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Aliases for TRIM52-AS1 Gene

Subcategory (RNA class) for TRIM52-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for TRIM52-AS1 Gene

  • TRIM52 Antisense RNA 1 (Head To Head) 2 3
  • CTC-338M12.3 3

External Ids for TRIM52-AS1 Gene

Previous GeneCards Identifiers for TRIM52-AS1 Gene

  • GC05P180693

Summaries for TRIM52-AS1 Gene

GeneCards Summary for TRIM52-AS1 Gene

TRIM52-AS1 (TRIM52 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM52-AS1 Gene

Genomics for TRIM52-AS1 Gene

Genomic Location for TRIM52-AS1 Gene

Start:
181,261,212 bp from pter
End:
181,272,307 bp from pter
Size:
11,096 bases
Orientation:
Plus strand

Genomic View for TRIM52-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRIM52-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRIM52-AS1 Gene

No data available for Regulatory Elements for TRIM52-AS1 Gene

Proteins for TRIM52-AS1 Gene

Post-translational modifications for TRIM52-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRIM52-AS1 Gene

Domains for TRIM52-AS1 Gene

Gene Families for TRIM52-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TRIM52-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRIM52-AS1 Gene

Function for TRIM52-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TRIM52-AS1 Gene

Localization for TRIM52-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRIM52-AS1 Gene

Pathways for TRIM52-AS1 Gene

SuperPathways for TRIM52-AS1 Gene

No Data Available

Interacting Proteins for TRIM52-AS1 Gene

Gene Ontology (GO) - Biological Process for TRIM52-AS1 Gene

None

No data available for Pathways by source for TRIM52-AS1 Gene

Transcripts for TRIM52-AS1 Gene

mRNA/cDNA for TRIM52-AS1 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TRIM52-AS1
    • Block miRNA regulation of TRIM52-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for TRIM52-AS1

    Primer Products

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for TRIM52-AS1 Gene

    No ASD Table

    Relevant External Links for TRIM52-AS1 Gene

    GeneLoc Exon Structure for
    TRIM52-AS1
    ECgene alternative splicing isoforms for
    TRIM52-AS1

    Expression for TRIM52-AS1 Gene

    mRNA expression in normal human tissues for TRIM52-AS1 Gene

    mRNA differential expression in normal tissues according to GTEx for TRIM52-AS1 Gene

    This gene is overexpressed in Muscle - Skeletal (5.2).
    genes like me logo Genes that share expressions with TRIM52-AS1: view

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for TRIM52-AS1 Gene

    Orthologs for TRIM52-AS1 Gene

    Evolution for TRIM52-AS1 Gene

    ENSEMBL:
    Gene Tree for TRIM52-AS1 (if available)
    TreeFam:
    Gene Tree for TRIM52-AS1 (if available)

    No data available for Orthologs for TRIM52-AS1 Gene

    Paralogs for TRIM52-AS1 Gene

    No data available for Paralogs for TRIM52-AS1 Gene

    Variants for TRIM52-AS1 Gene

    Sequence variations from dbSNP and Humsavar for TRIM52-AS1 Gene

    SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
    rs876154 -- 181,266,126(-) TTTTC(A/G)GTATG intron-variant
    rs888708 -- 181,265,320(-) CGTTA(A/T)AGACT intron-variant
    rs1279909 -- 181,264,442(-) gcctc(G/T)caagt nc-transcript-variant, intron-variant
    rs1279910 -- 181,264,409(-) cgcca(C/T)gcctg nc-transcript-variant, intron-variant
    rs1279911 -- 181,264,199(-) aaaca(C/G)ctggc nc-transcript-variant, intron-variant

    Relevant External Links for TRIM52-AS1 Gene

    HapMap Linkage Disequilibrium report
    TRIM52-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TRIM52-AS1 Gene

    Disorders for TRIM52-AS1 Gene

    No disorders were found for TRIM52-AS1 Gene.

    No data available for UniProtKB/Swiss-Prot for TRIM52-AS1 Gene

    Publications for TRIM52-AS1 Gene

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

    Products for TRIM52-AS1 Gene

    Sources for TRIM52-AS1 Gene

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