Aliases for TRIM52-AS1 Gene
Subcategory (RNA class) for TRIM52-AS1 Gene
non-coding RNA
Quality Score for this RNA gene is
3
External Ids for TRIM52-AS1 Gene
- HGNC: 49006
- Entrez Gene: 100507602
- Ensembl: ENSG00000248275
Previous GeneCards Identifiers for TRIM52-AS1 Gene
- GC05P180693
Summaries for TRIM52-AS1 Gene
GeneCards Summary for TRIM52-AS1 Gene
TRIM52-AS1 (TRIM52 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM52-AS1 Gene
Genomics for TRIM52-AS1 Gene
Regulatory Elements for TRIM52-AS1 Gene
Enhancers for TRIM52-AS1 Gene
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around TRIM52-AS1 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for TRIM52-AS1 Gene
- Chromosome:
- 5
- Start:
- 181,261,212 bp from pter
- End:
- 181,272,307 bp from pter
- Size:
- 11,096 bases
- Orientation:
- Plus strand
Genomic View for TRIM52-AS1 Gene
Genes around TRIM52-AS1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 5q35.3 by Ensembl
- 5q35.3 by Entrez Gene
- 5q35.3 by HGNC
TRIM52-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for TRIM52-AS1 Gene
Proteins for TRIM52-AS1 Gene
Post-translational modifications for TRIM52-AS1 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for TRIM52-AS1
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for TRIM52-AS1
- Origene Custom Protein Services for TRIM52-AS1
- Search GeneTex for Proteins for TRIM52-AS1
No data available for DME Specific Peptides for TRIM52-AS1 Gene
Domains & Families for TRIM52-AS1 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRIM52-AS1 Gene
Function for TRIM52-AS1 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for TRIM52-AS1
-
- Search ViGene Biosciences for TRIM52-AS1
CRISPR Products
- Browse CRISPR knockouts for TRIM52-AS1
miRNA Products
- Search ViGene Biosciences for TRIM52-AS1
Inhibitory RNA Products
- Search ViGene Biosciences for TRIM52-AS1
Clone Products
- GenScript: Custom all cDNA clones Services for TRIM52-AS1
- VectorBuilder custom plasmid, inducible vectors for TRIM52-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for TRIM52-AS1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM52-AS1 Gene
Localization for TRIM52-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRIM52-AS1 Gene
Transcripts for TRIM52-AS1 Gene
mRNA/cDNA for TRIM52-AS1 Gene
- (4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for TRIM52-AS1
miRNA Products
- Search ViGene Biosciences for TRIM52-AS1
Inhibitory RNA Products
- Search ViGene Biosciences for TRIM52-AS1
Clone Products
- GenScript: Custom all cDNA clones Services for TRIM52-AS1
- VectorBuilder custom plasmid, inducible vectors for TRIM52-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for TRIM52-AS1
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Relevant External Links for TRIM52-AS1 Gene
- GeneLoc Exon Structure for
- TRIM52-AS1
- ECgene alternative splicing isoforms for
- TRIM52-AS1
Expression for TRIM52-AS1 Gene
mRNA differential expression in normal tissues according to GTEx for TRIM52-AS1 Gene
This gene is overexpressed in Muscle - Skeletal (x5.2).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRIM52-AS1 Gene
Orthologs for TRIM52-AS1 Gene
Evolution for TRIM52-AS1 Gene
- ENSEMBL:
- Gene Tree for TRIM52-AS1 (if available)
- TreeFam:
- Gene Tree for TRIM52-AS1 (if available)
No data available for Orthologs for TRIM52-AS1 Gene
Paralogs for TRIM52-AS1 Gene
No data available for Paralogs for TRIM52-AS1 Gene
Variants for TRIM52-AS1 Gene
| SNP ID | Clin | Chr 05 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000112663 | -- | 181,261,439(+) | TGGGT(C/T)GGCTG | intron-variant, upstream-variant-2KB | |
| rs1000248541 | -- | 181,268,163(+) | GCTCC(C/T)GCCTG | intron-variant | |
| rs1000306314 | -- | 181,264,050(+) | ATTTC(A/G)GGCCA | intron-variant, nc-transcript-variant, splice-acceptor-variant | |
| rs1000312441 | -- | 181,262,176(+) | CACCT(C/T)TCCTG | intron-variant, upstream-variant-2KB | |
| rs1000670105 | -- | 181,262,625(+) | ACAGA(C/G)GATGG | intron-variant, upstream-variant-2KB |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1155e214 | CNV | gain | 21293372 |
| dgv1156e214 | CNV | loss | 21293372 |
| nsv1019099 | CNV | loss | 25217958 |
| nsv1028730 | CNV | gain | 25217958 |
| nsv428133 | CNV | gain | 18775914 |
| nsv462591 | CNV | loss | 19166990 |
| nsv517697 | CNV | loss | 19592680 |
| nsv600731 | CNV | loss | 21841781 |
Relevant External Links for TRIM52-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- TRIM52-AS1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRIM52-AS1 Gene
Disorders for TRIM52-AS1 Gene
Relevant External Links for TRIM52-AS1
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- TRIM52-AS1
No disorders were found for TRIM52-AS1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM52-AS1 Gene
Publications for TRIM52-AS1 Gene
- Downregulation of long non-coding RNA TRIM52-AS1 functions as a tumor suppressor in renal cell carcinoma. (PMID: 26934858) Liu Z. … Xiu Y.C. (Mol Med Rep 2016) 2 3 64
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
Products for TRIM52-AS1 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for TRIM52-AS1
- Origene Custom Protein Services for TRIM52-AS1
- Browse OriGene Inhibitory RNA Products For TRIM52-AS1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for TRIM52-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For TRIM52-AS1
- GenScript: Custom all cDNA clones Services for TRIM52-AS1
- GenScript Custom Purified and Recombinant Proteins Services for TRIM52-AS1
- GenScript Custom Assay Services for TRIM52-AS1
- GenScript Custom overexpressing Cell Line Services for TRIM52-AS1
- Browse GenScript CRISPR for TRIM52-AS1
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for TRIM52-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Search GeneTex for Antibodies for TRIM52-AS1
- Search GeneTex for Proteins for TRIM52-AS1
- Search ViGene Biosciences for TRIM52-AS1
- Cyagen custom Knockout/knockin (KOKI) mouse models for TRIM52-AS1
- VectorBuilder custom plasmid, inducible vectors for TRIM52-AS1
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for TRIM52-AS1
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for TRIM52-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer