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TRIM52-AS1 Gene(RNA Gene)

TRIM52 Antisense RNA 1 (Head To Head)

GCID:
GC05P181261
GIFtS:
14
Genes Participants
UDN Logo

Aliases for TRIM52-AS1 Gene

Subcategory (RNA class) for TRIM52-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TRIM52-AS1 Gene

  • TRIM52 Antisense RNA 1 (Head To Head) 2 3 5
  • CTC-338M12.3 3

External Ids for TRIM52-AS1 Gene

Previous GeneCards Identifiers for TRIM52-AS1 Gene

  • GC05P180693

Summaries for TRIM52-AS1 Gene

GeneCards Summary for TRIM52-AS1 Gene

TRIM52-AS1 (TRIM52 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRIM52-AS1 Gene

Genomics for TRIM52-AS1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for TRIM52-AS1 Gene

Enhancers for TRIM52-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F181259 1.1 ENCODE 78.7 0.0 -1 3.5 PKNOX1 CREB3L1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 TRIM52-AS1 ZFP62 TRIM52 RACK1 ENSG00000233937 CNOT6
GH05F181280 0.9 ENCODE 91.2 +20.1 20063 1.9 TBP HDAC1 PKNOX1 CBX3 NFRKB ARID4B SIN3A NFXL1 ZBTB40 YY1 TRIM52-AS1 ZFP62 RACK1 TRIM52 ENSG00000233937 CNOT6 ENSG00000247049 TRIM41 TRIM7 ENSG00000250900
GH05F181240 1.2 ENCODE 63.5 -16.0 -16014 9.0 CREB3L1 DMAP1 YBX1 YY1 ZNF143 ZNF548 ZNF263 MCM3 SP3 ZNF610 ENSG00000233937 ZFP62 TRIM52-AS1 RACK1 TRIM52 SNORD96A CNOT6 GFPT2 GC05M181244 GC05M181247
GH05F181221 1.2 ENCODE 36.8 -38.0 -37961 4.4 CREB3L1 ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 ENSG00000233937 RACK1 TRIM52-AS1 OR2V2 ENSG00000250765 ZFP62 LOC100128762 LOC646227 LOC100419853 LOC100420514
GH05F181215 1.4 Ensembl ENCODE 30.5 -43.5 -43478 3.7 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A FEZF1 ZNF2 YY1 ENSG00000233937 TRIM52-AS1 ZFP62 RACK1 SNORD96A TRIM7 TRIM52 ENSG00000248367 CNOT6 TRV-AAC1-4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TRIM52-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TRIM52-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001298651 -512 4200 PKNOX1 CREB3L1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for TRIM52-AS1 Gene

Chromosome:
5
Start:
181,261,212 bp from pter
End:
181,272,307 bp from pter
Size:
11,096 bases
Orientation:
Plus strand

Genomic View for TRIM52-AS1 Gene

Genes around TRIM52-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TRIM52-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TRIM52-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for TRIM52-AS1 Gene

Proteins for TRIM52-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for TRIM52-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TRIM52-AS1 Gene

Domains & Families for TRIM52-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TRIM52-AS1 Gene

Function for TRIM52-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TRIM52-AS1 Gene

Localization for TRIM52-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TRIM52-AS1 Gene

Pathways & Interactions for TRIM52-AS1 Gene

SuperPathways for TRIM52-AS1 Gene

PathCards logo More details on SuperPathways for TRIM52-AS1
No Data Available

Interacting Proteins for TRIM52-AS1 Gene

Gene Ontology (GO) - Biological Process for TRIM52-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TRIM52-AS1 Gene

Drugs & Compounds for TRIM52-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for TRIM52-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for TRIM52-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRIM52-AS1 Gene

No ASD Table

Relevant External Links for TRIM52-AS1 Gene

GeneLoc Exon Structure for
TRIM52-AS1
ECgene alternative splicing isoforms for
TRIM52-AS1

Expression for TRIM52-AS1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TRIM52-AS1 Gene

mRNA expression in normal human tissues for TRIM52-AS1 Gene
mRNA expression by GTEx for TRIM52-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TRIM52-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x5.2).
genes like me logo Genes that share expression patterns with TRIM52-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TRIM52-AS1 Gene

Orthologs for TRIM52-AS1 Gene

Evolution for TRIM52-AS1 Gene

ENSEMBL:
Gene Tree for TRIM52-AS1 (if available)
TreeFam:
Gene Tree for TRIM52-AS1 (if available)

No data available for Orthologs for TRIM52-AS1 Gene

Paralogs for TRIM52-AS1 Gene

No data available for Paralogs for TRIM52-AS1 Gene

Variants for TRIM52-AS1 Gene

Sequence variations from dbSNP and Humsavar for TRIM52-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10062449 -- 181,266,518(+) AGTAC(A/G)GTGGA intron-variant
rs10068920 -- 181,265,787(+) CCAAA(C/G)GGCTC intron-variant
rs10070541 -- 181,269,613(+) TAGAA(G/T)TCTCC intron-variant
rs10079554 -- 181,271,078(+) TCCAC(A/G)GGCTT intron-variant
rs10479610 -- 181,267,404(+) cagac(C/T)cttta intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRIM52-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1155e214 CNV gain 21293372
dgv1156e214 CNV loss 21293372
nsv1019099 CNV loss 25217958
nsv1028730 CNV gain 25217958
nsv428133 CNV gain 18775914
nsv462591 CNV loss 19166990
nsv517697 CNV loss 19592680
nsv600731 CNV loss 21841781

Relevant External Links for TRIM52-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TRIM52-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TRIM52-AS1 Gene

Disorders for TRIM52-AS1 Gene

Relevant External Links for TRIM52-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TRIM52-AS1

No disorders were found for TRIM52-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TRIM52-AS1 Gene

Publications for TRIM52-AS1 Gene

  1. Downregulation of long non-coding RNA TRIM52-AS1 functions as a tumor suppressor in renal cell carcinoma. (PMID: 26934858) Liu Z. … Xiu Y.C. (Mol Med Rep 2016) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TRIM52-AS1 Gene

Sources for TRIM52-AS1 Gene

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