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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TRIM67 Gene

protein-coding   GIFtS: 42
GCID: GC01P231298

Tripartite Motif Containing 67

(Previous name: tripartite motif-containing 67)
  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Tripartite Motif Containing 671 2
Tripartite Motif-Containing 671 2
TNL2 3
TRIM9-Like Protein TNL2
Tripartite Motif-Containing Protein 672
TRIM9-Like Protein3

External Ids:    HGNC: 318591   Entrez Gene: 4407302   Ensembl: ENSG000001192837   OMIM: 6105845   UniProtKB: Q6ZTA43   

Export aliases for TRIM67 gene to outside databases

Previous GC identifers: GC01P227606 GC01P229365 GC01P201782


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for TRIM67 Gene: 
TRIM67 (tripartite motif containing 67) is a protein-coding gene. Diseases associated with TRIM67 include neuronitis. GO annotations related to this gene include zinc ion binding. An important paralog of this gene is TRIM13.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NT_167186.1  NC_018912.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TRIM67 gene promoter:
         AhR   NF-kappaB2   NRSF form 1   NF-kappaB   NF-kappaB1   NRSF form 2   GATA-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTRIM67 promoter sequence
   Search SABiosciences Chromatin IP Primers for TRIM67

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TRIM67


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q42.2   Ensembl cytogenetic band:  1q42.2   HGNC cytogenetic band: 1q42.2

TRIM67 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TRIM67 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P231298:  view genomic region     (about GC identifiers)

Start:
231,297,858 bp from pter      End:
231,357,314 bp from pter
Size:
59,457 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: TRI67_HUMAN, Q6ZTA4 (See protein sequence)
Recommended Name: Tripartite motif-containing protein 67  
Size: 783 amino acids; 83823 Da
Subcellular location: Cytoplasm (By similarity). Cytoplasm, cytoskeleton (By similarity).
Note=Microtubule-associated (By similarity)
Sequence caution: Sequence=BAC86689.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact;
Secondary accessions: Q5TER7 Q5TER8 Q7Z4K7
Alternative splicing: 2 isoforms:  Q6ZTA4-3   Q6ZTA4-2   (Gene prediction based on EST data)

Explore the universe of human proteins at neXtProt for TRIM67: NX_Q6ZTA4

Explore proteomics data for TRIM67 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q6ZTA4

  • TRIM67 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    TRIM67 Protein Expression
    REFSEQ proteins: NP_001004342.3  
    ENSEMBL proteins: 
     ENSP00000412124   ENSP00000400163   ENSP00000355613   ENSP00000355612  

    Human Recombinant Protein Products for TRIM67: 
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    Cloud-Clone Corp. Proteins for TRIM67 

    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005737cytoplasm IEA--
    GO:0005856cytoskeleton IEA--

    TRIM67 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    FN3: Fibronectin type III domain containing
    TRIM: Tripartite motif containing / Tripartite motif containing

    5/11 InterPro protein domains (see all 11):
     IPR003649 Bbox_C
     IPR017907 Znf_RING_CS
     IPR001841 Znf_RING
     IPR001870 B30.2/SPRY
     IPR017903 COS_domain

    Graphical View of Domain Structure for InterPro Entry Q6ZTA4

    ProtoNet protein and cluster: Q6ZTA4

    2 Blocks protein domains:
    IPB000315 B-box zinc finger signature
    IPB003649 B-box


    UniProtKB/Swiss-Prot: TRI67_HUMAN, Q6ZTA4
    Similarity: Belongs to the TRIM/RBCC family
    Similarity: Contains 2 B box-type zinc fingers
    Similarity: Contains 1 B30.2/SPRY domain
    Similarity: Contains 1 COS domain
    Similarity: Contains 1 fibronectin type-III domain
    Similarity: Contains 1 RING-type zinc finger


    TRIM67 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
    GO:0008270zinc ion binding IEA--
         
    TRIM67 for ontologies           About GeneDecksing


    Animal Models:
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       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for TRIM67 
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    miRNA
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TRIM67

    Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0010976positive regulation of neuron projection development IEA--
    GO:0046580negative regulation of Ras protein signal transduction IEA--
    GO:2000060positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process IEA--

    TRIM67 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for TRIM67 (TRI67)

    Search CenterWatch for drugs/clinical trials and news about TRIM67 / TRI67

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for TRIM67 gene: 
    NM_001004342.3  

    Unigene Cluster for TRIM67:

    Tripartite motif containing 67
    Hs.655089  [show with all ESTs]
    Unigene Representative Sequence: NM_001004342
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000444294(uc009xfn.1) ENST00000449018 ENST00000366653 ENST00000366652

    miRNA
    Products:
         
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat TRIM67
    8/77 QIAGEN miScript miRNA Assays for microRNAs that regulate TRIM67 (see all 77):
    hsa-miR-607 hsa-miR-128 hsa-miR-578 hsa-miR-3653 hsa-miR-1304 hsa-miR-208b hsa-miR-3613-3p hsa-miR-510
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
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    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TRIM67
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    OriGene ORF clones in mouse, rat for TRIM67
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    DNA2.0 Custom Codon Optimized Gene Synthesis Service for TRIM67
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TRIM67
    Sirion Biotech Customized lentivirus for stable overexpression of TRIM67 
                         Customized lentivirus expression plasmids for stable overexpression of TRIM67 
    Primer
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    OriGene qSTAR qPCR primer pairs in human, mouse for TRIM67
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TRIM67
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TRIM67

    Additional mRNA sequence: 

    AK055338.1 AK126782.1 AY253917.1 CR627464.1 

    4 DOTS entries:

    DT.101963015  DT.101958600  DT.70102642  DT.95106964 

    24/29 AceView cDNA sequences (see all 29):

    Z40641 AY253917 AW297595 BM698270 NM_001004342 D56203 BG913053 Z46076 
    BI916399 BI918017 AK055338 AI424633 CR627464 N36794 AA340344 BM667560 
    BG819567 AK126782 F04781 AU252630 Z44872 BG396890 AA084071 AU252494 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TRIM67 expression in normal human tissues (normalized intensities)      TRIM67 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AGAGGTGTTT
    TRIM67 Expression
    About this image


    TRIM67 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/3 selected tissues (see all 3) fully expand
     
     Epiblast (Early Embryonic Tissues)
             Epiblast Stem Cell line 7
     
     Eye (Sensory Organs)
             retinal amacrine cell p0   
     
     Brain (Nervous System)

    See TRIM67 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for TRIM67

    SOURCE GeneReport for Unigene cluster: Hs.655089
        SABiosciences Expression via Pathway-Focused PCR Array including TRIM67: 
              Ubiquitin Ligases in human mouse rat

    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRIM67

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for TRIM67 gene from 6/13 species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Trim671 , 5 tripartite motif-containing 671, 5 86.94(n)1
    93.88(a)1
      8 (72.81 cM)5
    3308631  NM_198632.21  NP_941034.21 
     1247930925 
    chicken
    (Gallus gallus)
    Aves TRIM671 tripartite motif containing 67 80.1(n)
    90.62(a)
      100857188  XM_003640956.1  XP_003641004.1 
    lizard
    (Anolis carolinensis)
    Reptilia TRIM676
    Uncharacterized protein
    81(a)
    1 ↔ 1
    1(223068686-223117933)
    zebrafish
    (Danio rerio)
    Actinopterygii LOC1003321641 e3 ubiquitin-protein ligase TRIM9-like 73.34(n)
    76.73(a)
      100332164  XM_002665649.1  XP_002665695.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Trim96
    Trim9
    41(a)
    1 → many
    2L(10544881-10627374)
    worm
    (Caenorhabditis elegans)
    Secernentea trim-96
    Protein TRIM-9, isoform b
    37(a)
    1 → many
    V(1223897-1235445)


    ENSEMBL Gene Tree for TRIM67 (if available)
    TreeFam Gene Tree for TRIM67 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for TRIM67 gene
    TRIM132  ENSG000002487102  FSD1L2  TRIM462  TRIM632  TRIM592  TRIM92  TRIM362  
    TRIM552  MID12  MID22  TRIM542  FSD12  
    5 SIMAP similar genes for TRIM67 using alignment to 4 protein entries:     TRI67_HUMAN (see all proteins):
    TRIM9    TRIM59    TRIM2    TRIM60    MID1

    TRIM67 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1303 SNPs in TRIM67 are shown (see all 1303)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1842229121,2
    --231296733(+) CTGGGC/GGCAGG 1 -- us2k10--------
    rs752199571,2
    C,F--231296755(+) CCCTGC/GCTGAC 1 -- us2k11Minor allele frequency- G:0.23EA 120
    rs1113820331,2
    C,F--231296975(+) GCTGCG/TCTGCC 1 -- us2k12Minor allele frequency- T:0.05CSA WA 119
    rs731141581,2
    C,F--231297122(+) GGCGTT/CGGAGA 1 -- us2k11Minor allele frequency- C:0.05WA 118
    rs1486559821,2
    C--231297150(+) ATAAA-/AGGAAC 1 -- us2k10--------
    rs1895882781,2
    --231297304(+) ACCGCA/GTGTCC 1 -- us2k10--------
    rs1116741031,2
    C--231297496(+) CCATGT/-TTGCC 1 -- us2k11Minor allele frequency- -:0.50CSA 2
    rs1409451191,2
    C--231297577(+) GGTGT-/GGAACT 1 -- us2k10--------
    rs1926791871,2
    --231297600(+) GGAGAA/CGATGG 1 -- us2k10--------
    rs66595961,2
    C,F--231297752(+) TTCGCT/AGAGCT 1 -- us2k12Minor allele frequency- A:0.19NA EA 240

    HapMap Linkage Disequilibrium report for TRIM67 (231297858 - 231357314 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 10/14 variations for TRIM67 (see all 14):    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2182022CNV Deletion18987734
    esv2724850CNV Deletion23290073
    esv2678520CNV Deletion23128226
    esv1972788CNV Deletion18987734
    esv2494270CNV Deletion19546169
    esv2724839CNV Deletion23290073
    esv2669296CNV Deletion23128226
    esv2555185CNV Insertion19546169
    dgv18n17CNV Loss16327808
    nsv517116CNV Loss19592680

    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing TRIM67
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 610584    OMIM disorders: --

    2 diseases for TRIM67:    About MalaCards
    neuronitis    


    TRIM67 for disorders           About GeneDecksing

    Genetic Association Database (GAD): TRIM67

    Export disorders for TRIM67 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for TRIM67 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with TRIM67)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Subclassification of the RBCC/TRIM superfamily reveals a novel motif necessary for microtubule binding. (PubMed id 16434393)1, 2 Short K.M. and Cox T.C. (2006)
    2. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (2006)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PubMed id 23251661)1 Comuzzie A.G....Butte N.F. (2012)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 440730 HGNC: 31859 AceView: TNL Ensembl:ENSG00000119283 euGenes: HUgn440730
    ECgene: TRIM67 H-InvDB: TRIM67

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for TRIM67 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for TRIM67 gene:
    Search GeneIP for patents involving TRIM67

    GeneCards and IP:
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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