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Aliases for TRIM52-AS1 Gene

Subcategory (RNA class) for TRIM52-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRIM52-AS1 Gene

  • TRIM52 Antisense RNA 1 (Head To Head) 2 3 5
  • CTC-338M12.3 3

External Ids for TRIM52-AS1 Gene

Previous GeneCards Identifiers for TRIM52-AS1 Gene

  • GC05P180693

Summaries for TRIM52-AS1 Gene

GeneCards Summary for TRIM52-AS1 Gene

TRIM52-AS1 (TRIM52 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM52-AS1 Gene

Genomics for TRIM52-AS1 Gene

Regulatory Elements for TRIM52-AS1 Gene

Enhancers for TRIM52-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G181280 1.2 Ensembl ENCODE 91.2 +20.2 20187 2.2 HDGF PKNOX1 ATF1 CREB3L1 ARNT ARID4B SIN3A YY1 FOS NFYC TRIM52-AS1 RACK1 TRIM52 ENSG00000233937 ENSG00000247049 TRIM41 TRIM7 ENSG00000250900 ENSG00000248103 ENSG00000274525
GH05G181240 1.4 ENCODE dbSUPER 63.5 -16.0 -16014 9.0 CREB3L1 AGO1 DMAP1 YBX1 YY1 ZNF143 ZNF548 ZNF263 MCM3 SP3 TRIM52-AS1 ENSG00000233937 ZFP62 TRIM52 RACK1 GFPT2 ENSG00000248367 SNORD96A CNOT6 ENSG00000248514
GH05G181259 1.1 ENCODE 78.6 0.0 -1 3.5 PKNOX1 MLX ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B TRIM52-AS1 TRIM52 RACK1 ZFP62 CNOT6
GH05G181221 1.5 ENCODE dbSUPER 36.8 -38.0 -37961 4.4 CREB3L1 ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 ENSG00000233937 TRIM52-AS1 RACK1 ENSG00000248367 TRIM52 SNORD96A GFPT2 TRIM7 MIR4638 PIR62653
GH05G181215 1.7 Ensembl ENCODE dbSUPER 30.5 -43.7 -43678 3.3 MLX CREB3L1 FEZF1 YY1 ZNF143 ZNF548 ZNF263 SP3 TBX21 MEF2D TRIM52-AS1 ENSG00000233937 RACK1 TRIM7 ENSG00000248367 SNORD96A TRV-AAC1-4 PIR62062
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRIM52-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TRIM52-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000319008 -212 3201 PKNOX1 MLX ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B

Genomic Location for TRIM52-AS1 Gene

Chromosome:
5
Start:
181,261,212 bp from pter
End:
181,272,307 bp from pter
Size:
11,096 bases
Orientation:
Plus strand

Genomic View for TRIM52-AS1 Gene

Genes around TRIM52-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM52-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM52-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIM52-AS1 Gene

Proteins for TRIM52-AS1 Gene

Post-translational modifications for TRIM52-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRIM52-AS1 Gene

Domains & Families for TRIM52-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRIM52-AS1 Gene

Function for TRIM52-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM52-AS1 Gene

Localization for TRIM52-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRIM52-AS1 Gene

Pathways & Interactions for TRIM52-AS1 Gene

SuperPathways for TRIM52-AS1 Gene

No Data Available

Interacting Proteins for TRIM52-AS1 Gene

Gene Ontology (GO) - Biological Process for TRIM52-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRIM52-AS1 Gene

Transcripts for TRIM52-AS1 Gene

mRNA/cDNA for TRIM52-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM52-AS1 Gene

No ASD Table

Relevant External Links for TRIM52-AS1 Gene

GeneLoc Exon Structure for
TRIM52-AS1
ECgene alternative splicing isoforms for
TRIM52-AS1

Expression for TRIM52-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TRIM52-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TRIM52-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x5.2).
genes like me logo Genes that share expression patterns with TRIM52-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TRIM52-AS1 Gene

Orthologs for TRIM52-AS1 Gene

Evolution for TRIM52-AS1 Gene

ENSEMBL:
Gene Tree for TRIM52-AS1 (if available)
TreeFam:
Gene Tree for TRIM52-AS1 (if available)

No data available for Orthologs for TRIM52-AS1 Gene

Paralogs for TRIM52-AS1 Gene

No data available for Paralogs for TRIM52-AS1 Gene

Variants for TRIM52-AS1 Gene

Sequence variations from dbSNP and Humsavar for TRIM52-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000112663 -- 181,261,439(+) TGGGT(C/T)GGCTG intron-variant, upstream-variant-2KB
rs1000248541 -- 181,268,163(+) GCTCC(C/T)GCCTG intron-variant
rs1000306314 -- 181,264,050(+) ATTTC(A/G)GGCCA intron-variant, nc-transcript-variant, splice-acceptor-variant
rs1000312441 -- 181,262,176(+) CACCT(C/T)TCCTG intron-variant, upstream-variant-2KB
rs1000670105 -- 181,262,625(+) ACAGA(C/G)GATGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TRIM52-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1155e214 CNV gain 21293372
dgv1156e214 CNV loss 21293372
nsv1019099 CNV loss 25217958
nsv1028730 CNV gain 25217958
nsv428133 CNV gain 18775914
nsv462591 CNV loss 19166990
nsv517697 CNV loss 19592680
nsv600731 CNV loss 21841781

Relevant External Links for TRIM52-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRIM52-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRIM52-AS1 Gene

Disorders for TRIM52-AS1 Gene

Relevant External Links for TRIM52-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRIM52-AS1

No disorders were found for TRIM52-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM52-AS1 Gene

Publications for TRIM52-AS1 Gene

  1. Downregulation of long non-coding RNA TRIM52-AS1 functions as a tumor suppressor in renal cell carcinoma. (PMID: 26934858) Liu Z. … Xiu Y.C. (Mol Med Rep 2016) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TRIM52-AS1 Gene

Sources for TRIM52-AS1 Gene

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