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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TRIM52 Gene

protein-coding   GIFtS: 42
GCID: GC05M180687

Tripartite Motif Containing 52

(Previous name: tripartite motif-containing 52)
  Search for TRIM52
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Tripartite Motif Containing 521 2
Tripartite Motif-Containing 521 2
RNF1022 3
RING Finger Protein 1022 3
Tripartite Motif-Containing Protein 522

External Ids:    HGNC: 190241   Entrez Gene: 848512   Ensembl: ENSG000001837187   UniProtKB: Q96A613   

Export aliases for TRIM52 gene to outside databases

Previous GC identifers: GC05P181677 GC05M180745 GC05M180793 GC05M180615 GC05M180682 GC05M175410


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for TRIM52 Gene: 
TRIM52 (tripartite motif containing 52) is a protein-coding gene. GO annotations related to this gene include zinc ion binding. An important paralog of this gene is TRIM31.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000005.9  NT_023133.13  NC_018916.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TRIM52 gene promoter:
         Max1   TBP   USF1   Brachyury   XBP-1   USF-1   STAT3   Chx10   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTRIM52 promoter sequence
   Search SABiosciences Chromatin IP Primers for TRIM52

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TRIM52


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q35.3   Ensembl cytogenetic band:  5q35.3   HGNC cytogenetic band: 5q35.3

TRIM52 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TRIM52 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05M180687:  view genomic region     (about GC identifiers)

Start:
180,681,417 bp from pter      End:
180,688,119 bp from pter
Size:
6,703 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: TRI52_HUMAN, Q96A61 (See protein sequence)
Recommended Name: Tripartite motif-containing protein 52  
Size: 297 amino acids; 34653 Da

Explore the universe of human proteins at neXtProt for TRIM52: NX_Q96A61

Explore proteomics data for TRIM52 at MOPED 

TRIM52 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

TRIM52 Protein Expression

REFSEQ proteins: NP_116154.1  
ENSEMBL proteins: 
 ENSP00000332152  

Human Recombinant Protein Products for TRIM52: 
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Cloud-Clone Corp. Proteins for TRIM52 

Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005622intracellular IEA--

TRIM52 for ontologies           About GeneDecksing



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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
HGNC Gene Families: 
TRIM: Tripartite motif containing / Tripartite motif containing
RNF: RING-type (C3HC4) zinc fingers

5 InterPro protein domains:
 IPR017907 Znf_RING_CS
 IPR001841 Znf_RING
 IPR000315 Znf_B-box
 IPR018957 Znf_C3HC4_RING-type
 IPR013083 Znf_RING/FYVE/PHD

Graphical View of Domain Structure for InterPro Entry Q96A61

ProtoNet protein and cluster: Q96A61

2 Blocks protein domains:
IPB000315 B-box zinc finger signature
IPB001841 Zn-finger


UniProtKB/Swiss-Prot: TRI52_HUMAN, Q96A61
Similarity: Belongs to the TRIM/RBCC family
Similarity: Contains 1 B box-type zinc finger
Similarity: Contains 1 RING-type zinc finger


TRIM52 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

     Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding ----
GO:0008270zinc ion binding IEA--
GO:0046872metal ion binding ----
     
TRIM52 for ontologies           About GeneDecksing


Phenotypes:
     3 GenomeRNAi human phenotypes for TRIM52:
 Increased cell death HMECs cel  Increased gamma-H2AX phosphory  Synthetic lethal with Ras 

Animal Models:
   inGenious Targeting Laboratory - Custom generated mouse model solutions for TRIM52 
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miRNA
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8/11 QIAGEN miScript miRNA Assays for microRNAs that regulate TRIM52 (see all 11):
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Inhib. RNA
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Gene Editing
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In Situ Assay
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRIM52


(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TRIM52

STRING Interaction Network Preview (showing 4 interactants - click image to see more details)

4 Interacting proteins for TRIM52 (Q96A613 ENSP000003321524) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
UBCP0CG483, ENSP000003448184I2D: score=1 STRING: ENSP00000344818
RNF114ENSP000002440614STRING: ENSP00000244061
RNF126ENSP000002923634STRING: ENSP00000292363
TRIM41ENSP000003208694STRING: ENSP00000320869
About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for TRIM52 (TRI52)

Search CenterWatch for drugs/clinical trials and news about TRIM52 / TRI52

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for TRIM52 gene: 
NM_032765.2  

Unigene Cluster for TRIM52:

Tripartite motif containing 52
Hs.458412  [show with all ESTs]
Unigene Representative Sequence: AB209243
5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000513146 ENST00000327767(uc003mnp.3) ENST00000510796 ENST00000503005
ENST00000514805
miRNA
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8/11 QIAGEN miScript miRNA Assays for microRNAs that regulate TRIM52 (see all 11):
hsa-miR-647 hsa-miR-3678-3p hsa-miR-579 hsa-miR-136 hsa-miR-513b hsa-miR-145 hsa-miR-1208 hsa-miR-3919
Browse SwitchGear 3'UTR luciferase reporter plasmids
Inhib. RNA
Products:
     
Browse for Gene Knock-down Tools from EMD Millipore
OriGene RNAi products in human, mouse, rat for TRIM52
QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TRIM52
Clone
Products:
     
OriGene clones in human, mouse for TRIM52 (see all 6)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
GenScript: all cDNA clones in your preferred vector: TRIM52 (NM_032765)
DNA2.0 Custom Codon Optimized Gene Synthesis Service for TRIM52
Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TRIM52
Sirion Biotech Customized lentivirus for stable overexpression of TRIM52 
                     Customized lentivirus expression plasmids for stable overexpression of TRIM52 
Primer
Products:
    
OriGene qPCR primer pairs and template standards for TRIM52
OriGene qSTAR qPCR primer pairs in human, mouse for TRIM52
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  QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TRIM52
  QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TRIM52

Additional mRNA sequence: 

AB209243.1 AK026706.1 AK054802.1 BC007372.2 BC034154.1 

9 DOTS entries:

DT.75140804  DT.95263864  DT.97767868  DT.444176  DT.100751012  DT.120826177  DT.100018872  DT.100788354 
DT.95141001 

24/46 AceView cDNA sequences (see all 46):

BQ013973 AL597542 BX508861 AL600062 AK054802 BX484884 AI167267 BM454987 
CR603450 BG055792 CR599460 BQ011911 AA564845 CA436362 AA806088 AI570340 
AA495752 NM_032765 BC007372 AL698854 AW673910 AI926915 AW440430 AA535626 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

TRIM52 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GCTATCACAT
TRIM52 Expression
About this image


See TRIM52 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for TRIM52

SOURCE GeneReport for Unigene cluster: Hs.458412
    SABiosciences Expression via Pathway-Focused PCR Array including TRIM52: 
          Ubiquitin Ligases in human mouse rat

Primer
Products:
OriGene qPCR primer pairs and template standards for TRIM52
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QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TRIM52
QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TRIM52
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TRIM52

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for TRIM52 gene from 3/9 species (see all 9)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves TRIM27.26
E3 ubiquitin-protein ligase TRIM41
20(a)
1 → many
16(144211-162982)
lizard
(Anolis carolinensis)
Reptilia --
Uncharacterized protein
20(a)
1 → many
2(188794430-188807675)
zebrafish
(Danio rerio)
Actinopterygii TRIM416
tripartite motif containing 41
8(a)
1 → many
7(25340848-25348868)
        Species with no ortholog for TRIM52

ENSEMBL Gene Tree for TRIM52 (if available)
TreeFam Gene Tree for TRIM52 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
Paralogs for TRIM52 gene
TRIM312  TRIM502  TRIM732  TRIM612  TRIM352  TRIM692  TRIM742  TRIM622  
TRIM412  TRIM722  
3 SIMAP similar genes for TRIM52 using alignment to 3 protein entries:     TRI52_HUMAN (see all proteins):
DKFZp666N1710    TRIM41    FLJ00123

TRIM52 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/90 SNPs in TRIM52 are shown (see all 90)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 5 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1499907851,2
--180682884(+) GTTGTG/TCTGTC 1 -- int10--------
rs1452333751,2
--180682909(+) AATCCA/GTTTTT 1 -- int10--------
rs1487482971,2
C--180682984(+) AGCAGA/GGCAAA 1 -- int10--------
rs38465381,2
H--180683097(+) GACAGC/TTGCAG 1 -- int15Minor allele frequency- T:0.00MN NS EA 588
rs1824521621,2
--180683213(+) GGTTCA/GTTTGA 1 -- int10--------
rs1425944501,2
--180683264(+) GCTCAC/TGAAAA 1 -- int10--------
rs1862505871,2
--180683303(+) TTCTGA/CATGTA 1 -- int10--------
rs30735451,2
C--180683373(-) aaaaa-/A/AA  
        
NTCGG
2 -- ut310--------
rs27709651,2
C,F--180683683(-) TGAAAG/CCTTAA 1 -- ut31 ese33Minor allele frequency- C:0.09NA WA 122
rs25450921,2
C,H--180683690(-) CAAGCC/TGTGAA 1 -- ut31 ese37Minor allele frequency- T:0.02NS EA NA WA 536

HapMap Linkage Disequilibrium report for TRIM52 (180681417 - 180688119 bp)

Structural Variations
     Database of Genomic Variants (DGV) 5 variations for TRIM52:    About this table     
Variant IDTypeSubtypePubMed ID
nsv462591CNV Loss19166990
nsv517697CNV Loss19592680
dgv6409n71CNV Loss21882294
nsv883305CNV Gain21882294
nsv428133CNV Gain18775914

SABiosciences Cancer Mutation PCR Assays
SeqTarget long-range PCR primers for resequencing TRIM52
DNA2.0 Custom Variant and Variant Library Synthesis for TRIM52

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for TRIM52 gene integrated from 9 sources:
(articles sorted by number of sources associating them with TRIM52)
    Utopia: connect your pdf to the dynamic
world of online information

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
  3. Systematic analysis of dimeric E3-RING interactions re veals increased combinatorial complexity in human ubiquitination networks. (PubMed id 22493164)1 Woodsmith J....Sanderson C.M. (2012)
  4. Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
  5. Development and validation of a method for profiling post-translational modification activities using protein microarrays. (PubMed id 20596523)1 Del RincA^n S.V....Spruck C. (2010)
  6. Comparison of substrate specificity of the ubiquitin ligases Nedd4 and Nedd4-2 using proteome arrays. (PubMed id 19953087)1 Persaud A....Rotin D. (2009)
  7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 84851 HGNC: 19024 AceView: TRIM52 Ensembl:ENSG00000183718 euGenes: HUgn84851
ECgene: TRIM52 H-InvDB: TRIM52

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for TRIM52 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for TRIM52 gene:
Search GeneIP for patents involving TRIM52

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
About This Section

 
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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