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TRIM52-AS1 Gene(RNA Gene)

TRIM52 Antisense RNA 1 (Head To Head)

GCID:
GC05P181261
GIFtS:
11
Genes Participants
UDN Logo

Aliases for TRIM52-AS1 Gene

Subcategory (RNA class) for TRIM52-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRIM52-AS1 Gene

  • TRIM52 Antisense RNA 1 (Head To Head) 2 3 5
  • CTC-338M12.3 3

External Ids for TRIM52-AS1 Gene

Previous GeneCards Identifiers for TRIM52-AS1 Gene

  • GC05P180693

Summaries for TRIM52-AS1 Gene

GeneCards Summary for TRIM52-AS1 Gene

TRIM52-AS1 (TRIM52 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM52-AS1 Gene

Genomics for TRIM52-AS1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for TRIM52-AS1 Gene

Enhancers for TRIM52-AS1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around TRIM52-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TRIM52-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TRIM52-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TRIM52-AS1 Gene

Chromosome:
5
Start:
181,261,212 bp from pter
End:
181,272,307 bp from pter
Size:
11,096 bases
Orientation:
Plus strand

Genomic View for TRIM52-AS1 Gene

Genes around TRIM52-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM52-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM52-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRIM52-AS1 Gene

Proteins for TRIM52-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRIM52-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRIM52-AS1 Gene

Domains & Families for TRIM52-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRIM52-AS1 Gene

Function for TRIM52-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM52-AS1 Gene

Localization for TRIM52-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRIM52-AS1 Gene

Pathways & Interactions for TRIM52-AS1 Gene

SuperPathways for TRIM52-AS1 Gene

PathCards logoMore details on SuperPathways for TRIM52-AS1
No Data Available

Interacting Proteins for TRIM52-AS1 Gene

Gene Ontology (GO) - Biological Process for TRIM52-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRIM52-AS1 Gene

Drugs & Compounds for TRIM52-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRIM52-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for TRIM52-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM52-AS1 Gene

No ASD Table

Relevant External Links for TRIM52-AS1 Gene

GeneLoc Exon Structure for
TRIM52-AS1
ECgene alternative splicing isoforms for
TRIM52-AS1

Expression for TRIM52-AS1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues for TRIM52-AS1 Gene

mRNA expression in normal human tissues for TRIM52-AS1 Gene
mRNA expression by GTEx for TRIM52-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TRIM52-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x5.2).
genes like me logo Genes that share expression patterns with TRIM52-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TRIM52-AS1 Gene

Orthologs for TRIM52-AS1 Gene

Evolution for TRIM52-AS1 Gene

ENSEMBL:
Gene Tree for TRIM52-AS1 (if available)
TreeFam:
Gene Tree for TRIM52-AS1 (if available)

No data available for Orthologs for TRIM52-AS1 Gene

Paralogs for TRIM52-AS1 Gene

No data available for Paralogs for TRIM52-AS1 Gene

Variants for TRIM52-AS1 Gene

Sequence variations from dbSNP and Humsavar for TRIM52-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs876154 -- 181,266,126(-) TTTTC(A/G)GTATG intron-variant
rs888708 -- 181,265,320(-) CGTTA(A/T)AGACT intron-variant
rs2770979 -- 181,268,432(+) AACAA(A/G)AACAA intron-variant
rs2770980 -- 181,268,595(+) AATCT(A/G)ATCAA intron-variant
rs2770993 -- 181,271,587(+) cagtc(C/G)ccagg nc-transcript-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for TRIM52-AS1 Gene

Disorders for TRIM52-AS1 Gene

Relevant External Links for TRIM52-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRIM52-AS1

No disorders were found for TRIM52-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM52-AS1 Gene

Publications for TRIM52-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 67

Products for TRIM52-AS1 Gene

Sources for TRIM52-AS1 Gene

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