 Gene

No Post-translational modifications

Other Protein References for TRIM73 Gene

No data available for DME Specific Peptides for TRIM73 Gene

Domains for TRIM73 Gene

Gene Families for TRIM73 Gene

HGNC:
  • RNF :RING-type (C3HC4) zinc fingers
  • TRIM :Tripartite motif containing / Tripartite motif containing

Suggested Antigen Peptide Sequences for TRIM73 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86UV7

UniProtKB/Swiss-Prot:

TRI73_HUMAN :
  • Q86UV7
Family:
  • Belongs to the TRIM/RBCC family.
Similarity:
  • Contains 1 B box-type zinc finger.
  • Contains 1 RING-type zinc finger.
genes like me logo Genes that share domains with TRIM73: view

Function for TRIM73 Gene

Gene Ontology (GO) - Molecular Function for TRIM73 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
GO:0008270 zinc ion binding IEA --
GO:0046872 metal ion binding --
genes like me logo Genes that share ontologies with TRIM73: view

Animal Model Products

CRISPR Products

miRNA for TRIM73 Gene

miRTarBase miRNAs that target TRIM73

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for TRIM73 Gene

Localization for TRIM73 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TRIM73 Gene COMPARTMENTS Subcellular localization image for TRIM73 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for TRIM73 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
genes like me logo Genes that share ontologies with TRIM73: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TRIM73 Gene

Pathways for TRIM73 Gene

SuperPathways for TRIM73 Gene

No Data Available

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays
    • Ubiquitin Ligases in human,mouse,rat

Gene Ontology (GO) - Biological Process for TRIM73 Gene

None

No data available for Pathways by source for TRIM73 Gene

Transcripts for TRIM73 Gene

mRNA/cDNA for TRIM73 Gene

(6) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TRIM73 Gene

Tripartite motif containing 73:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TRIM73

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for TRIM73
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM73 Gene

No ASD Table

Relevant External Links for TRIM73 Gene

GeneLoc Exon Structure for
TRIM73
ECgene alternative splicing isoforms for
TRIM73

Expression for TRIM73 Gene

mRNA expression in normal human tissues for TRIM73 Gene

SOURCE GeneReport for Unigene cluster for TRIM73 Gene Hs.632307

genes like me logo Genes that share expressions with TRIM73: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for TRIM73 Gene

Orthologs for TRIM73 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRIM73 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRIM50 36
  • 94 (a)
OneToMany
TRIM73 35
  • 96.53 (n)
  • 93.2 (a)
cow
(Bos Taurus)
Mammalia TRIM50 36
  • 43 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 43 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Trim50 36
  • 41 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 9 (a)
ManyToMany
chicken
(Gallus gallus)
Aves -- 36
  • 26 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 9 (a)
ManyToMany
Species with no ortholog for TRIM73:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRIM73 Gene

ENSEMBL:
Gene Tree for TRIM73 (if available)
TreeFam:
Gene Tree for TRIM73 (if available)

Paralogs for TRIM73 Gene

Selected SIMAP similar genes for TRIM73 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with TRIM73: view

Variants for TRIM73 Gene

Sequence variations from dbSNP and Humsavar for TRIM73 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs236634 -- 75,400,267(+) gaggc(C/T)gaggt intron-variant
rs236638 -- 75,405,361(+) GTCAC(A/G)TCCCT utr-variant-3-prime
rs73702636 -- 75,398,956(+) CCTGC(C/T)GGAGC missense, reference
rs73702637 -- 75,398,957(+) CTGCT(A/G)GAGCT synonymous-codon, reference
rs78562029 -- 75,398,955(+) CTCCA(C/G)CAGGC reference, missense

Structural Variations from Database of Genomic Variants (DGV) for TRIM73 Gene

Variant ID Type Subtype PubMed ID
nsv888381 CNV Gain 21882294
nsv528969 CNV Gain 19592680
dgv2102e1 CNV Complex 17122850
essv14753 CNV CNV 17122850
nsv831035 CNV Loss 17160897

Relevant External Links for TRIM73 Gene

HapMap Linkage Disequilibrium report
TRIM73

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TRIM73 Gene

Disorders for TRIM73 Gene

No disorders were found for TRIM73 Gene.

No data available for UniProtKB/Swiss-Prot for TRIM73 Gene

Publications for TRIM73 Gene

  1. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 4
  2. Williams-Beuren syndrome TRIM50 encodes an E3 ubiquitin ligase. (PMID: 18398435) Micale L. … Reymond A. (Eur. J. Hum. Genet. 2008) 3 4
  3. Quantitative analysis of HSP90-client interactions reveals principles of substrate recognition. (PMID: 22939624) Taipale M. … Lindquist S. (Cell 2012) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for TRIM73 Gene

  • Pathway & Disease-focused RT² Profiler PCR Arrays
    • Ubiquitin Ligases in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate TRIM73
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat
  • Predesigned siRNA for gene silencing in human,mouse,rat for TRIM73
  • Block miRNA regulation of TRIM73 using miScript Target Protectors

Sources for TRIM73 Gene

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