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Aliases for TRIM64B Gene

Aliases for TRIM64B Gene

  • Tripartite Motif Containing 64B 2 3
  • Tripartite Motif-Containing 64B 2

External Ids for TRIM64B Gene

Previous GeneCards Identifiers for TRIM64B Gene

  • GC11M089248
  • GC11M089603

Summaries for TRIM64B Gene

GeneCards Summary for TRIM64B Gene

TRIM64B (Tripartite Motif Containing 64B) is a Protein Coding gene. An important paralog of this gene is TRIM77.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM64B Gene

Genomics for TRIM64B Gene

Genomic Location for TRIM64B Gene

Start:
89,869,282 bp from pter
End:
89,876,017 bp from pter
Size:
6,736 bases
Orientation:
Minus strand

Genomic View for TRIM64B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRIM64B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIM64B Gene

No data available for Regulatory Elements for TRIM64B Gene

Proteins for TRIM64B Gene

  • Protein details for TRIM64B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NI03-TR64B_HUMAN
    Recommended name:
    Putative tripartite motif-containing protein 64B
    Protein Accession:
    A6NI03
    Secondary Accessions:

    Protein attributes for TRIM64B Gene

    Size:
    449 amino acids
    Molecular mass:
    51557 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TRIM64B Gene

Proteomics data for TRIM64B Gene at MOPED

Post-translational modifications for TRIM64B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TRIM64B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TRIM64B Gene

Domains for TRIM64B Gene

Gene Families for TRIM64B Gene

HGNC:
  • RNF :RING-type (C3HC4) zinc fingers
  • TRIM :Tripartite motif containing / Tripartite motif containing

Suggested Antigen Peptide Sequences for TRIM64B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

A6NI03

UniProtKB/Swiss-Prot:

TR64B_HUMAN :
  • A6NI03
Domain:
  • Contains 1 B30.2/SPRY domain.
Family:
  • Belongs to the TRIM/RBCC family.
Similarity:
  • Contains 1 B box-type zinc finger.
  • Contains 1 RING-type zinc finger.
genes like me logo Genes that share domains with TRIM64B: view

Function for TRIM64B Gene

Gene Ontology (GO) - Molecular Function for TRIM64B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
GO:0008270 zinc ion binding IEA --
genes like me logo Genes that share ontologies with TRIM64B: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TRIM64B Gene

Localization for TRIM64B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TRIM64B Gene COMPARTMENTS Subcellular localization image for TRIM64B gene
Compartment Confidence
nucleus 3
cytosol 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for TRIM64B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IEA --
genes like me logo Genes that share ontologies with TRIM64B: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for TRIM64B Gene

Pathways for TRIM64B Gene

SuperPathways for TRIM64B Gene

No Data Available

Gene Ontology (GO) - Biological Process for TRIM64B Gene

None

No data available for Pathways by source for TRIM64B Gene

Transcripts for TRIM64B Gene

mRNA/cDNA for TRIM64B Gene

(3) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TRIM64B

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM64B Gene

No ASD Table

Relevant External Links for TRIM64B Gene

GeneLoc Exon Structure for
TRIM64B
ECgene alternative splicing isoforms for
TRIM64B

Expression for TRIM64B Gene

mRNA expression in normal human tissues for TRIM64B Gene

SOURCE GeneReport for Unigene cluster for TRIM64B Gene Hs.730588

genes like me logo Genes that share expressions with TRIM64B: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for TRIM64B Gene

Orthologs for TRIM64B Gene

This gene was present in the common ancestor of chordates.

Orthologs for TRIM64B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRIM 36
  • 97 (a)
OneToOne
TRIM64B 35
  • 98.36 (n)
  • 96.87 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 60 (a)
ManyToMany
-- 36
  • 51 (a)
ManyToMany
-- 36
  • 58 (a)
ManyToMany
-- 36
  • 57 (a)
ManyToMany
-- 36
  • 57 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 57 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 33 (a)
ManyToMany
-- 36
  • 27 (a)
ManyToMany
-- 36
  • 27 (a)
ManyToMany
-- 36
  • 31 (a)
ManyToMany
-- 36
  • 20 (a)
ManyToMany
-- 36
  • 28 (a)
ManyToMany
-- 36
  • 29 (a)
ManyToMany
-- 36
  • 29 (a)
ManyToMany
-- 36
  • 30 (a)
ManyToMany
-- 36
  • 29 (a)
ManyToMany
-- 36
  • 25 (a)
ManyToMany
-- 36
  • 32 (a)
ManyToMany
-- 36
  • 31 (a)
ManyToMany
-- 36
  • 28 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 18 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 25 (a)
ManyToMany
-- 36
  • 30 (a)
ManyToMany
-- 36
  • 18 (a)
ManyToMany
-- 36
  • 22 (a)
ManyToMany
-- 36
  • 23 (a)
ManyToMany
-- 36
  • 21 (a)
ManyToMany
-- 36
  • 27 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii trim109 36
  • 18 (a)
ManyToMany
Species with no ortholog for TRIM64B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TRIM64B Gene

ENSEMBL:
Gene Tree for TRIM64B (if available)
TreeFam:
Gene Tree for TRIM64B (if available)

Paralogs for TRIM64B Gene

genes like me logo Genes that share paralogs with TRIM64B: view

Variants for TRIM64B Gene

Sequence variations from dbSNP and Humsavar for TRIM64B Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs1473945 -- 89,877,689(+) atctc(A/G)gctta upstream-variant-2KB
rs9667244 -- 89,876,628(+) GAGGC(A/G)GGAGA upstream-variant-2KB
rs11018797 -- 89,876,846(+) AACCG(C/T)GATGC upstream-variant-2KB
rs28441618 -- 89,872,715(+) CTGAG(A/G)CAAAA intron-variant
rs34678191 -- 89,872,942(-) AGGTT(-/A)AAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRIM64B Gene

Variant ID Type Subtype PubMed ID
nsv898094 CNV Gain 21882294
dgv412e1 CNV Complex 17122850
dgv233n67 CNV Gain 20364138
dgv1256n71 CNV Loss 21882294
dgv1257n71 CNV Loss 21882294
nsv832225 CNV Gain 17160897
nsv7222 OTHER Inversion 18451855
nsv469862 CNV Complex 16826518
essv22404 CNV CNV 17122850
nsv8858 CNV Gain+Loss 18304495
dgv1258n71 CNV Loss 21882294
dgv1259n71 CNV Loss 21882294
dgv1260n71 CNV Loss 21882294
nsv508645 CNV Loss 20534489
nsv898111 CNV Loss 21882294
dgv1261n71 CNV Loss 21882294
nsv898118 CNV Gain 21882294

Relevant External Links for TRIM64B Gene

HapMap Linkage Disequilibrium report
TRIM64B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TRIM64B Gene

Disorders for TRIM64B Gene

No disorders were found for TRIM64B Gene.

No data available for UniProtKB/Swiss-Prot for TRIM64B Gene

Publications for TRIM64B Gene

  1. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PMID: 16554811) Taylor T.D. … Sakaki Y. (Nature 2006) 3 4
  2. Identification of a genomic reservoir for new TRIM genes in primate genomes. (PMID: 22144910) Han K. … Sawyer S.L. (PLoS Genet. 2011) 3

Products for TRIM64B Gene

Sources for TRIM64B Gene

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