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Aliases for TRIM52-AS1 Gene

Subcategory (RNA class) for TRIM52-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRIM52-AS1 Gene

  • TRIM52 Antisense RNA 1 (Head To Head) 2 3 5
  • CTC-338M12.3 3

External Ids for TRIM52-AS1 Gene

Previous GeneCards Identifiers for TRIM52-AS1 Gene

  • GC05P180693

Summaries for TRIM52-AS1 Gene

GeneCards Summary for TRIM52-AS1 Gene

TRIM52-AS1 (TRIM52 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TRIM52-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM52-AS1 Gene

Genomics for TRIM52-AS1 Gene

GeneHancer (GH) Regulatory Elements for TRIM52-AS1 Gene

Promoters and enhancers for TRIM52-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I181259 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 628.7 0.0 -27 3.6 CLOCK MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 TRIM52-AS1 TRIM52 RACK1 ENSG00000233937 SNORD96A CNOT6
GH05I181240 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 63.5 -16.0 -16013 9 DMAP1 IRF4 YY1 ZNF213 ZNF143 ZNF548 SP3 ZNF610 GLIS1 NBN ENSG00000233937 RACK1 CTC-338M12.4 GC05M181244 GC05M181245 GC05M181246 GC05M181247 SNORD95 TRIM52-AS1 TRIM52
GH05I181280 Enhancer 1.1 Ensembl ENCODE 91.2 +20.2 20186 2.2 HDGF PKNOX1 ATF1 ARNT ARID4B SIN3A POLR2B FOS ATF7 NFYC ENSG00000248103 TRIM52-AS1 RACK1 TRIM52 ENSG00000233937 ENSG00000247049 TRIM41 TRIM7 ENSG00000250900 ENSG00000274525
GH05I181221 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 36.8 -38.0 -37960 4.4 CLOCK ZFP64 YBX1 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 PIR33457 MIR4638 TRIM41 TRK-CTT2-3 PIR62653 TRV-CAC1-5 ENSG00000233937 RACK1 TRIM52 TRIM52-AS1
GH05I181215 Enhancer 1.5 Ensembl ENCODE dbSUPER 30.5 -43.7 -43677 3.3 CLOCK MLX FEZF1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF548 SP3 TRV-AAC1-4 ENSG00000233937 RACK1 TRIM52 TRIM52-AS1 ZFP62 CNOT6 SNORD96A MGAT1 TRIM7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TRIM52-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TRIM52-AS1 Gene

Genomic Locations for TRIM52-AS1 Gene
chr5:181,261,212-181,272,307
(GRCh38/hg38)
Size:
11,096 bases
Orientation:
Plus strand
chr5:180,688,213-180,699,308
(GRCh37/hg19)

Genomic View for TRIM52-AS1 Gene

Genes around TRIM52-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM52-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM52-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIM52-AS1 Gene

Proteins for TRIM52-AS1 Gene

Post-translational modifications for TRIM52-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRIM52-AS1 Gene

Domains & Families for TRIM52-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRIM52-AS1 Gene

Function for TRIM52-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM52-AS1 Gene

Localization for TRIM52-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TRIM52-AS1 Gene

Pathways & Interactions for TRIM52-AS1 Gene

SuperPathways for TRIM52-AS1 Gene

No Data Available

Interacting Proteins for TRIM52-AS1 Gene

Gene Ontology (GO) - Biological Process for TRIM52-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRIM52-AS1 Gene

Drugs & Compounds for TRIM52-AS1 Gene

No Compound Related Data Available

Transcripts for TRIM52-AS1 Gene

mRNA/cDNA for TRIM52-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM52-AS1 Gene

No ASD Table

Relevant External Links for TRIM52-AS1 Gene

GeneLoc Exon Structure for
TRIM52-AS1
ECgene alternative splicing isoforms for
TRIM52-AS1

Expression for TRIM52-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRIM52-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TRIM52-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x5.2).
genes like me logo Genes that share expression patterns with TRIM52-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRIM52-AS1 Gene

Orthologs for TRIM52-AS1 Gene

Evolution for TRIM52-AS1 Gene

ENSEMBL:
Gene Tree for TRIM52-AS1 (if available)
TreeFam:
Gene Tree for TRIM52-AS1 (if available)

No data available for Orthologs for TRIM52-AS1 Gene

Paralogs for TRIM52-AS1 Gene

No data available for Paralogs for TRIM52-AS1 Gene

Variants for TRIM52-AS1 Gene

Sequence variations from dbSNP and Humsavar for TRIM52-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000112663 -- 181,261,439(+) T/C intron_variant
rs1000248541 -- 181,268,163(+) C/T genic_downstream_transcript_variant, intron_variant
rs1000306314 -- 181,264,050(+) A/G intron_variant, non_coding_transcript_variant, splice_acceptor_variant
rs1000312441 -- 181,262,176(+) T/C intron_variant
rs1000670105 -- 181,262,625(+) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for TRIM52-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1155e214 CNV gain 21293372
dgv1156e214 CNV loss 21293372
nsv1019099 CNV loss 25217958
nsv1028730 CNV gain 25217958
nsv428133 CNV gain 18775914
nsv462591 CNV loss 19166990
nsv517697 CNV loss 19592680
nsv600731 CNV loss 21841781

Additional Variant Information for TRIM52-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRIM52-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRIM52-AS1 Gene

Disorders for TRIM52-AS1 Gene

Additional Disease Information for TRIM52-AS1

No disorders were found for TRIM52-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM52-AS1 Gene

Publications for TRIM52-AS1 Gene

  1. Downregulation of long non-coding RNA TRIM52-AS1 functions as a tumor suppressor in renal cell carcinoma. (PMID: 26934858) Liu Z … Xiu YC (Molecular medicine reports 2016) 2 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TRIM52-AS1 Gene

Sources for TRIM52-AS1 Gene

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