TRIM53AP Gene pseudogene GIFtS : 17 GCID: GC11 M089727
Tripartite Motif Containing 53A, Pseudogene tripartite motif-containing 53, tripartite motif containing... TRIM53, TRIM53P )
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Aliasesfor TRIM53AP gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
10 fRNAdb ,
12 H-InvDB ,
13 NCBI ,
14 NONCODE ,
and/or 15 RNAdb )About This Section GeneCards Plus Aliases Tripartite Motif Containing 53A, Pseudogene 1 2 Tripartite Motif Containing 53, Pseudogene1 TRIM531 2 Tripartite Motif-Containing 531 TRIM53P1 2 TRIM80P2 Tripartite Motif Containing 531
Export aliases for TRIM53AP gene to outside databases
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Summariesfor TRIM53AP gene (According to Entrez Gene ,
GeneCards ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section GeneCards Plus GeneCards Summary for TRIM53AP Gene: TRIM53AP (tripartite motif containing 53A, pseudogene) is a pseudogene.
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Genomic Viewsfor TRIM53AP gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,miRBase ,UCSC (hg19) and
Ensembl (release 75) ,
Regulatory elements and Epigenetics data according to
QIAGEN , and/or
SwitchGear Genomics )About This Section GeneCards Plus RefSeq DNA sequence at NCBI GenBank: NC_000011.9 NC_018922.2 NT_033899.9 Regulatory elements: Search for regulatory transcription factor binding sites for TRIM53AP Other transcription factors Search Chromatin IP Primers for TRIM53AP Epigenetics: DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TRIM53AP
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 11q14.3 Ensembl cytogenetic band: 11q14.3 HGNC cytogenetic band: 11q14.3 TRIM53AP Gene in genomic location: bands according to Ensembl, locations according to
Entrez Gene Ensembl GeneLoc information about chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11M089727: view genomic region
(about GC identifiers )
Start: 89,726,704 bp from pter End:
89,735,676 bp from pter
Size: 8,973 bases Orientation:
minus strand
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Proteinsfor TRIM53AP gene
(According to
1 UniProtKB ,
HORDE ,
2 neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to PhosphoSitePlus ,
Specific Peptides from DME ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec ,
Cloud-Clone Corp. ,
eBioscience , and/or
antibodies-online ,
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences ,
Cloud-Clone Corp. ,
eBioscience , and/or
antibodies-online ,
Antibodies by
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam ,
Cloud-Clone Corp ,
antibodies-online ,
and/or others.)
About This Section GeneCards Plus UniProtKB: --
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Domains /for TRIM53AP gene (According to HGNC , IUPHAR , InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section GeneCards Plus HGNC Gene Families: TRIMP: Triparite motif-containing / Pseudogenes
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Functionfor TRIM53AP gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
genOway ,
QIAGEN
and/or HOMER ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
SwitchGear Genomics ,
Gene Editing from DNA2.0 ,
Clones from OriGene ,
GenScript ,
Sino Biological ,
DNA2.0 ,
Vector BioLabs
and/or Addgene ,
Cell Lines from GenScript ,
ESI BIO ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Flow cytometry from eBioscience ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene .)
About This Section GeneCards Plus
Animal Models: Inhib. RNA TRIM53AP Predesigned siRNA for gene silencing in human mouse rat
Cell Line GenScript Custom overexpressing Cell Line Services for TRIM53AP Browse ESI BIO Cell Lines and PureStem Progenitors for TRIM53AP In Situ AssayAdvanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRIM53AP
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Localizationfor TRIM53AP gene
(According to UniProtKB , COMPARTMENTS Subcellular localization database ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene .)
About This Section GeneCards Plus
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Pathways & Interactionsfor TRIM53AP gene
(SuperPaths according to PathCards ,
Pathways according to
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Sino Biological ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
QIAGEN ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2014 via
Entrez Gene) .
About This Section GeneCards Plus
Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TRIM53AP Interactions: Search GeneGlobe Interaction Network for TRIM53AP
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Drugs & Compoundsfor TRIM53AP gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience ,
ApexBio ,
HMDB ,
BitterDB , and/or
Novoseek ,
Ligands according to IUPHAR ,
and Drugs according to DrugBank ,
Enzo Life Sciences , and/or
PharmGKB )
About This Section GeneCards Plus
Browse compounds at ApexBio Browse Tocris compounds for TRIM53AP
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Transcriptsfor TRIM53AP gene (Secondary structures according to
fRNAdb ,Unigene
(Build 236 Homo sapiens; Apr 25 2013) or GenBank , Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC , GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
SwitchGear Genomics ,
OriGene ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
and/or Addgene ,
Primers from
OriGene , and/or
QIAGEN ,
Flow cytometry from eBioscience
)About This Section GeneCards Plus REFSEQ mRNAs for TRIM53AP gene: NM_001145126.1 Unigene Cluster for TRIM53AP:
Tripartite motif containing 53A, pseudogene Hs.647272 Unigene Representative Sequence: NR_028346 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000532014 (uc010rtz.2 ) Inhib. RNA TRIM53AP Predesigned siRNA for gene silencing in human mouse rat
Additional mRNA sequence: JF968456.1 JF968457.1 NR_028346.1 GeneLoc Exon Structure
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Expression for TRIM53AP gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
Protein expression images according to data from SPIRE 1 MOPED ,
2 PaxDb , and 3 MaxQB ,
plus additional links to
SOURCE , and/or
BioGPS , and/or
UniProtKB ,QIAGEN ,
Primers from
OriGene , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section GeneCards Plus
See probesets specificity/sensitivity at GeneAnnot CGAP TAG: -- TRIM53AP Protein expression data from MOPED1 2 3 : About this image SOURCE GeneReport for Unigene cluster: Hs.647272 Custom PCR Arrays for TRIM53AP Primer human mouse Search Pre-validated RT2 qPCR
Primer Assays in human, mouse, rat TRIM53AP Search QuantiTect SYBR Green Assays in human, mouse, rat TRIM53AP QuantiFast Probe-based Assays in human mouse rat In Situ Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRIM53AP
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Orthologsfor TRIM53AP gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section GeneCards Plus
ENSEMBL Gene Tree for TRIM53AP (if available)TreeFam Gene Tree for TRIM53AP (if available)
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Paralogsfor TRIM53AP gene (Paralogs according to
1 HomoloGene ,2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section GeneCards Plus
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Genomic Variantsfor TRIM53AP gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
4 UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) , the Human Cytochrome P450 Allele
Nomenclature Database , and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN )
About This Section GeneCards Plus Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical Chr 11 pos Sequence # AA Type More # Allele Pop Total More
HapMap Linkage Disequilibrium report for TRIM53AP (89726704 - 89735676 bp)
Structural Variations Database of Genomic Variants (DGV) variations for TRIM53AP: -- Site Specific Mutation Identification with PCR Assays
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Disorders
/ Diseasesfor TRIM53AP gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section GeneCards Plus
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Publicationsfor TRIM53AP gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section GeneCards Plus PubMed article for TRIM53AP gene integrated from 10 sources :(articles sorted by number of sources associating them with TRIM53AP) Utopia : connect your pdf to the dynamic
Identification of a genomic reservoir for new TRIM genes in primate genomes. (PubMed id 22144910) 1 (PLoS Genet. 2011)
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External Searches for TRIM53AP gene (in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section GeneCards Plus
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Genome Databases showing TRIM53AP gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section GeneCards Plus
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Other Databases showing TRIM53AP gene
(According to HUGE )
About This Section GeneCards Plus --
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Specialized Databases showing TRIM53AP gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , UniProtKB/TrEMBL , and/or others, e.g. Wikipedia and GeneReviews , via UniProtKB/Swiss-Prot )About This Section GeneCards Plus
Name Description PharmGKB entry for TRIM53AP Pharmacogenomics, SNPs, Pathways
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About This Section GeneCards Plus Patent Information for TRIM53AP gene: TRIM53AP GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TRIM53AP gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Cloud-Clone Corp. , Thermo Fisher Scientific , eBioscience , antibodies-online , and/or others, Gene Editing from DNA2.0 . Clones from OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Addgene , Cell lines from GenScript , and ESI BIO , Flow cytometery from eBioscience , PCR Arrays from QIAGEN , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , Enzo Life Sciences , and/or
ApexBio , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from genOway )About This Section GeneCards Plus
Block miRNA regulation of human, mouse, rat TRIM53AP using miScript Target Protectors SeqTarget long-range PCR primers for resequencing TRIM53AP DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TRIM53AP Predesigned siRNA for gene silencing in human mouse rat QuantiFast Probe-based Assays in human mouse rat Search QuantiTect SYBR Green Assays in human, mouse, rat TRIM53AP Custom PCR Arrays for TRIM53AP Search Chromatin IP Primers for TRIM53AP Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat TRIM53AP Search GeneGlobe Interaction Network for TRIM53AP Search Regulatory tfbs for TRIM53AP
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRIM53AP
Search ThermoFisher Antibodies for TRIM53AP
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat TRIM53AP
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Databases for TRIM53AP
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Function for TRIM53AP
Genomic Views for TRIM53AP
Intellectual Property for TRIM53AP
Localization for TRIM53AP
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Paralogs for TRIM53AP
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Products for TRIM53AP
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Publications for TRIM53AP
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