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TRIM53AP Gene(Pseudogene)

Tripartite Motif Containing 53A, Pseudogene

GCID:
GC11M089993
GIFtS:
18
Genes Participants
UDN Logo

Aliases for TRIM53AP Gene

Aliases for TRIM53AP Gene

  • Tripartite Motif Containing 53A, Pseudogene 2 3 5
  • Tripartite Motif Containing 53, Pseudogene 2 3
  • Tripartite Motif-Containing 53 2 3
  • Tripartite Motif-Containing 49 Pseudogene 3
  • Tripartite Motif Containing 53 2
  • TRIM80P 3
  • TRIM53P 3
  • TRIM53 3

External Ids for TRIM53AP Gene

Previous HGNC Symbols for TRIM53AP Gene

  • TRIM53
  • TRIM53P

Previous GeneCards Identifiers for TRIM53AP Gene

  • GC11M089727

Summaries for TRIM53AP Gene

GeneCards Summary for TRIM53AP Gene

TRIM53AP (Tripartite Motif Containing 53A, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM53AP Gene

Genomics for TRIM53AP Gene

Products:

  1. Regulatory Element

Regulatory Elements for TRIM53AP Gene

Enhancers for TRIM53AP Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around TRIM53AP on UCSC Golden Path with GeneCards custom track

Genomic Location for TRIM53AP Gene

Chromosome:
11
Start:
89,993,536 bp from pter
End:
90,002,508 bp from pter
Size:
8,973 bases
Orientation:
Minus strand

Genomic View for TRIM53AP Gene

Genes around TRIM53AP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM53AP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM53AP Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRIM53AP Gene

Proteins for TRIM53AP Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRIM53AP Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRIM53AP Gene

Domains & Families for TRIM53AP Gene

Gene Families for TRIM53AP Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRIM53AP: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRIM53AP Gene

Function for TRIM53AP Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for TRIM53AP Gene

GenomeRNAi human phenotypes for TRIM53AP:
genes like me logo Genes that share phenotypes with TRIM53AP: view

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM53AP Gene

Localization for TRIM53AP Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRIM53AP Gene

Pathways & Interactions for TRIM53AP Gene

SuperPathways for TRIM53AP Gene

PathCards logoMore details on SuperPathways for TRIM53AP
No Data Available

Interacting Proteins for TRIM53AP Gene

Gene Ontology (GO) - Biological Process for TRIM53AP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRIM53AP Gene

Drugs & Compounds for TRIM53AP Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRIM53AP Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for TRIM53AP Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TRIM53AP Gene

Tripartite motif containing 53A, pseudogene:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM53AP Gene

No ASD Table

Relevant External Links for TRIM53AP Gene

GeneLoc Exon Structure for
TRIM53AP
ECgene alternative splicing isoforms for
TRIM53AP

Expression for TRIM53AP Gene

Products:

  1. Primer

mRNA expression in normal human tissues for TRIM53AP Gene

mRNA expression in normal human tissues for TRIM53AP Gene
mRNA expression by GTEx for TRIM53AP Gene

SOURCE GeneReport for Unigene cluster for TRIM53AP Gene Hs.647272

genes like me logo Genes that share expression patterns with TRIM53AP: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TRIM53AP Gene

Orthologs for TRIM53AP Gene

Evolution for TRIM53AP Gene

ENSEMBL:
Gene Tree for TRIM53AP (if available)
TreeFam:
Gene Tree for TRIM53AP (if available)

No data available for Orthologs for TRIM53AP Gene

Paralogs for TRIM53AP Gene

No data available for Paralogs for TRIM53AP Gene

Variants for TRIM53AP Gene

Sequence variations from dbSNP and Humsavar for TRIM53AP Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs2175999 -- 89,999,546(-) AACCT(C/G)AAAAC nc-transcript-variant
rs112660818 -- 90,003,381(+) TGGAT(G/T)ATATT upstream-variant-2KB
rs2388341 -- 90,002,601(-) TGCAA(A/G)GGTGT upstream-variant-2KB
rs12421180 -- 90,003,699(+) tatat(A/T)atata upstream-variant-2KB
rs12421181 -- 90,003,708(+) tataa(A/T)atatt upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for TRIM53AP Gene

Disorders for TRIM53AP Gene

Relevant External Links for TRIM53AP

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRIM53AP

No disorders were found for TRIM53AP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM53AP Gene

Publications for TRIM53AP Gene

  1. Identification of a genomic reservoir for new TRIM genes in primate genomes. (PMID: 22144910) Han K. … Sawyer S.L. (PLoS Genet. 2011) 3 67

Products for TRIM53AP Gene

Sources for TRIM53AP Gene

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