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Aliases for TRIM7 Gene

Aliases for TRIM7 Gene

  • Tripartite Motif Containing 7 2 3 5
  • Glycogenin-Interacting Protein 2 3 4
  • Tripartite Motif Protein TRIM7 2 3
  • RING Finger Protein 90 3 4
  • RNF90 3 4
  • GNIP 3 4
  • Tripartite Motif-Containing Protein 7 3
  • Tripartite Motif-Containing 7 2

External Ids for TRIM7 Gene

Previous GeneCards Identifiers for TRIM7 Gene

  • GC05M180671
  • GC05P181733
  • GC05M180683
  • GC05M180739
  • GC05M180732
  • GC05M180553
  • GC05M180620
  • GC05M175348

Summaries for TRIM7 Gene

Entrez Gene Summary for TRIM7 Gene

  • The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1, a B-box type 2, and a coiled-coil region. The protein localizes to both the nucleus and the cytoplasm, and may represent a participant in the initiation of glycogen synthesis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2013]

GeneCards Summary for TRIM7 Gene

TRIM7 (Tripartite Motif Containing 7) is a Protein Coding gene. An important paralog of this gene is TRIM27.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM7 Gene

Genomics for TRIM7 Gene

Regulatory Elements for TRIM7 Gene

Enhancers for TRIM7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F181182 1.7 FANTOM5 Ensembl ENCODE 27 +21.5 21483 3.6 HDGF ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 CBX5 ZNF143 ZNF263 TRIM7 ENSG00000248514 TRIM41 ENSG00000247049 RACK1 MGAT1 GC05P181179 TRL-AAG2-1
GH05F181202 1.2 ENCODE 29.6 -0.4 -418 5.6 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A ZNF2 YY1 ZNF143 FOS TRIM7 RACK1 ENSG00000233937 TRIM52 ENSG00000248514 ZFP62 CNOT6 SNORD96A TRIM52-AS1 MAPK9
GH05F181187 1.6 FANTOM5 ENCODE 20.2 +15.1 15063 6.5 CREB3L1 MLX FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 SSRP1 GLIS1 ENSG00000248514 TRIM7 ENSG00000233937 ENSG00000248367 SNORD96A RACK1 TRIM52 TRIM52-AS1 TRIM41 ZFP62
GH05F181215 1.4 Ensembl ENCODE 14.3 -12.4 -12442 3.7 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A FEZF1 ZNF2 YY1 ENSG00000233937 TRIM52-AS1 ZFP62 RACK1 SNORD96A TRIM7 TRIM52 ENSG00000248367 CNOT6 TRV-AAC1-4
GH05F181200 0.7 Ensembl 21.5 +5.1 5093 0.4 HDAC1 NRF1 ZIC2 GLIS2 JUND ZFHX2 GLIS1 KLF9 KDM1A NFE2 TRIM7 ENSG00000250900
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRIM7 on UCSC Golden Path with GeneCards custom track

Promoters for TRIM7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001298631 -707 4401 PKNOX1 ARNT ZFP64 ARID4B SIN3A ZNF2 YY1 FOS ZNF263 SP3

Genomic Location for TRIM7 Gene

181,193,924 bp from pter
181,205,293 bp from pter
11,370 bases
Minus strand

Genomic View for TRIM7 Gene

Genes around TRIM7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIM7 Gene

Proteins for TRIM7 Gene

  • Protein details for TRIM7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Tripartite motif-containing protein 7
    Protein Accession:
    Secondary Accessions:
    • A2RUE4
    • D3DWR7
    • Q969F5
    • Q96F67
    • Q96J89
    • Q96J90

    Protein attributes for TRIM7 Gene

    511 amino acids
    Molecular mass:
    56631 Da
    Quaternary structure:
    • Forms homodimers and heterodimers. Interacts with GYG and DES.

    Alternative splice isoforms for TRIM7 Gene


neXtProt entry for TRIM7 Gene

Post-translational modifications for TRIM7 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for TRIM7 Gene

Domains & Families for TRIM7 Gene

Gene Families for TRIM7 Gene

Suggested Antigen Peptide Sequences for TRIM7 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • The B30.2 domain mediates interaction with GYG. The coiled-coil region mediates homodimerization and heterodimerization.
  • Belongs to the TRIM/RBCC family.
  • Contains 1 B box-type zinc finger.
  • The B30.2 domain mediates interaction with GYG. The coiled-coil region mediates homodimerization and heterodimerization.
  • Contains 1 B30.2/SPRY domain.
  • Belongs to the TRIM/RBCC family.
  • Contains 1 B box-type zinc finger.
  • Contains 1 RING-type zinc finger.
genes like me logo Genes that share domains with TRIM7: view

Function for TRIM7 Gene

Gene Ontology (GO) - Molecular Function for TRIM7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0008270 zinc ion binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with TRIM7: view
genes like me logo Genes that share phenotypes with TRIM7: view

Animal Model Products

miRNA for TRIM7 Gene

miRTarBase miRNAs that target TRIM7

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TRIM7 Gene

Localization for TRIM7 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TRIM7 gene
Compartment Confidence
nucleus 5
cytosol 3

Gene Ontology (GO) - Cellular Components for TRIM7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 11331580
GO:0005737 cytoplasm IDA 11331580
genes like me logo Genes that share ontologies with TRIM7: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TRIM7 Gene

Pathways & Interactions for TRIM7 Gene

SuperPathways for TRIM7 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRIM7 Gene


No data available for Pathways by source and SIGNOR curated interactions for TRIM7 Gene

Transcripts for TRIM7 Gene

Unigene Clusters for TRIM7 Gene

Tripartite motif containing 7:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM7 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6 ^ 7
SP1: - - - - -
SP2: - - -
SP3: - -
SP4: - -
SP5: - - -

Relevant External Links for TRIM7 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TRIM7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRIM7 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TRIM7 Gene

This gene is overexpressed in Muscle - Skeletal (x8.8), Brain - Cerebellum (x5.6), Brain - Cerebellar Hemisphere (x4.5), and Skin - Sun Exposed (Lower leg) (x4.0).

Protein differential expression in normal tissues from HIPED for TRIM7 Gene

This gene is overexpressed in Cerebrospinal fluid (68.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TRIM7 Gene

Protein tissue co-expression partners for TRIM7 Gene

NURSA nuclear receptor signaling pathways regulating expression of TRIM7 Gene:


SOURCE GeneReport for Unigene cluster for TRIM7 Gene:


mRNA Expression by UniProt/SwissProt for TRIM7 Gene:

Tissue specificity: Skeletal muscle and placenta, at lower levels in heart, brain and pancreas. Isoform 1 is widely expressed with high level in testis, kidney and heart.
genes like me logo Genes that share expression patterns with TRIM7: view

Primer Products

Orthologs for TRIM7 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRIM7 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia TRIM7 35
  • 99 (a)
(Bos Taurus)
Mammalia TRIM7 34 35
  • 87.88 (n)
(Canis familiaris)
Mammalia TRIM7 34 35
  • 86.85 (n)
(Mus musculus)
Mammalia Trim7 34 16 35
  • 86.58 (n)
(Rattus norvegicus)
Mammalia Trim7 34
  • 83.86 (n)
(Monodelphis domestica)
Mammalia TRIM7 35
  • 77 (a)
(Ornithorhynchus anatinus)
Mammalia TRIM7 35
  • 75 (a)
(Gallus gallus)
Aves TRIM7 34
  • 64.75 (n)
TRIM7.1 35
  • 44 (a)
(Anolis carolinensis)
Reptilia TRIM7 35
  • 50 (a)
Species where no ortholog for TRIM7 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TRIM7 Gene

Gene Tree for TRIM7 (if available)
Gene Tree for TRIM7 (if available)

Paralogs for TRIM7 Gene

(13) SIMAP similar genes for TRIM7 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TRIM7: view

Variants for TRIM7 Gene

Sequence variations from dbSNP and Humsavar for TRIM7 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10036883 -- 181,201,064(+) CCAGG(C/T)TTCTC intron-variant, upstream-variant-2KB
rs10044663 -- 181,202,433(+) ctcga(C/T)ctccc intron-variant, upstream-variant-2KB
rs10054630 -- 181,197,516(+) GGAAC(A/C)GCAGG intron-variant
rs10055221 -- 181,194,636(+) GCCCA(G/T)ACTGT downstream-variant-500B, utr-variant-3-prime
rs10056504 -- 181,198,068(+) TGCTG(A/C)GGTGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRIM7 Gene

Variant ID Type Subtype PubMed ID
dgv10251n54 CNV gain 21841781
dgv5862n100 CNV gain 25217958
nsv830567 CNV loss 17160897
nsv600731 CNV loss 21841781
nsv600730 CNV loss 21841781
nsv517697 CNV loss 19592680
nsv477570 CNV novel sequence insertion 20440878
nsv462591 CNV loss 19166990
nsv428133 CNV gain 18775914
dgv735n27 CNV gain 19166990

Variation tolerance for TRIM7 Gene

Residual Variation Intolerance Score: 61.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.65; 91.39% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TRIM7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TRIM7 Gene

Disorders for TRIM7 Gene

Relevant External Links for TRIM7

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for TRIM7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM7 Gene

Publications for TRIM7 Gene

  1. The tripartite motif family identifies cell compartments. (PMID: 11331580) Reymond A. … Ballabio A. (EMBO J. 2001) 2 3 4 64
  2. Structure-function analysis of GNIP, the glycogenin-interacting protein. (PMID: 14984203) Zhai L. … Roach P.J. (Arch. Biochem. Biophys. 2004) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. GNIP, a novel protein that binds and activates glycogenin, the self- glucosylating initiator of glycogen biosynthesis. (PMID: 11916970) Skurat A.V. … Roach P.J. (J. Biol. Chem. 2002) 3 4 64
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64

Products for TRIM7 Gene

Sources for TRIM7 Gene

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