Aliases for TRIM53AP Gene
Aliases for TRIM53AP Gene
External Ids for TRIM53AP Gene
- HGNC: 19025
- Entrez Gene: 642569
- Ensembl: ENSG00000225581
Previous HGNC Symbols for TRIM53AP Gene
- TRIM53
- TRIM53P
Previous GeneCards Identifiers for TRIM53AP Gene
- GC11M089727
Summaries for TRIM53AP Gene
GeneCards Summary for TRIM53AP Gene
TRIM53AP (Tripartite Motif Containing 53A, Pseudogene) is a Pseudogene.
Additional gene information for TRIM53AP Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM53AP Gene
Genomics for TRIM53AP Gene
Regulatory Element Products
Genomic Locations for TRIM53AP Gene
Genomic Locations for TRIM53AP Gene
- chr11:89,993,536-90,002,508
- (GRCh38/hg38)
- Size:
- 8,973 bases
- Orientation:
- Minus strand
- chr11:89,726,704-89,735,676
- (GRCh37/hg19)
Genomic View for TRIM53AP Gene
Genes around TRIM53AP on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 11q14.3 by Ensembl
- 11q14.3 by Entrez Gene
- 11q14.3 by HGNC
TRIM53AP Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for TRIM53AP Gene
No data available for GeneHancer (GH) Regulatory Elements for TRIM53AP Gene
Proteins for TRIM53AP Gene
Post-translational modifications for TRIM53AP Gene
No Post-translational modifications
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for TRIM53AP
- Origene Custom Protein Services for TRIM53AP
- Search GeneTex for Proteins for TRIM53AP
No data available for DME Specific Peptides for TRIM53AP Gene
Domains & Families for TRIM53AP Gene
Gene Families for TRIM53AP Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRIM53AP Gene
Function for TRIM53AP Gene
Phenotypes for TRIM53AP Gene
- GenomeRNAi human phenotypes for TRIM53AP:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for TRIM53AP
-
- Search ViGene Biosciences for TRIM53AP
CRISPR Products
- Browse CRISPR knockouts for TRIM53AP
- Applied Biological Materials CRISPR for TRIM53AP
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
- Search ViGene Biosciences for TRIM53AP
Inhibitory RNA Products
- Origene RNAi and shrna products in human, mouse, rat for TRIM53AP
- Browse OriGene Inhibitory RNA Products For TRIM53AP
- Search ViGene Biosciences for TRIM53AP
Clone Products
- GenScript: Custom all cDNA clones Services for TRIM53AP
- VectorBuilder custom plasmid, inducible vectors for TRIM53AP
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for TRIM53AP
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for TRIM53AP
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM53AP Gene
Localization for TRIM53AP Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRIM53AP Gene
Transcripts for TRIM53AP Gene
mRNA/cDNA for TRIM53AP Gene
- (1) REFSEQ mRNAs :
- (3) Additional mRNA sequences :
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for TRIM53AP Gene
CRISPR Products
- Browse CRISPR knockouts for TRIM53AP
- Applied Biological Materials CRISPR for TRIM53AP
-
Vectors and viruses for KO, Activation, Repression, and more
miRNA Products
- Search ViGene Biosciences for TRIM53AP
Inhibitory RNA Products
- Origene RNAi and shrna products in human, mouse, rat for TRIM53AP
- Browse OriGene Inhibitory RNA Products For TRIM53AP
- Search ViGene Biosciences for TRIM53AP
Clone Products
- GenScript: Custom all cDNA clones Services for TRIM53AP
- VectorBuilder custom plasmid, inducible vectors for TRIM53AP
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for TRIM53AP
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Applied Biological Materials Clones for TRIM53AP
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for TRIM53AP Gene
NURSA nuclear receptor signaling pathways regulating expression of TRIM53AP Gene:
TRIM53APSOURCE GeneReport for Unigene cluster for TRIM53AP Gene:
Hs.647272Primer Products
-
OriGene qPCR primer pairs for TRIM53AP
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRIM53AP Gene
Orthologs for TRIM53AP Gene
No data available for Orthologs for TRIM53AP Gene
Paralogs for TRIM53AP Gene
No data available for Paralogs for TRIM53AP Gene
Variants for TRIM53AP Gene
| SNP ID | Clin | Chr 11 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000577489 | -- | 90,003,234(-) | T/C | upstream_transcript_variant | |
| rs1001329683 | -- | 89,998,315(-) | T/C | intron_variant | |
| rs1001401868 | -- | 89,997,812(-) | A/G | intron_variant | |
| rs1001512183 | -- | 90,001,169(-) | C/T | intron_variant | |
| rs1004756554 | -- | 90,000,398(-) | A/G | intron_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv233n67 | CNV | gain | 20364138 |
| esv2759849 | CNV | gain+loss | 17122850 |
| esv2762931 | CNV | gain | 21179565 |
| esv33414 | CNV | loss | 17666407 |
| esv3579830 | CNV | loss | 25503493 |
| esv3579831 | CNV | loss | 25503493 |
| esv3579993 | CNV | gain | 25503493 |
| esv3892056 | CNV | gain+loss | 25118596 |
| esv3892060 | CNV | gain | 25118596 |
| nsv1036092 | CNV | loss | 25217958 |
| nsv1043643 | CNV | gain | 25217958 |
| nsv1133000 | OTHER | inversion | 24896259 |
| nsv469862 | CNV | gain | 16826518 |
| nsv508647 | CNV | deletion | 20534489 |
| nsv7222 | OTHER | inversion | 18451855 |
| nsv819015 | CNV | loss | 19587683 |
| nsv826025 | CNV | gain | 20364138 |
| nsv832225 | CNV | gain | 17160897 |
| nsv8858 | CNV | gain+loss | 18304495 |
| nsv972059 | CNV | duplication | 23825009 |
| nsv972060 | CNV | duplication | 23825009 |
Additional Variant Information for TRIM53AP Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- TRIM53AP
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRIM53AP Gene
Disorders for TRIM53AP Gene
Additional Disease Information for TRIM53AP
No disorders were found for TRIM53AP Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM53AP Gene
Publications for TRIM53AP Gene
- Identification of a genomic reservoir for new TRIM genes in primate genomes. (PMID: 22144910) Han K … Sawyer SL (PLoS genetics 2011) 3 58
Products for TRIM53AP Gene
- Browse R&D Systems for Antibodies
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- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
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- Custom Assay Services
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- Origene Custom Protein Services for TRIM53AP
- Origene shrna and RNAi products in human, mouse, rat for TRIM53AP
- Browse OriGene Inhibitory RNA Products For TRIM53AP
- OriGene qPCR primer pairs for TRIM53AP
- Browse CRISPR knockouts for TRIM53AP
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- GenScript: Custom all cDNA clones Services for TRIM53AP
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- Cloud-Clone Corp. disease models service
- Browse cDNA clones at Cloud-Clone Corp.
- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for TRIM53AP
- VectorBuilder custom plasmid, inducible vectors for TRIM53AP
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for TRIM53AP
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for TRIM53AP
- Search GeneTex for Proteins for TRIM53AP
Sources for TRIM53AP Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew