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Aliases for TRIM53AP Gene

Aliases for TRIM53AP Gene

  • Tripartite Motif Containing 53A, Pseudogene 2 3 5
  • Tripartite Motif Containing 53, Pseudogene 2 3
  • Tripartite Motif-Containing 53 2 3
  • Tripartite Motif-Containing 49 Pseudogene 3
  • Tripartite Motif Containing 53 2
  • TRIM80P 3
  • TRIM53P 3
  • TRIM53 3

External Ids for TRIM53AP Gene

Previous HGNC Symbols for TRIM53AP Gene

  • TRIM53
  • TRIM53P

Previous GeneCards Identifiers for TRIM53AP Gene

  • GC11M089727

Summaries for TRIM53AP Gene

GeneCards Summary for TRIM53AP Gene

TRIM53AP (Tripartite Motif Containing 53A, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM53AP Gene

Genomics for TRIM53AP Gene

Genomic Location for TRIM53AP Gene

Chromosome:
11
Start:
89,993,536 bp from pter
End:
90,002,508 bp from pter
Size:
8,973 bases
Orientation:
Minus strand

Genomic View for TRIM53AP Gene

Genes around TRIM53AP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM53AP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM53AP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIM53AP Gene

No data available for Regulatory Elements for TRIM53AP Gene

Proteins for TRIM53AP Gene

Post-translational modifications for TRIM53AP Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRIM53AP Gene

Domains & Families for TRIM53AP Gene

Gene Families for TRIM53AP Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRIM53AP: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRIM53AP Gene

Function for TRIM53AP Gene

Phenotypes for TRIM53AP Gene

GenomeRNAi human phenotypes for TRIM53AP:
genes like me logo Genes that share phenotypes with TRIM53AP: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM53AP Gene

Localization for TRIM53AP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRIM53AP Gene

Pathways & Interactions for TRIM53AP Gene

SuperPathways for TRIM53AP Gene

No Data Available

Interacting Proteins for TRIM53AP Gene

Gene Ontology (GO) - Biological Process for TRIM53AP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRIM53AP Gene

Transcripts for TRIM53AP Gene

mRNA/cDNA for TRIM53AP Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TRIM53AP Gene

Tripartite motif containing 53A, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM53AP Gene

No ASD Table

Relevant External Links for TRIM53AP Gene

GeneLoc Exon Structure for
TRIM53AP
ECgene alternative splicing isoforms for
TRIM53AP

Expression for TRIM53AP Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRIM53AP Gene

NURSA nuclear receptor signaling pathways regulating expression of TRIM53AP Gene:

TRIM53AP

SOURCE GeneReport for Unigene cluster for TRIM53AP Gene:

Hs.647272
genes like me logo Genes that share expression patterns with TRIM53AP: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRIM53AP Gene

Orthologs for TRIM53AP Gene

Evolution for TRIM53AP Gene

ENSEMBL:
Gene Tree for TRIM53AP (if available)
TreeFam:
Gene Tree for TRIM53AP (if available)

No data available for Orthologs for TRIM53AP Gene

Paralogs for TRIM53AP Gene

No data available for Paralogs for TRIM53AP Gene

Variants for TRIM53AP Gene

Sequence variations from dbSNP and Humsavar for TRIM53AP Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10830386 -- 90,003,813(+) TATAA(A/T)ATATT upstream-variant-2KB
rs11018808 -- 90,003,984(+) TCTTT(C/T)TGAGG upstream-variant-2KB
rs111157791 -- 90,003,722(+) TATAA(A/T)ATATT upstream-variant-2KB
rs111729232 -- 89,999,684(+) TTCAT(G/T)CAGAT nc-transcript-variant
rs112285507 -- 90,001,248(+) TGAGC(-/CACT)CACTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRIM53AP Gene

Variant ID Type Subtype PubMed ID
dgv233n67 CNV gain 20364138
esv2759849 CNV gain+loss 17122850
esv2762931 CNV gain 21179565
esv33414 CNV loss 17666407
esv3579830 CNV loss 25503493
esv3579831 CNV loss 25503493
esv3579993 CNV gain 25503493
esv3892056 CNV gain+loss 25118596
esv3892060 CNV gain 25118596
nsv1036092 CNV loss 25217958
nsv1043643 CNV gain 25217958
nsv1133000 OTHER inversion 24896259
nsv469862 CNV gain 16826518
nsv508647 CNV deletion 20534489
nsv7222 OTHER inversion 18451855
nsv819015 CNV loss 19587683
nsv826025 CNV gain 20364138
nsv832225 CNV gain 17160897
nsv8858 CNV gain+loss 18304495
nsv972059 CNV duplication 23825009
nsv972060 CNV duplication 23825009

Relevant External Links for TRIM53AP Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRIM53AP

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRIM53AP Gene

Disorders for TRIM53AP Gene

Relevant External Links for TRIM53AP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRIM53AP

No disorders were found for TRIM53AP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM53AP Gene

Publications for TRIM53AP Gene

  1. Identification of a genomic reservoir for new TRIM genes in primate genomes. (PMID: 22144910) Han K. … Sawyer S.L. (PLoS Genet. 2011) 3 64

Products for TRIM53AP Gene

Sources for TRIM53AP Gene

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